vanvalenlab/deepcell-label issues and pull requests

#104 - rgb mode rendering/image thresholding issue

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 5 comments
Labels: bug

#104 - rgb mode rendering/image thresholding issue

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 5 comments
Labels: bug

#103 - Add zoom capabilities to desktop

Pull Request - State: closed - Opened by geneva-miller almost 5 years ago

#103 - Add zoom capabilities to desktop

Pull Request - State: closed - Opened by geneva-miller almost 5 years ago

#102 - remove small holes from label action

Issue - State: closed - Opened by geneva-miller almost 5 years ago
Labels: enhancement

#101 - default parameters when opening caliban

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 2 comments

#100 - check if progress has been saved before quitting

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 2 comments
Labels: duplicate

#100 - check if progress has been saved before quitting

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 2 comments
Labels: duplicate

#99 - new border segmentation has different opacity when being created

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 2 comments
Labels: bug

#99 - new border segmentation has different opacity when being created

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 2 comments
Labels: bug

#98 - Border overlay is too thick

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 1 comment
Labels: enhancement

#98 - Border overlay is too thick

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 1 comment
Labels: enhancement

#97 - grey out text when waiting for keyboard response

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 2 comments
Labels: enhancement

#97 - grey out text when waiting for keyboard response

Issue - State: closed - Opened by ngreenwald almost 5 years ago - 2 comments
Labels: enhancement

#96 - disable unused channels

Issue - State: closed - Opened by ngreenwald about 5 years ago - 5 comments
Labels: enhancement

#96 - disable unused channels

Issue - State: closed - Opened by ngreenwald about 5 years ago - 5 comments
Labels: enhancement

#95 - more intuitive readout for color scaling

Issue - State: closed - Opened by ngreenwald about 5 years ago - 2 comments
Labels: enhancement

#95 - more intuitive readout for color scaling

Issue - State: closed - Opened by ngreenwald about 5 years ago - 2 comments
Labels: enhancement

#94 - watershed failsafe

Issue - State: closed - Opened by ngreenwald about 5 years ago - 1 comment
Labels: enhancement

#94 - watershed failsafe

Issue - State: closed - Opened by ngreenwald about 5 years ago - 1 comment
Labels: enhancement

#93 - Standardize labels display across pixel and label editing mode

Issue - State: closed - Opened by ngreenwald about 5 years ago - 9 comments
Labels: enhancement

#93 - Standardize labels display across pixel and label editing mode

Issue - State: closed - Opened by ngreenwald about 5 years ago - 9 comments
Labels: enhancement

#92 - different modes with limited features available

Issue - State: closed - Opened by ngreenwald about 5 years ago - 7 comments
Labels: enhancement

#92 - different modes with limited features available

Issue - State: closed - Opened by ngreenwald about 5 years ago - 7 comments
Labels: enhancement

#91 - non-specific conversion brush

Issue - State: closed - Opened by ngreenwald about 5 years ago - 6 comments
Labels: enhancement

#91 - non-specific conversion brush

Issue - State: closed - Opened by ngreenwald about 5 years ago - 6 comments
Labels: enhancement

#89 - Desktop/CalibanWindow, CalibanBrush classes

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#89 - Desktop/CalibanWindow, CalibanBrush classes

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#88 - browser window should not scroll when adjusting brightness

Issue - State: closed - Opened by geneva-miller about 5 years ago - 1 comment
Labels: enhancement

#88 - browser window should not scroll when adjusting brightness

Issue - State: closed - Opened by geneva-miller about 5 years ago - 1 comment
Labels: enhancement

#87 - Refactor, document desktop npz class

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#87 - Refactor, document desktop npz class

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#86 - Browser actions sometimes don't get sent correctly

Issue - State: closed - Opened by geneva-miller about 5 years ago - 8 comments
Labels: bug, help wanted, PRIORITY

#86 - Browser actions sometimes don't get sent correctly

Issue - State: closed - Opened by geneva-miller about 5 years ago - 8 comments
Labels: bug, help wanted, PRIORITY

#85 - caliban crashes when no cells in image

Issue - State: closed - Opened by ngreenwald about 5 years ago - 4 comments

#85 - caliban crashes when no cells in image

Issue - State: closed - Opened by ngreenwald about 5 years ago - 4 comments

#83 - browser should listen for mouse outside of canvas in some cases

Issue - State: closed - Opened by geneva-miller about 5 years ago - 2 comments
Labels: enhancement

#83 - browser should listen for mouse outside of canvas in some cases

Issue - State: closed - Opened by geneva-miller about 5 years ago - 2 comments
Labels: enhancement

#82 - support cell type classification

Issue - State: closed - Opened by ngreenwald about 5 years ago - 3 comments
Labels: enhancement

#82 - support cell type classification

Issue - State: closed - Opened by ngreenwald about 5 years ago - 3 comments
Labels: enhancement

#81 - Add advanced pixel-editing features to browser npz

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#81 - Add advanced pixel-editing features to browser npz

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#80 - refine parent assignment in trk files

Issue - State: closed - Opened by geneva-miller about 5 years ago - 1 comment
Labels: enhancement

#80 - refine parent assignment in trk files

Issue - State: closed - Opened by geneva-miller about 5 years ago - 1 comment
Labels: enhancement

