veupathdb-ontology/veupathdb-ontology issues and pull requests

#558 - Update README.md

Pull Request - State: open - Opened by zhengj2007 10 months ago

#557 - Issue 484: absolute taxonomic abundance analysis

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago

#556 - Release candidate

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago

#555 - New EUPATH species terms moving forward

Issue - State: open - Opened by bobular over 1 year ago - 3 comments
Labels: Team - PopBio

#554 - Revert deprecation of term EUPATH_0000038

Issue - State: open - Opened by zhengj2007 over 1 year ago
Labels: Team - ClinEpi, status - in process

#553 - Update ID_range.md

Pull Request - State: closed - Opened by zhengj2007 over 1 year ago

#552 - NTR: "resistance to itraconazole"

Issue - State: open - Opened by weili-apidb over 1 year ago - 1 comment
Labels: Team - ISA Genomics, NTR, status - ready for pull request

#551 - NTR: MIC

Issue - State: open - Opened by weili-apidb over 1 year ago - 1 comment
Labels: Team - ISA Genomics, NTR, Pending

#550 - New term requests

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago - 3 comments

#549 - NTR: Days in culture

Issue - State: open - Opened by weili-apidb over 1 year ago - 1 comment
Labels: Team - ISA Genomics, NTR, status - in process

#548 - NTRs: maternal and child specimen terms & related terms

Issue - State: open - Opened by johnwjudkins over 1 year ago - 3 comments
Labels: NTR, status - ready for pull request

#547 - Update ID_range.md

Pull Request - State: closed - Opened by zhengj2007 over 1 year ago

#546 - add rdfs:comment values for ENVO imports

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago

#545 - Equivalent axioms for raw data terms

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago - 2 comments

#544 - Updates & adds OBI import terms

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago

#543 - Update ID_range.md

Pull Request - State: closed - Opened by zhengj2007 over 1 year ago

#542 - Release candidate 20230320

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago - 1 comment

#541 - Some IRIs used in clinEpi_eda have not been imported.

Issue - State: open - Opened by johnwjudkins over 1 year ago - 7 comments
Labels: status - in process

#540 - added or imported organism terms needed by popBio

Pull Request - State: closed - Opened by zhengj2007 over 1 year ago

#539 - Update ID_range.md

Pull Request - State: closed - Opened by zhengj2007 over 1 year ago

#538 - endemicity information terms

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago

#537 - endemicity information terms

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago - 1 comment

#536 - added cm/year and kg/year

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago

#535 - NTR: species terms

Issue - State: closed - Opened by zhengj2007 over 1 year ago - 8 comments
Labels: Team - PopBio, NTR, Release, status - ready for pull request

#534 - NTR: Uranotaenia syntheta complex

Issue - State: open - Opened by bobular over 1 year ago - 2 comments
Labels: Team - PopBio, NTR, status - request submitter review

#533 - collection start & end date terms

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago - 4 comments

#532 - add 'caesarean section'

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago

#531 - add DOI term

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago

#530 - import phenothrin

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago

#529 - NTR: Ethnicities for RIMDAMAL

Issue - State: open - Opened by SAK22 over 1 year ago - 12 comments
Labels: Team - ClinEpi, NTR, status - ready for OBO submission

#528 - NTR: Bacillus thuringiensis toxins

Issue - State: open - Opened by bobular over 1 year ago - 11 comments
Labels: Team - PopBio, NTR, status - ready for pull request

#527 - NTR: Anopheles culicifacies species complex

Issue - State: closed - Opened by bobular over 1 year ago - 5 comments
Labels: Team - PopBio, NTR, Release, status - ready for pull request

#526 - Figure out what to do with `Anopheles amhaicus`

Issue - State: closed - Opened by bobular over 1 year ago - 11 comments
Labels: Team - PopBio, NTR, Release, status - ready for pull request

#525 - NTR: phenothrin

Issue - State: closed - Opened by bobular over 1 year ago - 1 comment
Labels: Team - PopBio, NTR, Release, status - ready for pull request

#524 - NTR: DOI - digital object identifier

Issue - State: closed - Opened by bobular over 1 year ago - 1 comment
Labels: Team - PopBio, NTR, Release, status - ready for pull request

#523 - NTR: kg/year

Issue - State: closed - Opened by danicahelb over 1 year ago - 6 comments
Labels: Team - MicrobiomeDB, NTR, status - ready for pull request

#522 - NTR: cm/year

Issue - State: closed - Opened by danicahelb over 1 year ago - 8 comments
Labels: Team - MicrobiomeDB, NTR, status - ready for pull request

#521 - NTR: Nebulizer treatment duration

Issue - State: open - Opened by SheenaTomko over 1 year ago - 5 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#520 - NTR: Maternal enrollment location

