Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / vertgenlab/gonomics issues and pull requests
#839 - style: refactor and improvements eau
Pull Request -
State: open - Opened by edotau over 1 year ago
- 1 comment
#838 - samAssembler part 8: Summary statistics from base matrices
Pull Request -
State: open - Opened by rimangan over 1 year ago
- 1 comment
#837 - samAssembler Part 7: Haploid Base Calling from Ancient DNA Reads
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#836 - simulateSam: Ancient DNA Damage
Pull Request -
State: open - Opened by rimangan over 1 year ago
- 1 comment
#835 - interval/query.go
Issue -
State: open - Opened by cfauci over 1 year ago
#834 - samAssembler Part 6: Diploid Base Calling from Ancient DNA Reads
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#833 - Geometric Random Variates
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 2 comments
#832 - Craig remove failing test
Pull Request -
State: closed - Opened by craiglowe over 1 year ago
- 1 comment
#831 - test: axt file to sam test
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#830 - simulateSam - Error and Coverage
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 4 comments
#829 - Gonomics CMD Fix
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#828 - Update README.md
Pull Request -
State: closed - Opened by rimangan over 1 year ago
#827 - Update golang 1.20.3 eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
#826 - Update go1.2 eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
#825 - Update go1.2 eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
#824 - Update README.md
Pull Request -
State: closed - Opened by rimangan over 1 year ago
#823 - Add "keepCellsOption" to fastqFilter
Pull Request -
State: closed - Opened by sweavs111 over 1 year ago
- 2 comments
#822 - testing on one cmd
Pull Request -
State: closed - Opened by rimangan over 1 year ago
#821 - Replace rand.Seed
Issue -
State: open - Opened by dasnellings over 1 year ago
#820 - Update Gonomics for Go 1.2
Pull Request -
State: closed - Opened by dasnellings over 1 year ago
- 1 comment
#819 - WIP: gunzip io reader eau
Pull Request -
State: open - Opened by edotau over 1 year ago
- 1 comment
#818 - Upgrade to golang 1.20
Issue -
State: closed - Opened by edotau over 1 year ago
#817 - style: gonomics spring cleanup refactor edition eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#816 - style: gonomics refactor lint fmt eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 2 comments
#815 - ci: test golint workflow
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#814 - ci: golint gitactions ci eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#813 - cicd: automate go lint fmt eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#812 - WIP: golint eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
#811 - cicd: ubuntu-latest, macos-latest, windows-latest eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#810 - Vcf filter clustered variants
Pull Request -
State: closed - Opened by dasnellings over 1 year ago
- 1 comment
#809 - WIP: sam assembler part 4 fork from riley eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#808 - wip: cicd coverage eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#807 - Update to fmt workflow to fmt packages inside of packages
Pull Request -
State: closed - Opened by dasnellings over 1 year ago
- 3 comments
#806 - fix: go docs + fmt eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#805 - Explicitly zero out any unused fields in bam
Pull Request -
State: closed - Opened by dasnellings over 1 year ago
- 1 comment
#804 - samAssembler Part 5: Scoring output alignments
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 2 comments
#803 - Update scCount.go Usage
Pull Request -
State: closed - Opened by RavenYL over 1 year ago
- 1 comment
#802 - simulateEvol qName Option
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#801 - samAssembler Part 4: The Complete Program
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 4 comments
#800 - feat: auto generate pr template eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 5 comments
#799 - samAssembler Part 3: Haploid Call From Pileup
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 3 comments
#798 - WIP: gonomic cmd embed fork eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#797 - build: Dockerfile container size optimization eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#796 - build: Dockerfile container optimize eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
#795 - Sam assembly part1
Pull Request -
State: closed - Opened by rimangan over 1 year ago
#794 - fix: change bedpeOverlap name eau
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#793 - test: compare gene and other struct tests
Pull Request -
State: closed - Opened by edotau over 1 year ago
- 1 comment
#792 - changed comment line
Pull Request -
State: closed - Opened by sweavs111 over 1 year ago
- 3 comments
#791 - First version of geneIdToName
Pull Request -
State: closed - Opened by sweavs111 over 1 year ago
- 4 comments
#790 - dna: faster BasesToString
Pull Request -
