Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / vanvalenlab/kiosk-redis-consumer issues and pull requests

#200 - Add linting with `ruff`

Issue - State: open - Opened by msschwartz21 over 1 year ago

#199 - Bump deepcell version and add tracking parameters

Pull Request - State: closed - Opened by msschwartz21 over 1 year ago
Labels: chore

#198 - Issues with request output from consumer?

Issue - State: open - Opened by ngreenwald over 2 years ago

#197 - Recent changes to consumer?

Issue - State: closed - Opened by ngreenwald over 2 years ago - 3 comments

#196 - Save and expose sorted output_names

Pull Request - State: closed - Opened by elaubsch over 2 years ago
Labels: fix

#195 - Update to Tensorflow 2.8

Pull Request - State: closed - Opened by elaubsch over 2 years ago
Labels: chore

#194 - Roll forward to revert push to master

Pull Request - State: closed - Opened by elaubsch over 2 years ago
Labels: fix

#193 - Add imagecodcs to requirements

Pull Request - State: closed - Opened by elaubsch over 2 years ago
Labels: fix

#192 - Support loading of images with LZW compression

Issue - State: closed - Opened by msschwartz21 over 2 years ago
Labels: bug

#191 - Expose GRPC model output names

Pull Request - State: closed - Opened by elaubsch over 2 years ago - 1 comment
Labels: fix

#190 - Cache pip environment for Github actions

Pull Request - State: closed - Opened by elaubsch over 2 years ago
Labels: chore

#189 - Add multi-batch prediction for the segmentation and Polaris consumers

Pull Request - State: closed - Opened by elaubsch almost 3 years ago
Labels: enhancement

#188 - Update assignment for channels variable in Caliban consumer

Pull Request - State: closed - Opened by elaubsch almost 3 years ago
Labels: fix

#187 - Update assignment for channels variable in Caliban consumer

Pull Request - State: closed - Opened by elaubsch almost 3 years ago

#186 - Create large_image consumer to support bigger images

Issue - State: open - Opened by ngreenwald almost 3 years ago - 1 comment

#185 - Resolve jinja2 dependency error for sphinx

Pull Request - State: closed - Opened by msschwartz21 almost 3 years ago
Labels: fix

#184 - Jinja 2 imports for Sphinx have been deprecated

Issue - State: closed - Opened by elaubsch almost 3 years ago

#183 - Polaris super consumer

Pull Request - State: closed - Opened by elaubsch almost 3 years ago
Labels: enhancement

#182 - Update copyright to 2022

Pull Request - State: closed - Opened by msschwartz21 about 3 years ago
Labels: chore

#181 - Adding Polaris consumer

Pull Request - State: closed - Opened by elaubsch about 3 years ago
Labels: enhancement

#180 - Refactor TrackingConsumer to CalibanConsumer.

Pull Request - State: closed - Opened by willgraf about 3 years ago
Labels: enhancement

#179 - Verify image size before loading the image.

Pull Request - State: open - Opened by willgraf about 3 years ago - 1 comment
Labels: fix

#178 - Update dependencies and upgrade Docker base image.

Pull Request - State: closed - Opened by willgraf about 3 years ago
Labels: chore

#177 - Upgrade `deepcell` to 0.11.x

Pull Request - State: closed - Opened by willgraf about 3 years ago
Labels: chore

#176 - Prevent the consumer from loading images that are too large.

Issue - State: open - Opened by willgraf about 3 years ago
Labels: enhancement

#175 - Define batch size and pass to app.predict.

Pull Request - State: closed - Opened by willgraf over 3 years ago
Labels: fix

#174 - Add support for larger images

Issue - State: closed - Opened by ngreenwald over 3 years ago - 2 comments
Labels: enhancement

#173 - Ignore negative batch dimensions when calculating batch_size.

Pull Request - State: closed - Opened by willgraf over 3 years ago
Labels: fix

#172 - Add new `detect_dimension_order` to detect the dim ordering string.

Pull Request - State: closed - Opened by willgraf over 3 years ago - 1 comment
Labels: enhancement

#171 - Create GitHub Workflow for the release-drafter.

