vgteam/gssw issues and pull requests

#31 - Switch to 64 bit node IDs

Pull Request - State: closed - Opened by jeizenga about 3 years ago

#31 - Switch to 64 bit node IDs

Pull Request - State: closed - Opened by jeizenga about 3 years ago

#30 - Fix multiple traceback algorithm at note boundaries

Pull Request - State: closed - Opened by jeizenga over 3 years ago

#30 - Fix multiple traceback algorithm at note boundaries

Pull Request - State: closed - Opened by jeizenga over 3 years ago

#29 - Remove files that collide with SSW files

Pull Request - State: open - Opened by adamnovak about 4 years ago

#29 - Remove files that collide with SSW files

Pull Request - State: open - Opened by adamnovak about 4 years ago

#28 - Use a simde that builds on Clang 11

Pull Request - State: closed - Opened by adamnovak over 4 years ago

#28 - Use a simde that builds on Clang 11

Pull Request - State: closed - Opened by adamnovak over 4 years ago

#27 - enable building on non-X86 with SIMDe

Pull Request - State: closed - Opened by mr-c over 4 years ago

#27 - enable building on non-X86 with SIMDe

Pull Request - State: closed - Opened by mr-c over 4 years ago

#26 - Make build system more flexible

Pull Request - State: closed - Opened by mr-c about 5 years ago

#26 - Make build system more flexible

Pull Request - State: closed - Opened by mr-c about 5 years ago

#25 - Update to interface in pinning algorithm

Pull Request - State: closed - Opened by jeizenga almost 6 years ago

#25 - Update to interface in pinning algorithm

Pull Request - State: closed - Opened by jeizenga almost 6 years ago

#24 - Update gssw.c

Pull Request - State: closed - Opened by dillonl over 6 years ago

#24 - Update gssw.c

Pull Request - State: closed - Opened by dillonl over 6 years ago

#23 - Fix bug in alternate traceback algorithm

Pull Request - State: closed - Opened by jeizenga over 7 years ago

#23 - Fix bug in alternate traceback algorithm

Pull Request - State: closed - Opened by jeizenga over 7 years ago

#22 - Just score it

Pull Request - State: closed - Opened by ekg over 7 years ago

#22 - Just score it

Pull Request - State: closed - Opened by ekg over 7 years ago

#21 - Better pinned alignment logic

Pull Request - State: closed - Opened by jeizenga over 7 years ago

#20 - Bug fix for suboptimal alignments

Pull Request - State: closed - Opened by jeizenga over 7 years ago
Labels: in progress

#19 - Add build status to README

Pull Request - State: closed - Opened by adamnovak over 7 years ago

#18 - Add .travis.yml

Pull Request - State: closed - Opened by adamnovak over 7 years ago

#17 - Add Travis

Issue - State: closed - Opened by adamnovak over 7 years ago

#16 - Add tests, software matrix filler, and improved E and F calculation.

Pull Request - State: closed - Opened by adamnovak over 7 years ago

#15 - Move gssw over to vgteam

Issue - State: closed - Opened by adamnovak over 7 years ago

#14 - Fix end bonus edge cases

Pull Request - State: closed - Opened by adamnovak about 8 years ago - 2 comments

#13 - End bonus

Pull Request - State: closed - Opened by adamnovak about 8 years ago

#12 - Small tweak to cigar construction function

Pull Request - State: closed - Opened by jeizenga about 8 years ago - 1 comment

#11 - Bug fix for pinned alignment full length bonus traceback

Pull Request - State: closed - Opened by jeizenga about 8 years ago

#10 - Full length alignment bonus for pinned alignment

Pull Request - State: closed - Opened by jeizenga about 8 years ago

#9 - Pinned alignment and pinned multi-alignment

Pull Request - State: closed - Opened by jeizenga over 8 years ago - 1 comment

#8 - Incorrect values in E matrix

Issue - State: closed - Opened by jeizenga over 8 years ago - 4 comments

#7 - Base quality adjusted alignment

Pull Request - State: closed - Opened by jeizenga over 8 years ago - 2 comments

#6 - Reworked traceback

Pull Request - State: closed - Opened by adamnovak almost 9 years ago - 2 comments

#5 - Mismatch costs above ~128 not handled correctly

Issue - State: open - Opened by adamnovak almost 9 years ago

#4 - moved memory allocations up

Pull Request - State: open - Opened by RaviGaddipati about 9 years ago

#3 - Moving allocations

Issue - State: open - Opened by RaviGaddipati about 9 years ago - 4 comments

#2 - Moved makefile up one directory and refactored make directives to sta…

Pull Request - State: closed - Opened by ekg about 9 years ago

#1 - Corrections

Pull Request - State: closed - Opened by AlexKuhnle over 9 years ago - 5 comments

GitHub / vgteam/gssw issues and pull requests