Ecosyste.ms: Issues

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GitHub / valeriupredoi/PyActiveStorage issues and pull requests

#170 - remove review team from conda lock generation GH workflow

Pull Request - State: closed - Opened by valeriupredoi 10 months ago

#169 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago
Labels: testing, condalock, automatedPR

#168 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago
Labels: testing, condalock, automatedPR

#167 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago
Labels: testing, condalock, automatedPR

#166 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago
Labels: testing, condalock, automatedPR

#165 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago
Labels: testing, condalock, automatedPR

#164 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago
Labels: testing, condalock, automatedPR

#163 - Pin `numcodecs>=0.12` to avoid compression kerfuffle for Python<3.12

Pull Request - State: closed - Opened by valeriupredoi 12 months ago - 1 comment
Labels: testing, installation

#162 - `numcodecs==0.11` is creating compression confusion and test fail

Issue - State: closed - Opened by valeriupredoi 12 months ago
Labels: testing, installation

#160 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago
Labels: testing, condalock, automatedPR

#159 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago
Labels: testing, condalock, automatedPR

#158 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: testing, condalock, automatedPR

#157 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: testing, condalock, automatedPR

#156 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: testing, condalock, automatedPR

#155 - update PyPI build action to latest v4

Pull Request - State: closed - Opened by valeriupredoi about 1 year ago - 1 comment
Labels: installation

#154 - Support and test with Python=3.12

Pull Request - State: closed - Opened by valeriupredoi about 1 year ago - 1 comment
Labels: installation

#153 - Python 3.12 is now out and stable

Issue - State: closed - Opened by valeriupredoi about 1 year ago
Labels: installation

#152 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: testing, condalock, automatedPR

#151 - simplify Github Actions tests by adding a default shell initialized at the top

Pull Request - State: closed - Opened by valeriupredoi about 1 year ago - 1 comment
Labels: enhancement, testing

#150 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: testing, condalock, automatedPR

#149 - first draft document on performance

Pull Request - State: closed - Opened by valeriupredoi about 1 year ago - 1 comment
Labels: documentation

#148 - [DRAFT] Try start quantifying performance of Active vs no Active

Pull Request - State: closed - Opened by valeriupredoi about 1 year ago - 2 comments
Labels: testing, storage-S3

#147 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: testing, condalock, automatedPR

#146 - Streamline call to `kerchunk.SingleHdf5ToZarr` and add some performance metrics

Pull Request - State: closed - Opened by valeriupredoi about 1 year ago - 16 comments
Labels: data handling

#145 - Where is the table of supported values for compression and filters?

Issue - State: open - Opened by bnlawrence about 1 year ago - 2 comments

#144 - update script that starts minio

Pull Request - State: closed - Opened by valeriupredoi about 1 year ago - 2 comments
Labels: bug

#143 - Python to C Hello World

Issue - State: open - Opened by bnlawrence about 1 year ago - 2 comments

#142 - Minio fails to start in our Github Actions

Issue - State: closed - Opened by valeriupredoi about 1 year ago
Labels: bug

#141 - Parallelise chunk processing

Pull Request - State: closed - Opened by markgoddard about 1 year ago - 4 comments

#140 - NetCDF to Zarr translation downloads chunk data from S3

Issue - State: closed - Opened by markgoddard about 1 year ago - 5 comments
Labels: bug, storage-S3

#139 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: testing, condalock, automatedPR

#138 - Always load netCDF metadata

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 2 comments
Labels: bug

#137 - Passing missing data values to constructor fails with S3 storage backend

Issue - State: closed - Opened by markgoddard over 1 year ago - 1 comment
Labels: bug

#136 - Support GZip/Zlib compression and Shuffle filter for S3

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 2 comments

#135 - Use a temporary file for Zarr group JSON

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 1 comment

#134 - Zarr group JSON file issues

Issue - State: closed - Opened by markgoddard over 1 year ago - 2 comments
Labels: bug

#133 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#132 - Add support for byte order (endianness)

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 3 comments

#131 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#130 - Add support for missing data in S3 storage backend