#79 - Display color overlays additional channel

Issue - State: closed - Opened by ngreenwald about 5 years ago - 1 comment
Labels: enhancement

#79 - Display color overlays additional channel

Issue - State: closed - Opened by ngreenwald about 5 years ago - 1 comment
Labels: enhancement

#78 - Refactor (browser)

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#78 - Refactor (browser)

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#77 - Updated readme

Pull Request - State: closed - Opened by ngreenwald about 5 years ago

#77 - Updated readme

Pull Request - State: closed - Opened by ngreenwald about 5 years ago

#76 - "c- relabel selected cell with an unused label" doesn't work in npz mode

Issue - State: closed - Opened by ngreenwald about 5 years ago - 5 comments

#76 - "c- relabel selected cell with an unused label" doesn't work in npz mode

Issue - State: closed - Opened by ngreenwald about 5 years ago - 5 comments

#75 - Consolidate browser actions to use just one POST request

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#75 - Consolidate browser actions to use just one POST request

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#74 - colormaps should be robust to different ranges of labels

Issue - State: closed - Opened by geneva-miller about 5 years ago - 20 comments

#74 - colormaps should be robust to different ranges of labels

Issue - State: closed - Opened by geneva-miller about 5 years ago - 20 comments

#73 - Check that all labels are sequential

Issue - State: closed - Opened by MekWarrior about 5 years ago - 4 comments
Labels: enhancement

#73 - Check that all labels are sequential

Issue - State: closed - Opened by MekWarrior about 5 years ago - 4 comments
Labels: enhancement

#72 - Update browser trk mode

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#72 - Update browser trk mode

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#71 - add timestamps to db rows

Issue - State: closed - Opened by geneva-miller about 5 years ago - 2 comments

#71 - add timestamps to db rows

Issue - State: closed - Opened by geneva-miller about 5 years ago - 2 comments

#70 - favicon for browser caliban

Issue - State: closed - Opened by geneva-miller about 5 years ago - 2 comments

#70 - favicon for browser caliban

Issue - State: closed - Opened by geneva-miller about 5 years ago - 2 comments

#69 - Change database to MySQL

Pull Request - State: closed - Opened by geneva-miller about 5 years ago - 1 comment

#68 - reduce lag for browser caliban

Issue - State: closed - Opened by geneva-miller about 5 years ago - 7 comments

#68 - reduce lag for browser caliban

Issue - State: closed - Opened by geneva-miller about 5 years ago - 7 comments

#67 - Feature/desktop/relabeling options

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#67 - Feature/desktop/relabeling options

Pull Request - State: closed - Opened by geneva-miller about 5 years ago

#66 - Upgrade Pillow version

Pull Request - State: closed - Opened by MekWarrior about 5 years ago

#66 - Upgrade Pillow version

Pull Request - State: closed - Opened by MekWarrior about 5 years ago

#65 - Bump pillow from 6.0.0 to 6.2.0 in /browser

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#65 - Bump pillow from 6.0.0 to 6.2.0 in /browser

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#64 - eb deploy fails for browser caliban

Issue - State: closed - Opened by geneva-miller over 5 years ago - 4 comments
Labels: bug, help wanted

#64 - eb deploy fails for browser caliban

Issue - State: closed - Opened by geneva-miller over 5 years ago - 4 comments
Labels: bug, help wanted

#63 - Caliban browser

Pull Request - State: closed - Opened by geneva-miller over 5 years ago

#63 - Caliban browser

Pull Request - State: closed - Opened by geneva-miller over 5 years ago

#62 - add single-frame versions of actions

Issue - State: closed - Opened by geneva-miller over 5 years ago - 2 comments
Labels: enhancement

#62 - add single-frame versions of actions

Issue - State: closed - Opened by geneva-miller over 5 years ago - 2 comments
Labels: enhancement

#61 - actions should use add and del cell info helper functions

Issue - State: closed - Opened by geneva-miller over 5 years ago - 2 comments

#61 - actions should use add and del cell info helper functions

Issue - State: closed - Opened by geneva-miller over 5 years ago - 2 comments

#60 - save checkpoint or undo feature for browser users

Issue - State: closed - Opened by geneva-miller over 5 years ago - 4 comments
Labels: enhancement

#60 - save checkpoint or undo feature for browser users

Issue - State: closed - Opened by geneva-miller over 5 years ago - 4 comments
Labels: enhancement

#59 - submit button should look more like a button

Issue - State: closed - Opened by geneva-miller over 5 years ago - 3 comments

#59 - submit button should look more like a button

Issue - State: closed - Opened by geneva-miller over 5 years ago - 3 comments

#58 - DeepCell Label should be tested for accessibility

Issue - State: open - Opened by geneva-miller over 5 years ago - 2 comments
Labels: enhancement

#58 - DeepCell Label should be tested for accessibility

Issue - State: open - Opened by geneva-miller over 5 years ago - 2 comments
Labels: enhancement

#57 - Caliban should be able to open files with no annotations

Issue - State: closed - Opened by geneva-miller over 5 years ago - 1 comment
Labels: bug

#57 - Caliban should be able to open files with no annotations

Issue - State: closed - Opened by geneva-miller over 5 years ago - 1 comment
Labels: bug

GitHub / vanvalenlab/deepcell-label issues and pull requests