Issue - State: open - Opened by SheenaTomko over 1 year ago - 5 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#519 - NTR: Shigella flexneri serotype 6, by TAC result

Issue - State: open - Opened by SheenaTomko over 1 year ago - 5 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#518 - NTR: Gestational diabetes, by maternal report

Issue - State: open - Opened by danicahelb over 1 year ago - 1 comment
Labels: Team - MicrobiomeDB, NTR

#517 - NTR: Cesarean delivery

Issue - State: closed - Opened by danicahelb over 1 year ago - 4 comments
Labels: Team - MicrobiomeDB, NTR, status - request review JJ

#516 - NTR: ClinEpiDB.org study

Issue - State: open - Opened by danicahelb over 1 year ago - 1 comment
Labels: Team - MicrobiomeDB, NTR

#515 - NTR: Sample notes

Issue - State: open - Opened by danicahelb over 1 year ago
Labels: Team - MicrobiomeDB, NTR

#514 - Update ID_range.md

Pull Request - State: closed - Opened by zhengj2007 over 1 year ago

#513 - NTR: Household minimum dietary diversity

Issue - State: open - Opened by SheenaTomko over 1 year ago - 5 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#512 - NTR: Latrine used for storage, observed

Issue - State: open - Opened by SheenaTomko over 1 year ago - 5 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#511 - added NCBITaxon terms for genomics data

Pull Request - State: closed - Opened by zhengj2007 over 1 year ago

#510 - NTR: Food at birth

Issue - State: open - Opened by SheenaTomko over 1 year ago - 5 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#509 - NTR: Breath test date

Issue - State: open - Opened by SheenaTomko over 1 year ago - 2 comments
Labels: Team - ClinEpi, NTR, status - ready for OBO submission

#508 - NTR: Bayley scales assessment age

Issue - State: open - Opened by SheenaTomko over 1 year ago - 3 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#507 - NTR: Maternal stool intestinal inflammation test

Issue - State: open - Opened by SheenaTomko over 1 year ago - 10 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#506 - NTR: Regenerating family member 1 beta

Issue - State: open - Opened by SheenaTomko over 1 year ago - 7 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#505 - NTR: Myeloperoxidase

Issue - State: open - Opened by SheenaTomko over 1 year ago - 4 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#504 - NTR: Raw virus data for nasal wash

Issue - State: open - Opened by SheenaTomko over 1 year ago - 3 comments
Labels: Team - ClinEpi, NTR, status - wait for OBO response

#503 - NTR: Medication, 4

Issue - State: open - Opened by SheenaTomko over 1 year ago - 1 comment
Labels: Team - ClinEpi, NTR, status - in process

#502 - NTR: Medication, 3

Issue - State: open - Opened by SheenaTomko over 1 year ago - 1 comment
Labels: Team - ClinEpi, NTR, status - in process

#501 - NTR: Medication, 2

Issue - State: open - Opened by SheenaTomko over 1 year ago - 3 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#500 - NTR: Ranitidine end date

Issue - State: open - Opened by SheenaTomko over 1 year ago - 4 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#499 - NTR: Salbutamol end date

Issue - State: open - Opened by SheenaTomko over 1 year ago - 1 comment
Labels: Team - ClinEpi, NTR

#498 - NTR: Antibiotic 2 end date

Issue - State: open - Opened by SheenaTomko over 1 year ago - 1 comment
Labels: Team - ClinEpi, NTR

#497 - NTR: Antibiotic end date

Issue - State: open - Opened by SheenaTomko over 1 year ago - 3 comments
Labels: Team - ClinEpi, NTR

#496 - NTR: Antibiotic, 2

Issue - State: open - Opened by SheenaTomko over 1 year ago - 4 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#495 - NTR: Medication from outside source type

Issue - State: open - Opened by SheenaTomko over 1 year ago - 5 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#494 - NTR: Antibiotic

Issue - State: open - Opened by SheenaTomko over 1 year ago
Labels: Team - ClinEpi, NTR

#493 - NTR: Zinc administered, caregiver report

Issue - State: open - Opened by SheenaTomko over 1 year ago - 3 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#492 - NTR: Steroid end date

Issue - State: open - Opened by SheenaTomko over 1 year ago
Labels: Team - ClinEpi, NTR

#491 - NTR: Mother's BMI

Issue - State: open - Opened by SheenaTomko over 1 year ago - 3 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#490 - Add VEuPathDB term template

Pull Request - State: closed - Opened by zhengj2007 over 1 year ago - 9 comments
Labels: status - request review JZ

#489 - NTR: computed/reconciled organism identification datum (and qualifier term)

Issue - State: open - Opened by bobular over 1 year ago - 27 comments
Labels: Team - PopBio, NTR, Pause

#488 - Refactoring code

Issue - State: closed - Opened by zhengj2007 over 1 year ago - 5 comments
Labels: Cleanup, status - ready for pull request

