Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / varfish-org/hgvs-rs issues and pull requests

#221 - chore(deps): bump Swatinem/rust-cache from 2.7.3 to 2.7.7

Pull Request - State: closed - Opened by dependabot[bot] 24 days ago - 1 comment
Labels: dependencies, github_actions

#220 - chore(main): release 0.17.5

Pull Request - State: closed - Opened by varfish-bot about 1 month ago - 3 comments
Labels: autorelease: tagged

#219 - chore: Replace lazy static

Pull Request - State: closed - Opened by tedil about 1 month ago - 2 comments

#218 - fix: Produce Ident protein edits

Pull Request - State: closed - Opened by tedil about 1 month ago - 4 comments

#217 - chore(deps): update rstest requirement from 0.23 to 0.24

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago - 1 comment
Labels: dependencies, rust

#216 - chore(main): release 0.17.4

Pull Request - State: closed - Opened by varfish-bot 2 months ago - 3 comments
Labels: autorelease: tagged

#215 - chore: Update rust CI

Pull Request - State: closed - Opened by tedil 2 months ago - 2 comments

#214 - fix: Sec and Stop coincide in SEPHS2

Pull Request - State: closed - Opened by tedil 2 months ago - 2 comments

#213 - fix: Fix incorrect seleno cds end

Pull Request - State: closed - Opened by tedil 3 months ago - 2 comments

#212 - chore(deps): bump codecov/codecov-action from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies, github_actions

#211 - chore: use repository field in Cargo.toml

Pull Request - State: closed - Opened by holtgrewe 3 months ago - 2 comments

#210 - chore: Use the repository instead of the homepage field in Cargo.toml

Pull Request - State: closed - Opened by szabgab 3 months ago - 1 comment

#209 - chore(deps): update cached requirement from 0.53.0 to 0.54.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies, rust

#208 - chore(deps): update thiserror requirement from 1.0 to 2.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies, rust

#207 - chore(deps): bump Swatinem/rust-cache from 2.7.3 to 2.7.5

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies, github_actions

#205 - chore(main): release 0.17.3

Pull Request - State: closed - Opened by varfish-bot 4 months ago - 2 comments
Labels: autorelease: tagged

#204 - fix: Add catch-all tag `Other` to account for future cdot tag changes

Pull Request - State: closed - Opened by tedil 4 months ago - 1 comment

#203 - chore(deps): update rstest requirement from 0.22 to 0.23

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, rust

#202 - chore(main): release 0.17.2

Pull Request - State: closed - Opened by varfish-bot 6 months ago - 1 comment
Labels: autorelease: tagged

#201 - fix: add support for tag 'GENCODE Primary' in cdot json

Pull Request - State: closed - Opened by tedil 6 months ago

#200 - chore(deps): update rstest requirement from 0.21 to 0.22

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, rust

#199 - fix: do not report deleted or duplicated reference in hgvs.c notation

Pull Request - State: closed - Opened by tedil 7 months ago - 3 comments

#198 - chore(main): release 0.17.1

Pull Request - State: closed - Opened by varfish-bot 7 months ago - 2 comments
Labels: autorelease: tagged

#197 - fix: add selenoprotein biotype

Pull Request - State: closed - Opened by tedil 7 months ago - 1 comment

#196 - chore(main): release 0.17.0

Pull Request - State: closed - Opened by varfish-bot 7 months ago - 2 comments
Labels: autorelease: tagged

#194 - Port over biocommon/hgvs#719 (Fix ins or dups where splice region is preserved)

Issue - State: open - Opened by holtgrewe 7 months ago
Labels: enhancement

#191 - chore(deps): update cached requirement from 0.52.0 to 0.53.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, rust

#190 - chore(main): release 0.16.3

Pull Request - State: closed - Opened by varfish-bot 7 months ago - 1 comment
Labels: autorelease: tagged