Pull Request - State: closed - Opened by willgraf almost 4 years ago
Labels: chore

#170 - Add release-drafter template file.

Pull Request - State: closed - Opened by willgraf almost 4 years ago
Labels: chore

#169 - Communicate uploaded image dimension order back to kiosk-frontend

Issue - State: closed - Opened by tddough98 almost 4 years ago
Labels: enhancement

#168 - Update for new tracking approach

Pull Request - State: closed - Opened by MekWarrior almost 4 years ago - 1 comment
Labels: enhancement, draft

#167 - get_batch_size can calculate invalid batch_size

Issue - State: closed - Opened by MekWarrior almost 4 years ago
Labels: bug

#165 - Update copyright year to 2021.

Pull Request - State: closed - Opened by willgraf almost 4 years ago

#164 - Add predicting status update to MesmerConsumer

Pull Request - State: closed - Opened by willgraf almost 4 years ago

#163 - Validate image is smaller than MAX_IMAGE_HEIGHT and MAX_IMAGE_WIDTH

Pull Request - State: closed - Opened by willgraf almost 4 years ago

#162 - Allow optional channels to be defined to select a subset of channels for the job.

Pull Request - State: closed - Opened by willgraf almost 4 years ago - 1 comment

#161 - Add tests for PredictClient gRPC methods.

Pull Request - State: closed - Opened by willgraf almost 4 years ago

#160 - Refactor MultiplexConsumer to MesmerConsumer.

Pull Request - State: closed - Opened by willgraf almost 4 years ago - 1 comment

#159 - Select compartment via MULTIPLEX_COMPARTMENT environment variable.

Pull Request - State: closed - Opened by willgraf almost 4 years ago - 1 comment

#158 - Update TrackingConsumer to use GrpcModelWrapper

Pull Request - State: closed - Opened by willgraf about 4 years ago

#156 - Updates for TF2 Version of DeepCell Tracking

Pull Request - State: closed - Opened by MekWarrior about 4 years ago

#155 - Consumer crashes if it cannot connect to Redis.

Issue - State: open - Opened by willgraf about 4 years ago
Labels: bug, wontfix

#154 - Refactor consumers to use deepcell.applications as a workflow definition.

Pull Request - State: closed - Opened by willgraf about 4 years ago
Labels: enhancement

#153 - Revert output filename suffix.

Pull Request - State: closed - Opened by willgraf about 4 years ago

#152 - Longer `GRPC_TIMEOUT` for larger upload support

Issue - State: closed - Opened by ackagel about 4 years ago - 11 comments

#150 - predict_small_images still fails on undersized images

Issue - State: closed - Opened by ngreenwald about 4 years ago - 1 comment
Labels: bug

#149 - Resize outputs to target shape in `save_output`.

Pull Request - State: closed - Opened by willgraf about 4 years ago

#148 - Padding bugfix

Pull Request - State: closed - Opened by ngreenwald about 4 years ago

#147 - Set a MAX_SCALE and MIN_SCALE, raise ValueError if provided scale is outside.

Pull Request - State: closed - Opened by willgraf about 4 years ago - 1 comment

#146 - Use environment variables to define preprocessing for ImageFileConsumer

Pull Request - State: closed - Opened by willgraf about 4 years ago

#145 - Rescale doesn't preserve original image size

Issue - State: closed - Opened by ngreenwald about 4 years ago
Labels: bug

#144 - Return all output signatures from gRPC response.

Pull Request - State: closed - Opened by willgraf about 4 years ago
Labels: enhancement

#143 - Build docker images on all published releases.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#142 - remove TF_VERSION from environment in docker-image.yaml

Pull Request - State: closed - Opened by willgraf over 4 years ago

#141 - Fix build status badge in README

Pull Request - State: closed - Opened by willgraf over 4 years ago

#140 - Migrate CI/CD to GitHub Actions.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#139 - Update multiplex model

Pull Request - State: closed - Opened by ngreenwald over 4 years ago

#138 - Bump toolbox version

Pull Request - State: closed - Opened by ngreenwald over 4 years ago

#137 - Allow kwargs to control post-processing

Issue - State: open - Opened by ngreenwald over 4 years ago
Labels: enhancement

#136 - Add support for multiple compartments in multiplex_consumer

Issue - State: closed - Opened by ngreenwald over 4 years ago
Labels: enhancement

