vgteam/graph-genomics-review issues and pull requests

#100 - typo in formats section

Pull Request - State: closed - Opened by subwaystation almost 5 years ago - 3 comments

#99 - Add author contributions

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#98 - Funding for JDS

Pull Request - State: closed - Opened by josiahseaman about 5 years ago

#97 - Middle initial and funding

Pull Request - State: closed - Opened by jonassibbesen about 5 years ago

#96 - SH Acknowledgements

Pull Request - State: closed - Opened by subwaystation about 5 years ago

#95 - Affiliation and funding for TM

Pull Request - State: closed - Opened by tobiasmarschall about 5 years ago

#94 - Add funding and disclosures

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#93 - correct GFAv1 link

Pull Request - State: closed - Opened by subwaystation about 5 years ago

#92 - Fix a few typos

Pull Request - State: closed - Opened by glennhickey about 5 years ago

#91 - More edits/comments from Jordan

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#90 - \citeauthor refs are broken

Issue - State: closed - Opened by jeizenga about 5 years ago - 1 comment

#89 - Edits to indexing section

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#88 - add orcid ids

Pull Request - State: closed - Opened by subwaystation about 5 years ago

#87 - Improve viz table more

Pull Request - State: closed - Opened by adamnovak about 5 years ago

#86 - Revise viz section and improve author list

Pull Request - State: closed - Opened by adamnovak about 5 years ago - 2 comments

#85 - Cut down the variant calling section

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#84 - Cut mapper refs

Pull Request - State: closed - Opened by jeizenga about 5 years ago - 1 comment

#83 - Edits and comments for models section

Pull Request - State: closed - Opened by jeizenga about 5 years ago - 2 comments

#82 - Chop Chop Viz Section

Pull Request - State: closed - Opened by subwaystation about 5 years ago

#81 - Reduce number of RNA citations

Pull Request - State: closed - Opened by jonassibbesen about 5 years ago

#80 - I pulled SHIMMER Sketch Graphs out

Issue - State: closed - Opened by adamnovak about 5 years ago - 2 comments

#79 - apply bibliography style recommendations

Pull Request - State: closed - Opened by ekg about 5 years ago

#78 - put figures at end

Pull Request - State: closed - Opened by ekg about 5 years ago

#77 - Metagenomics and quasispecies reduction

Pull Request - State: closed - Opened by jonassibbesen about 5 years ago

#76 - Restructuring and reduction of transcriptomics

Pull Request - State: closed - Opened by jonassibbesen about 5 years ago

#75 - Edits to introduction

Pull Request - State: closed - Opened by jeizenga about 5 years ago - 1 comment

#74 - Shrink the viz table to a plausible size

Pull Request - State: closed - Opened by adamnovak about 5 years ago

#73 - Dramatically shrink difficult region section

Pull Request - State: closed - Opened by jeizenga about 5 years ago - 2 comments

#72 - Try to improve and trim the viz section

Pull Request - State: closed - Opened by adamnovak about 5 years ago - 1 comment

#71 - Update figures

Pull Request - State: closed - Opened by cartoonist about 5 years ago - 2 comments

#70 - Comments on relating section.

Pull Request - State: closed - Opened by jonassibbesen about 5 years ago

#69 - added GenGraph to construction section

Pull Request - State: closed - Opened by subwaystation about 5 years ago

#68 - Cleanup towards submission

Pull Request - State: closed - Opened by ekg about 5 years ago - 1 comment

#67 - some comments + citations

Pull Request - State: closed - Opened by subwaystation about 5 years ago

#66 - Keep on cutting

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#65 - Figures

Pull Request - State: closed - Opened by cartoonist about 5 years ago - 2 comments

#64 - WIP: Comments on what could be removed or simplified

Pull Request - State: closed - Opened by jonassibbesen about 5 years ago - 3 comments

#64 - WIP: Comments on what could be removed or simplified

Pull Request - State: closed - Opened by jonassibbesen about 5 years ago - 3 comments

#63 - Finconstruct

Pull Request - State: closed - Opened by ekg about 5 years ago

#62 - Start cutting down material

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#61 - Reorganize transcriptomics section

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#60 - is it De Bruijn or de Bruijn graphs?