#189 - fix: BioType naming for Ig* types, derive Hash for BioType

Pull Request - State: closed - Opened by tedil 7 months ago

#188 - chore: derive `Hash` for `BioType`

Pull Request - State: closed - Opened by tedil 7 months ago

#187 - chore(deps): update bio requirement from 1.1 to 2.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, rust

#186 - chore(deps): update quick_cache requirement from 0.5 to 0.6

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, rust

#185 - chore(deps): update cached requirement from 0.51.4 to 0.52.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, rust

#184 - chore: fix some clippy lints

Pull Request - State: closed - Opened by tedil 7 months ago - 1 comment

#183 - fix: add biotype vaultRNA_primary_transcript

Pull Request - State: closed - Opened by tedil 7 months ago

#182 - chore(deps): bump actions/add-to-project from 1.0.1 to 1.0.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, github_actions

#181 - chore(deps): bump amannn/action-semantic-pull-request from 5.5.2 to 5.5.3

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, github_actions

#180 - fix: add biotype vaultRNA_primary_transcript

Pull Request - State: closed - Opened by tedil 8 months ago

#179 - fix: add partial field to cdot json representation struct

Pull Request - State: closed - Opened by tedil 8 months ago - 1 comment

#178 - chore(main): release 0.16.2

Pull Request - State: closed - Opened by varfish-bot 8 months ago - 2 comments
Labels: autorelease: tagged

#177 - chore(deps): update rustc-hash requirement from 1.1 to 2.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, rust

#176 - fix: add Serialize to data::cdot::json representations

Pull Request - State: closed - Opened by tedil 8 months ago - 1 comment

#174 - ci: do not fail if codecov submission fails

Pull Request - State: closed - Opened by holtgrewe 8 months ago

#173 - ci: remove unnecessary add-issue-to-project workflow

Pull Request - State: closed - Opened by holtgrewe 8 months ago - 1 comment

#172 - perf: cache mappers, avoid allocations, codons are arrays

Pull Request - State: closed - Opened by tedil 8 months ago - 1 comment

#171 - chore(deps): update rstest requirement from 0.18 to 0.21

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, rust

#170 - chore(main): release 0.16.1

Pull Request - State: closed - Opened by varfish-bot 9 months ago - 2 comments
Labels: autorelease: tagged

#169 - fix: use array instead of Vec for Codon representation (and other free perf improvements)

Pull Request - State: closed - Opened by tedil 10 months ago - 3 comments

#168 - chore(deps): bump amannn/action-semantic-pull-request from 5.4.0 to 5.5.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, github_actions

#167 - chore(deps): bump actions/add-to-project from 0.6.0 to 1.0.1

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, github_actions

#166 - chore(deps): update rstest requirement from 0.18 to 0.19

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, rust

#165 - chore(deps): update quick_cache requirement from 0.4 to 0.5

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, rust

#164 - chore(deps): bump actions/add-to-project from 0.6.0 to 1.0.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, github_actions

#163 - chore(deps): bump actions/add-to-project from 0.6.0 to 0.6.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, github_actions

#162 - chore(main): release 0.16.0

Pull Request - State: closed - Opened by varfish-bot 11 months ago - 1 comment
Labels: autorelease: tagged

#161 - feat: adding vertebrate mitochondrial code (#160)

Pull Request - State: closed - Opened by holtgrewe 11 months ago

#160 - Add chrMT genetic code

Issue - State: closed - Opened by holtgrewe 11 months ago
Labels: enhancement

#159 - chore(deps): bump actions/add-to-project from 0.5.0 to 0.6.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, github_actions

#158 - chore(main): release 0.15.0

Pull Request - State: closed - Opened by varfish-bot about 1 year ago - 2 comments
Labels: autorelease: tagged

