vcflib/bio-vcf issues and pull requests

#53 - No output for Statistics

Issue - State: open - Opened by wolfevolution 6 days ago

#52 - Genotype assignment after splitting multiallelic variant sites into biallelic sites

Issue - State: open - Opened by HaesuKo 12 months ago

#51 - Added vcffile.rb to general requires

Pull Request - State: open - Opened by seoanezonjic over 2 years ago - 1 comment

#50 - how to convert vcf to tab-sep file?

Issue - State: closed - Opened by xiucz over 3 years ago - 2 comments

#49 - Debian package for bio-vcf

Issue - State: closed - Opened by pjotrp almost 4 years ago - 2 comments
Labels: build

#48 - Version 0.9.3 missing BioVcf::VCFfile

Issue - State: open - Opened by delongGao almost 5 years ago - 3 comments
Labels: build

#47 - Vcffile

Pull Request - State: closed - Opened by homonecloco almost 6 years ago

#46 - Adding mongo version specific commands

Pull Request - State: closed - Opened by jdeligt over 7 years ago

#45 - Fixing template

Pull Request - State: closed - Opened by jdeligt over 7 years ago

#44 - Possible fix of the issue 33 (Final JSON record has extraneous comma)

Pull Request - State: closed - Opened by uazadi over 7 years ago - 2 comments

#43 - Typo correction

Pull Request - State: closed - Opened by prasunanand over 8 years ago

#42 - Fix handling of VCF file with no records (only header)

Pull Request - State: closed - Opened by gusevfe over 8 years ago

#41 - Nil error can show missing value

Issue - State: open - Opened by pjotrp over 8 years ago
Labels: enhancement

#40 - Treat "./." genotype as valid

Issue - State: open - Opened by pjotrp over 8 years ago - 1 comment
Labels: bug

#39 - Update vcfsample.rb

Pull Request - State: closed - Opened by homonecloco over 8 years ago

#38 - Validate empty samples when it is a single dot

Pull Request - State: closed - Opened by homonecloco over 8 years ago - 1 comment

#37 - Small value for thread-lines may reorder output

Issue - State: open - Opened by pjotrp over 8 years ago
Labels: bug

#36 - Crashes in cleanup_tmpdir near the end of a run

Issue - State: closed - Opened by brettcs over 8 years ago - 2 comments
Labels: bug, Testing

#35 - Improve nil handling of values

Issue - State: open - Opened by pjotrp almost 9 years ago
Labels: enhancement

#34 - INFO rewrite requires an entry in the header

Issue - State: open - Opened by gusevfe almost 9 years ago
Labels: bug

#33 - Final JSON record has extraneous comma

Issue - State: closed - Opened by pjotrp almost 9 years ago - 2 comments
Labels: bug

#32 - Soft filter: over-write filter if previously PASS

Pull Request - State: closed - Opened by chapmanb almost 9 years ago - 2 comments

#31 - Change delimiter for lists

Issue - State: open - Opened by mjafin about 9 years ago - 14 comments
Labels: enhancement, question, Testing

#30 - VCF soft filters

Issue - State: closed - Opened by chapmanb about 9 years ago - 5 comments
Labels: enhancement, Testing

#29 - Fix extracting INFO fields when one is suffix of another

Pull Request - State: closed - Opened by gusevfe over 9 years ago - 1 comment

#28 - Remove the date from the command line flags from the header

Issue - State: closed - Opened by pjotrp over 9 years ago - 2 comments
Labels: enhancement

#27 - v0.8 series slower than v0.7 series

Issue - State: closed - Opened by pjotrp over 9 years ago - 2 comments
Labels: bug, Testing

#26 - Multi-core and zcat

Issue - State: closed - Opened by pjotrp over 9 years ago - 2 comments
Labels: enhancement

#25 - RDF output gets garbled on fast machines

Issue - State: closed - Opened by pjotrp over 9 years ago - 2 comments
Labels: bug, Testing

#24 - Make vcf2json examples output valid json

Pull Request - State: closed - Opened by rernst almost 10 years ago

#23 - Fix issues with phased genotypes

Pull Request - State: closed - Opened by gusevfe about 10 years ago - 1 comment