#135 - Add a "none" pre/post-process option to do nothing

Pull Request - State: closed - Opened by willgraf over 4 years ago

#134 - Fix bug where multiple saved files overwrite eachother.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#132 - Add image shape to error message

Pull Request - State: closed - Opened by ngreenwald over 4 years ago - 2 comments

#131 - separate wrapper function

Pull Request - State: closed - Opened by ngreenwald over 4 years ago - 5 comments

#130 - Updated multiplex model

Pull Request - State: closed - Opened by ngreenwald over 4 years ago

#129 - Fix test dependencies for Python 3.5 versioning issue.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#128 - Set a maximum image height/width.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#127 - Multiplex consumers are getting evicted due to large memory overhead.

Issue - State: closed - Opened by willgraf over 4 years ago - 1 comment
Labels: bug

#126 - Update deepcell-toolbox and deepcell-tracking to latest patches.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#125 - Validate multiplex images

Pull Request - State: closed - Opened by ngreenwald over 4 years ago - 5 comments

#124 - Deepcell 3d consumer

Pull Request - State: closed - Opened by cdpavelchek over 4 years ago - 1 comment

#123 - Validate input data

Issue - State: closed - Opened by ngreenwald over 4 years ago - 2 comments

#122 - Update copyrights for 2020.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#121 - Multiplexed consumer

Pull Request - State: closed - Opened by cdpavelchek over 4 years ago - 3 comments

#120 - Improve custom consumer documentation.

Pull Request - State: closed - Opened by willgraf over 4 years ago
Labels: documentation

#119 - Update MIBI consumer to inherit from ImageFileConsumer.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#118 - fix the license URL for some testing file copyrights.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#117 - Improved testing coverage using fakeredis and pytest-mock

Pull Request - State: closed - Opened by willgraf over 4 years ago

#116 - Filter out finished statuses in the BaseConsumer

Issue - State: closed - Opened by willgraf over 4 years ago - 1 comment
Labels: enhancement

#115 - Mibi consumer updated

Pull Request - State: closed - Opened by cdpavelchek over 4 years ago - 2 comments

#114 - Improve documentation for building new consumers.

Issue - State: closed - Opened by willgraf over 4 years ago - 2 comments
Labels: documentation

#113 - add standard statuses to tracking consumer

Pull Request - State: closed - Opened by willgraf over 4 years ago

#112 - Properly batch tracking requests

Pull Request - State: closed - Opened by willgraf over 4 years ago

#111 - fail invalid hashes to remove them from the job queue.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#110 - Upgrade TrackingConsumer with the new functionality.

Pull Request - State: closed - Opened by willgraf over 4 years ago

#109 - Re-vamp TrackingConsumer

Issue - State: closed - Opened by willgraf over 4 years ago
Labels: enhancement

#105 - add requests.exceptions.ReadTimeout as a retry-able error

Pull Request - State: closed - Opened by willgraf almost 5 years ago

#104 - Extend TensorFlowServingConsumer.predict for multiple input tensors.

Issue - State: closed - Opened by willgraf almost 5 years ago - 1 comment
Labels: enhancement, help wanted

#100 - Always assign model_version in the PredictClient.

Pull Request - State: closed - Opened by willgraf almost 5 years ago

#99 - Use UUID4 to create unique names instead of hashlib.

Pull Request - State: closed - Opened by willgraf almost 5 years ago

#98 - wait DO_NOTHING_TIMEOUT seconds after consume() calls that do no work.

Pull Request - State: closed - Opened by willgraf almost 5 years ago

#97 - Use UUID instead of hashing for unique identifiers.

Issue - State: closed - Opened by willgraf almost 5 years ago
Labels: enhancement

#96 - Update README for ease-of-use.

Pull Request - State: closed - Opened by willgraf almost 5 years ago

#95 - Replace TF_TENSOR_NAME with data from GetModelMetadata Response

Issue - State: closed - Opened by willgraf almost 5 years ago
Labels: enhancement