#157 - chore: bumping dependencies

Pull Request - State: closed - Opened by holtgrewe about 1 year ago

#156 - chore(deps): bump Swatinem/rust-cache from 1.3.0 to 2.7.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#155 - chore(deps): bump amannn/action-semantic-pull-request from 3.4.0 to 5.4.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#154 - chore(deps): bump GoogleCloudPlatform/release-please-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#153 - chore(deps): bump actions/checkout from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#152 - chore(deps): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#151 - chore: common .github files

Pull Request - State: closed - Opened by holtgrewe about 1 year ago

#150 - chore(deps): update env_logger requirement from 0.10 to 0.11

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#149 - chore(main): release 0.14.1

Pull Request - State: closed - Opened by varfish-bot about 1 year ago - 1 comment
Labels: autorelease: tagged

#148 - fix: allow import of BioType guide_RNA

Pull Request - State: closed - Opened by holtgrewe about 1 year ago

#147 - chore(main): release 0.14.0

Pull Request - State: closed - Opened by varfish-bot about 1 year ago - 2 comments
Labels: autorelease: tagged

#146 - feat: adding support for selenoproteins (#145)

Pull Request - State: closed - Opened by holtgrewe about 1 year ago - 1 comment

#145 - Add support for selenoproteins

Issue - State: closed - Opened by holtgrewe about 1 year ago
Labels: enhancement

#144 - chore(deps): bump the noodles group with 1 update

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#143 - Address stop codon recoding / stop codon readthrough (SCR)

Issue - State: open - Opened by holtgrewe over 1 year ago - 2 comments
Labels: enhancement

#142 - chore(main): release 0.13.2

Pull Request - State: closed - Opened by varfish-bot over 1 year ago - 2 comments
Labels: autorelease: tagged

#141 - fix: add more biotypes from cdot JSON for vep110 release

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#140 - chore: extending extract_gene.py for multiple HGNC IDs

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#139 - chore(main): release 0.13.1

Pull Request - State: closed - Opened by varfish-bot over 1 year ago - 1 comment
Labels: autorelease: tagged

#138 - fix: adding back missing Gene::biotype member

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#137 - chore(main): release 0.13.0

Pull Request - State: closed - Opened by varfish-bot over 1 year ago - 1 comment
Labels: autorelease: tagged

#136 - feat: make compatible with cdot v0.2.21

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#135 - feat: move out assemblies to biocommons_bioutils crate (#134)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#134 - Switch to using biocommons-bioutils-rs crate for assembly info

Issue - State: closed - Opened by holtgrewe over 1 year ago
Labels: enhancement

#133 - chore(main): release 0.12.0

Pull Request - State: closed - Opened by varfish-bot over 1 year ago - 2 comments
Labels: autorelease: tagged

#132 - fix: problem with annotating stop_retained insertions (#131)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago - 1 comment

#131 - byte index out of bounds for GRCh37:10:5139789:A:AGTG

Issue - State: closed - Opened by holtgrewe over 1 year ago - 3 comments
Labels: bug

#130 - Allow predictions even for transcripts that have more than one stop codon

Issue - State: open - Opened by holtgrewe over 1 year ago - 1 comment
Labels: enhancement

#129 - chore(main): release 0.11.0

Pull Request - State: closed - Opened by varfish-bot over 1 year ago - 1 comment
Labels: autorelease: tagged

#128 - feat: various dependency updates, bump version to 0.11.0

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#127 - chore(deps): update quick_cache requirement from 0.3 to 0.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#126 - Support representing repeated sequences from varnomen

Issue - State: open - Opened by holtgrewe over 1 year ago
Labels: enhancement

#125 - chore: adding templates for issues and pull requests

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#124 - chore(deps): update rstest requirement from 0.17 to 0.18

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#123 - chore(deps): bump the noodles group with 1 update

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#122 - Use features to opt-in into sqlite3 and libpostgres dependencies

Issue - State: open - Opened by holtgrewe over 1 year ago
Labels: enhancement

#121 - ci: set release-please token for varfish-bot

Pull Request - State: closed - Opened by holtgrewe over 1 year ago