State: closed - Opened by dolmen over 1 year ago
- 7 comments
#789 - /!\ Fix incorrect counting of 'n' in dna.Count, dna.CountMask
Pull Request -
State: closed - Opened by dolmen over 1 year ago
#788 - dna: simplify Dist implementation
Pull Request -
State: closed - Opened by dolmen over 1 year ago
- 1 comment
#787 - dna: simplify IsLower, DefineBase
Pull Request -
State: closed - Opened by dolmen over 1 year ago
- 1 comment
#786 - dna: safer Extract
Pull Request -
State: closed - Opened by dolmen over 1 year ago
- 1 comment
#785 - geneIdToName
Pull Request -
State: closed - Opened by sweavs111 over 1 year ago
- 1 comment
#784 - Bedpe overlap
Pull Request -
State: closed - Opened by sweavs111 over 1 year ago
- 5 comments
#783 - Run gonomics cmd without source code
Pull Request -
State: closed - Opened by dasnellings over 1 year ago
- 3 comments
#782 - Add .bam functionality to samToWig
Pull Request -
State: closed - Opened by sweavs111 over 1 year ago
- 2 comments
#781 - fixing gonomics cmd
Pull Request -
State: closed - Opened by dasnellings over 1 year ago
- 1 comment
#778 - samAssembler Part 2: Diploid INDEL calling from Pileup
Pull Request -
State: closed - Opened by rimangan over 1 year ago
#777 - SamAssembler Part 1: Diploid Variant Calling from Pileup
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#776 - Vcf context
Pull Request -
State: closed - Opened by dasnellings over 1 year ago
- 3 comments
#775 - mergeMultiFa
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#770 - simulateEvol with transition bias
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#765 - Modernize simulateSam
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#764 - multiFaToVcf double counting bug
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#763 - simulateEvol BranchLength with Indels
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#760 - samConsensus Indel support
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 2 comments
#758 - quickOrthologs
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#757 - updates to liftCoordinates
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#756 - bedToWig useRange
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#753 - dnaTwoBit Rearrangement
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#752 - BedFormat Asymmetric Padding
Pull Request -
State: closed - Opened by rimangan over 1 year ago
#751 - tfMatchComp
Pull Request -
State: closed - Opened by rimangan over 1 year ago
- 1 comment
#750 - Motif Package
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 1 comment
#749 - jaspar pfm parser
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 1 comment
#747 - small changes to lastZWriter
Pull Request -
State: closed - Opened by cfauci almost 2 years ago
- 3 comments
#745 - wigPeaks Minima
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 1 comment
#744 - wigFilter
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
#743 - Update README.md
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
#742 - multiFaToChain
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 1 comment
#741 - multiFaToAxt
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 3 comments
#740 - FaPredictSet - lots of new tools
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 1 comment
#738 - 3dGREAT Part 2: Filling the space
Pull Request -
State: open - Opened by rimangan almost 2 years ago
- 1 comment
#737 - wigMath
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 1 comment
#735 - Raven alignAnchor gorgor5
Pull Request -
State: closed - Opened by RavenYL almost 2 years ago
- 1 comment
#734 - bedGraphToWig and wigToTrainingSet
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 1 comment
#733 - bedGraph Package
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 1 comment
#732 - idea for realign in Dunn
Pull Request -
State: closed - Opened by craiglowe almost 2 years ago
- 1 comment
#731 - 3dGREAT Part 1: Laying the foundation
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 1 comment
#729 - bedPeOverlap bedSelect
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 2 comments
#728 - catMultiFa Ignore Names
Pull Request -
State: closed - Opened by rimangan almost 2 years ago
- 1 comment
#721 - first draft of hiCarOverlap. Which sorts hiCarContact data based on a…
Pull Request -
State: closed - Opened by sweavs111 about 2 years ago
- 1 comment
Labels: do not merge
#715 - Create bins
Pull Request -
State: closed - Opened by cfauci about 2 years ago
- 2 comments
Labels: do not merge
#713 - faUniq
Pull Request -
State: closed - Opened by shaesimpson about 2 years ago
#704 - faFormat Rev
Pull Request -
State: closed - Opened by rimangan about 2 years ago
- 1 comment
#686 - value of sam cigar for unmapped read
Issue -
State: open - Opened by craiglowe over 2 years ago
- 1 comment
#673 - intervalOverlap does not work with bam files
Issue -
State: closed - Opened by dasnellings over 2 years ago
#409 - benchmark gtf EffectPrediction vs gene EffectPrediction
Issue -
State: closed - Opened by dasnellings over 3 years ago
#406 - testing coverage for interval/interval.go
Issue -
State: closed - Opened by dasnellings over 3 years ago