vgteam/getblunted issues and pull requests

#56 - --input_gfa required

Issue - State: closed - Opened by gorkemsolun 7 months ago - 6 comments

#55 - Parsing error

Issue - State: closed - Opened by tensulin 11 months ago - 2 comments

#55 - Parsing error

Issue - State: closed - Opened by tensulin 11 months ago - 2 comments

#54 - 1 genome long series of overlapping overlaps --> nonsensical translation table.

Issue - State: open - Opened by Sebastien-Raguideau about 1 year ago - 4 comments

#54 - 1 genome long series of overlapping overlaps --> nonsensical translation table.

Issue - State: open - Opened by Sebastien-Raguideau about 1 year ago - 4 comments

#53 - No longer crash on graphs with reversing self edges

Pull Request - State: closed - Opened by jeizenga over 1 year ago

#53 - No longer crash on graphs with reversing self edges

Pull Request - State: closed - Opened by jeizenga over 1 year ago

#52 - Segmentation fault on compacted DBG

Issue - State: open - Opened by zwh82 over 1 year ago - 8 comments

#52 - Segmentation fault on compacted DBG

Issue - State: open - Opened by zwh82 over 1 year ago - 8 comments

#51 - Do MSAs of long sequences with kalign

Pull Request - State: closed - Opened by jeizenga about 2 years ago

#51 - Do MSAs of long sequences with kalign

Pull Request - State: closed - Opened by jeizenga about 2 years ago

#50 - GetBlunted nearly atomizes Lancet GFAs

Issue - State: open - Opened by adamnovak about 2 years ago - 3 comments

#50 - GetBlunted nearly atomizes Lancet GFAs

Issue - State: open - Opened by adamnovak about 2 years ago - 3 comments

#49 - "Aligning overlaps" fails with segmentation fault on Verkko graph

Issue - State: closed - Opened by rebeccaserramari about 2 years ago - 3 comments

#48 - Issues with compiling due to updated abPOA

Issue - State: closed - Opened by hmusta over 2 years ago - 1 comment

#48 - Issues with compiling due to updated abPOA

Issue - State: closed - Opened by hmusta over 2 years ago - 1 comment

#47 - Error blunting GFA

Issue - State: closed - Opened by JoshuaDanielRubin almost 3 years ago - 5 comments

#47 - Error blunting GFA

Issue - State: closed - Opened by JoshuaDanielRubin almost 3 years ago - 5 comments

#46 - Multithread

Pull Request - State: closed - Opened by rlorigro almost 3 years ago

#46 - Multithread

Pull Request - State: closed - Opened by rlorigro almost 3 years ago

#45 - Issue 37++

Pull Request - State: closed - Opened by rlorigro almost 3 years ago

#44 - Peg to the current abPOA commit

Pull Request - State: closed - Opened by jeizenga almost 3 years ago

#43 - Resolve a couple of small bugs in biclique cover algorithm

Pull Request - State: closed - Opened by jeizenga almost 3 years ago

#43 - Resolve a couple of small bugs in biclique cover algorithm

Pull Request - State: closed - Opened by jeizenga almost 3 years ago

#42 - ERROR: edge not found in overlaps

Issue - State: closed - Opened by Sebastien-Raguideau almost 3 years ago - 8 comments

#42 - ERROR: edge not found in overlaps

Issue - State: closed - Opened by Sebastien-Raguideau almost 3 years ago - 8 comments

#41 - Issue37

Pull Request - State: closed - Opened by rlorigro almost 3 years ago

#41 - Issue37

Pull Request - State: closed - Opened by rlorigro almost 3 years ago

#40 - Long overhang in POA causes bad global alignment

Issue - State: open - Opened by rlorigro almost 3 years ago - 4 comments

#39 - Fix overlapping overlaps occuring on one side only

Pull Request - State: closed - Opened by rlorigro almost 3 years ago

#38 - Integrate abPOA to speed up alignment of long overlaps

Pull Request - State: closed - Opened by jeizenga almost 3 years ago

#37 - ERROR: overlap length is > parent node/path length

Issue - State: closed - Opened by Sebastien-Raguideau almost 3 years ago - 15 comments

#37 - ERROR: overlap length is > parent node/path length

Issue - State: closed - Opened by Sebastien-Raguideau almost 3 years ago - 15 comments

#36 - Hifiasm and speed up

Issue - State: closed - Opened by Sebastien-Raguideau almost 3 years ago - 7 comments
Labels: enhancement

#36 - Hifiasm and speed up

Issue - State: closed - Opened by Sebastien-Raguideau almost 3 years ago - 7 comments
Labels: enhancement

#35 - Terminate called when aligning overlaps

Issue - State: closed - Opened by hugocarmaga over 3 years ago - 9 comments

#34 - cmake error?

Issue - State: closed - Opened by zmz1988 over 3 years ago - 9 comments

#33 - cannot build. get spurious error referring to the version of zlib

Issue - State: closed - Opened by dgordon562 over 3 years ago - 27 comments

#32 - Make sure that M operations are real before skipping alignment

Pull Request - State: closed - Opened by rlorigro almost 4 years ago

#31 - Added condition for old CMake verions

Pull Request - State: open - Opened by rlorigro almost 4 years ago

#30 - Add method to skip alignment for exact overlaps

Pull Request - State: closed - Opened by rlorigro almost 4 years ago - 1 comment

#29 - Debug the dual graph reduction algorithm for computing biclique covers

Pull Request - State: closed - Opened by jeizenga about 4 years ago

#28 - Possible bug in biclique cover

Issue - State: closed - Opened by rlorigro about 4 years ago

#27 - Full-node overlap support

Pull Request - State: closed - Opened by rlorigro about 4 years ago

#26 - Fix deleted line

Pull Request - State: closed - Opened by rlorigro about 4 years ago

#25 - Portability improvements/fixes

Pull Request - State: closed - Opened by rlorigro about 4 years ago

#24 - More darkmode compatibility?

Pull Request - State: closed - Opened by rlorigro about 4 years ago

#23 - More README updates

Pull Request - State: closed - Opened by rlorigro about 4 years ago

#22 - CLI and documentation update

Pull Request - State: closed - Opened by jeizenga about 4 years ago

#21 - Update README

Pull Request - State: closed - Opened by rlorigro about 4 years ago

#20 - Get blunted

Pull Request - State: closed - Opened by jeizenga about 4 years ago - 1 comment

#19 - Major refactor and first complete version of Bluntifier

Pull Request - State: closed - Opened by rlorigro about 4 years ago

#18 - Debug validation script

Pull Request - State: closed - Opened by jeizenga about 4 years ago