Ecosyste.ms: Issues

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GitHub / vaquerizaslab/tadtool issues and pull requests

#29 - Can't use window_sizes in tadtool plot

Issue - State: open - Opened by Ziwei-Liu 5 months ago

#27 - python functionality broken

Issue - State: closed - Opened by benayang almost 3 years ago - 4 comments

#26 - Using .hic/.cool files

Issue - State: open - Opened by MyBiscuit about 3 years ago - 2 comments

#25 - Sugget to add python2.7 to documentation

Issue - State: open - Opened by qiyubio over 3 years ago - 5 comments

#24 - Don't understand windows_size parameter in tadtool tad

Issue - State: open - Opened by rachelzhu123 almost 4 years ago - 2 comments

#22 - Is it possible to output insulation index?

Issue - State: open - Opened by rikrdo89 almost 5 years ago - 1 comment

#21 - Range of bins in bed file needs to exactly match all bins in matrix

Issue - State: open - Opened by rikrdo89 almost 5 years ago - 5 comments

#20 - Raw or Iced matrices as input?

Issue - State: closed - Opened by rikrdo89 almost 5 years ago - 2 comments

#19 - Regions must be the same length as rows in matrix!

Issue - State: closed - Opened by hzaumsq about 5 years ago - 7 comments

#18 - IS values differences

Issue - State: closed - Opened by LeonardoLed over 5 years ago - 4 comments

#17 - Index out of bounds for axis

Issue - State: closed - Opened by jennifm over 6 years ago - 4 comments

#16 - Tadtool tads stops after processing one chromosome

Issue - State: closed - Opened by MatStz over 6 years ago - 4 comments

#15 - bug when install tadtool

Issue - State: closed - Opened by zyxplus over 6 years ago - 1 comment

#14 - Values IS in command "tads"

Issue - State: closed - Opened by LeonardoLed over 6 years ago - 1 comment

#13 - Limitations of using software？

Issue - State: closed - Opened by RuiqinZheng over 6 years ago - 1 comment

#12 - Error in plot

Issue - State: closed - Opened by RuiqinZheng almost 7 years ago - 1 comment

#11 - Error in Matplotlib in TADtool

Issue - State: closed - Opened by LeonardoLed almost 7 years ago - 2 comments

#10 - TADTool in Genome wide study

Issue - State: closed - Opened by LeonardoLed almost 7 years ago - 2 comments

#9 - Problem with the format HiC matrix generated by HicPro

Issue - State: closed - Opened by LeonardoLed almost 7 years ago - 2 comments

#8 - BED file should be 0-based, but examples here are 1-based

Issue - State: closed - Opened by hansiu almost 7 years ago - 1 comment

#7 - Errors on 6-column bed file

Issue - State: closed - Opened by liz-is about 7 years ago - 1 comment

#6 - tadtool not loading automatically

Issue - State: closed - Opened by farshadf over 7 years ago - 1 comment

#5 - Unable to get output for my own data

Issue - State: closed - Opened by mthimma almost 8 years ago - 14 comments

#4 - Minor issue with progress bar

Issue - State: closed - Opened by Krannich479 almost 8 years ago - 2 comments

#3 - Unable to run example data on Ubuntu

Issue - State: closed - Opened by mthimma about 8 years ago - 21 comments

#2 - tkinter.TclError: nodisplay name and no $DISPLAY environment variable

Issue - State: closed - Opened by lwtan90 about 8 years ago - 2 comments

#1 - tads command only produces output for one chromosome

Issue - State: closed - Opened by gangxuehzau about 8 years ago - 4 comments