Issue - State: closed - Opened by ekg about 5 years ago - 5 comments

#59 - added two more references

Pull Request - State: closed - Opened by eblerjana about 5 years ago - 2 comments

#58 - Some few edits and added references up to Section 1.3

Pull Request - State: closed - Opened by tobiasmarschall about 5 years ago - 1 comment

#57 - Positional systems section

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#56 - updating text of construction section

Pull Request - State: closed - Opened by ekg about 5 years ago - 2 comments

#55 - Continue working on construction section

Pull Request - State: closed - Opened by ekg about 5 years ago

#54 - Figure1

Pull Request - State: closed - Opened by ekg about 5 years ago

#53 - Various things, some on construction

Pull Request - State: closed - Opened by ekg about 5 years ago

#52 - Adding some references

Pull Request - State: closed - Opened by tobiasmarschall about 5 years ago - 1 comment

#51 - Some comments and edits

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#50 - Construction and some other stuff

Pull Request - State: closed - Opened by ekg about 5 years ago

#49 - Josiah: Finalizing Visualization Text

Pull Request - State: closed - Opened by josiahseaman about 5 years ago

#48 - add table of mappers

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#47 - Revisions to variant calling section

Pull Request - State: closed - Opened by jeizenga about 5 years ago

#46 - Construction

Pull Request - State: closed - Opened by ekg about 5 years ago

#45 - Diploid assembly

Pull Request - State: closed - Opened by shilpagarg about 5 years ago - 2 comments

#44 - Viz Section Polishing

Pull Request - State: closed - Opened by subwaystation about 5 years ago

#43 - Read error correction

Pull Request - State: closed - Opened by maickrau about 5 years ago - 1 comment

#42 - Updated intro of visualization section. Fixed typo in affiliation.

Pull Request - State: closed - Opened by subwaystation over 5 years ago - 2 comments

#41 - first minor adjustments of Josiah + Simon

Pull Request - State: closed - Opened by subwaystation over 5 years ago

#40 - Table of Classification of Graph Tools

Issue - State: closed - Opened by subwaystation over 5 years ago - 1 comment

#39 - More Graph Tools

Issue - State: closed - Opened by subwaystation over 5 years ago - 4 comments

#38 - No Section Sharing Pangenome Graphs

Issue - State: closed - Opened by subwaystation over 5 years ago - 3 comments

#37 - Graph Building Tool REVEAL

Issue - State: closed - Opened by subwaystation over 5 years ago - 1 comment

#36 - No Section about Meta Data / Annotation

Issue - State: closed - Opened by subwaystation over 5 years ago - 1 comment

#35 - Section Visualization

Issue - State: closed - Opened by subwaystation over 5 years ago - 5 comments

#34 - Add a citation to the right place

Pull Request - State: closed - Opened by jltsiren over 5 years ago

#33 - shorter and better Transcriptomics section

Pull Request - State: closed - Opened by jonassibbesen over 5 years ago

#32 - added Metagenomics and quasispecies section

Pull Request - State: closed - Opened by jonassibbesen over 5 years ago

#31 - Updates to graph indexing

Pull Request - State: closed - Opened by jltsiren over 5 years ago

#30 - Application section and terminology changes

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#29 - Revise and comment up to 'General graphs'

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#28 - Additional early section edits

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#27 - Edits to variation graph mapper section

Pull Request - State: closed - Opened by jeizenga over 5 years ago - 10 comments

#26 - Add a first pass at writing up dBG mappers

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#25 - Expand dBG mapper notes

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#24 - Add Robin's section on constructing graphs

Pull Request - State: closed - Opened by jeizenga over 5 years ago

#23 - Start work on DBG mapper section (and revise title)

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#22 - Merge some of my edits

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#21 - Variation graph mappers

Pull Request - State: closed - Opened by xchang1 over 5 years ago

#20 - Update to calling and epigenomics sections

Pull Request - State: closed - Opened by glennhickey over 5 years ago

#19 - Set up a title and an author list

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#18 - Added remaining methods to transcriptome section

Pull Request - State: closed - Opened by jonassibbesen over 5 years ago

#17 - Improve figure citation

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#16 - Added transcriptomic references + slightly better text

Pull Request - State: closed - Opened by jonassibbesen over 5 years ago

#15 - started writing the intro, nearing first draft quality

Pull Request - State: closed - Opened by ekg over 5 years ago

#14 - \emph rather than \it

Pull Request - State: closed - Opened by ekg over 5 years ago

#13 - making things compile

Pull Request - State: closed - Opened by ekg over 5 years ago

#12 - Variation graph mappers

Pull Request - State: closed - Opened by xchang1 over 5 years ago

#11 - Epigenomics references

Pull Request - State: closed - Opened by glennhickey over 5 years ago

#10 - Genotyping and Calling

Pull Request - State: closed - Opened by glennhickey over 5 years ago

#9 - Add alignment section

Pull Request - State: closed - Opened by jeizenga over 5 years ago

#8 - add transcriptomic papers to readme

Pull Request - State: closed - Opened by jonassibbesen over 5 years ago

#7 - Transcriptomics section first draft

Pull Request - State: closed - Opened by jonassibbesen over 5 years ago

#6 - Variation graph mappers

Pull Request - State: closed - Opened by xchang1 over 5 years ago

#5 - Graph indexing

Pull Request - State: closed - Opened by jltsiren over 5 years ago

#4 - Say something about tube maps, and start on vg viz

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#3 - Talk about SGTK and AGB

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#2 - Make a start on the visualization section

Pull Request - State: closed - Opened by adamnovak over 5 years ago

GitHub / vgteam/graph-genomics-review issues and pull requests