#487 - NTR: Tick species

Issue - State: open - Opened by SAK22 over 1 year ago - 3 comments
Labels: Team - PopBio, NTR, status - request submitter review

#486 - NTRs: defined placeholders

Issue - State: open - Opened by johnwjudkins over 1 year ago
Labels: Team - ClinEpi, NTR, status - request review JZ

#483 - import 'cow-baited arthropod trap'

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago

#482 - breastfeeding terms - issues 451, 452

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago - 1 comment

#481 - NTR: human baited light trap catch

Issue - State: open - Opened by SAK22 over 1 year ago - 4 comments
Labels: Team - PopBio, NTR, status - ready for OBO submission

#480 - organism detection datum hierarchy

Issue - State: open - Opened by zhengj2007 over 1 year ago - 8 comments
Labels: Cleanup

#472 - NTR: New taxon names

Issue - State: closed - Opened by weili-apidb over 1 year ago - 6 comments
Labels: Team - ISA Genomics, NTR, status - ready for pull request

#470 - Requested category terms

Pull Request - State: closed - Opened by johnwjudkins over 1 year ago - 2 comments
Labels: Pause

#467 - NTR: HIV, by PCR (maternal blood microbiology test)

Issue - State: open - Opened by SheenaTomko over 1 year ago - 7 comments
Labels: Team - ClinEpi, NTR, status - request review JJ

#466 - NTR: HIV, by PCR (Blood microbiology test)

Issue - State: open - Opened by SheenaTomko over 1 year ago - 4 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#465 - NTR: start and end date terms for popbio collections

Issue - State: closed - Opened by bobular over 1 year ago - 12 comments
Labels: Team - PopBio, NTR, Release, status - ready for pull request

#451 - NTR: Early breastfeeding initiated

Issue - State: closed - Opened by SheenaTomko almost 2 years ago - 4 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#449 - Schistosoma in maternal urine

Issue - State: open - Opened by SheenaTomko almost 2 years ago - 5 comments
Labels: Team - ClinEpi, NTR, status - in process

#446 - NTR: Time owned personal bednet categorization

Issue - State: open - Opened by SheenaTomko almost 2 years ago - 5 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#445 - Time since last personal bednet treatment categorization

Issue - State: open - Opened by SheenaTomko almost 2 years ago - 13 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#443 - edit textual definitions for organism detection terms

Issue - State: open - Opened by johnwjudkins almost 2 years ago - 4 comments
Labels: Cleanup, status - request review JZ

#441 - NTR: Healthcare activities <1 hour after delivery

Issue - State: open - Opened by SheenaTomko almost 2 years ago - 12 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#437 - NTR: Observed work characteristics

Issue - State: open - Opened by SheenaTomko almost 2 years ago - 5 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#436 - NTR: Birth attendant characteristics

Issue - State: open - Opened by SheenaTomko almost 2 years ago - 2 comments
Labels: Team - ClinEpi, NTR, status - request submitter review

#435 - NTR: Bag and mask resuscitation performed

Issue - State: closed - Opened by SheenaTomko almost 2 years ago - 4 comments
Labels: Team - ClinEpi, NTR, status - ready for pull request

#429 - NTR: status of population endemicity

Issue - State: closed - Opened by SAK22 almost 2 years ago - 7 comments
Labels: Team - PopBio, NTR, Release, status - ready for pull request

#428 - NTR: number of female Anophelese per night

Issue - State: open - Opened by zhengj2007 almost 2 years ago - 2 comments
Labels: NTR, status - ready for pull request

#424 - organism identification datum, presence of organism in specimen and other organism data terms

Issue - State: open - Opened by zhengj2007 almost 2 years ago - 4 comments
Labels: Bug, status - in process, status - wait for OBO response

#423 - data item related to microbiome detection

Issue - State: open - Opened by zhengj2007 almost 2 years ago - 3 comments
Labels: Bug, status - request review JJ

#396 - NTR: cow-baited tent collection

Issue - State: closed - Opened by SAK22 about 2 years ago - 7 comments
Labels: NTR, status - ready for pull request

#341 - NTR: "surveyed species" for surveillance studies

Issue - State: open - Opened by bobular over 2 years ago - 7 comments
Labels: Team - PopBio, NTR, status - request submitter review

#329 - [Draft] NTR: b57 legacy popbio terms

Issue - State: open - Opened by bobular over 2 years ago - 3 comments
Labels: Team - PopBio, NTR, Pause

#105 - NTRs for organism terms in PopBio

Issue - State: closed - Opened by johnwjudkins almost 4 years ago - 12 comments
Labels: Team - PopBio, NTR

#10 - NTR sent to OMRSE: social economics related

Issue - State: open - Opened by zhengj2007 almost 7 years ago - 1 comment
Labels: NTR

GitHub / veupathdb-ontology/veupathdb-ontology issues and pull requests