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 2 comments
Labels: enhancement, storage-S3

#129 - Rename S3 Active Storage to Reductionist

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 3 comments

#128 - S3: Use returned count header

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 2 comments

#127 - Support missing data for S3 backend

Issue - State: closed - Opened by markgoddard over 1 year ago
Labels: enhancement

#126 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#124 - [S3 netCDF4] `h5netcdf` is not setting a mask on the data

Issue - State: closed - Opened by valeriupredoi over 1 year ago - 1 comment
Labels: bug

#123 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#122 - Fix missing data tests with correct behaviour for when `USE_S3=True` for S3 storage

Pull Request - State: closed - Opened by valeriupredoi over 1 year ago - 5 comments
Labels: enhancement, testing

#121 - Parallelise requests to S3 active storage

Issue - State: closed - Opened by markgoddard over 1 year ago
Labels: enhancement

#120 - Add support for compressed and filtered datasets on S3 storage

Issue - State: closed - Opened by markgoddard over 1 year ago
Labels: enhancement

#119 - Support Zlib compression and shuffle filter for local storage

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 7 comments
Labels: enhancement

#118 - Add support for compressed and shuffled datasets on local storage

Issue - State: closed - Opened by markgoddard over 1 year ago - 1 comment
Labels: enhancement

#117 - Refactor test_harness.py to use native pytest

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 1 comment
Labels: testing

#115 - S3: Improve s3 storage type unit tests

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 1 comment
Labels: testing

#114 - Improve unit testing of Active with s3 storage type

Issue - State: closed - Opened by markgoddard over 1 year ago - 3 comments
Labels: testing

#113 - Test behaviour of S3 tests in light of Issue #111 and implement correct use of USE_S3 flag

Pull Request - State: closed - Opened by valeriupredoi over 1 year ago - 7 comments
Labels: testing

#112 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#111 - S3 integration tests sometimes hang when run in GitHub Actions

Issue - State: closed - Opened by markgoddard over 1 year ago - 17 comments
Labels: bug

#110 - Missing data integration tests are not testing missing data correctly

Issue - State: closed - Opened by markgoddard over 1 year ago - 7 comments
Labels: bug, testing

#109 - S3: Avoid referencing USE_S3 in Active and use s3:// URL to determine bucket name

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 3 comments
Labels: storage-S3

#108 - Avoid referencing USE_S3 in Active library code

Issue - State: closed - Opened by markgoddard over 1 year ago
Labels: enhancement

#107 - Use s3:// URL to determine bucket name

Issue - State: closed - Opened by markgoddard over 1 year ago
Labels: enhancement

#106 - S3/Minio integration tests are not using S3

Issue - State: closed - Opened by markgoddard over 1 year ago - 1 comment
Labels: bug, testing

#105 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#104 - Fix test_missing to avoid duplicate tests

Pull Request - State: closed - Opened by markgoddard over 1 year ago
Labels: bug, testing

#103 - Add pull request checklist template

Pull Request - State: closed - Opened by valeriupredoi over 1 year ago - 1 comment
Labels: standards

#102 - Best practices for pull requests

Issue - State: closed - Opened by valeriupredoi over 1 year ago - 1 comment
Labels: standards

#101 - test_missing and test_partially_missing_data are identical

Issue - State: closed - Opened by markgoddard over 1 year ago - 1 comment

#100 - Fix missing data tests

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 2 comments

#99 - Use local storage for missing data reference

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 1 comment

#98 - Fix test_missing

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 8 comments

#97 - Adapt integration tests for S3 storage backend

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 1 comment

#96 - S3 exploratory tests: Don't remove files committed to repo

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 1 comment

#95 - netcdf4-python support for s3

Issue - State: open - Opened by bnlawrence over 1 year ago - 18 comments
Labels: enhancement

#94 - S3 support for a file which is not on active storage

Issue - State: open - Opened by bnlawrence over 1 year ago - 2 comments

#93 - Infer `storage_type` from file name (always?)

Issue - State: open - Opened by valeriupredoi over 1 year ago - 2 comments
Labels: standards

#92 - fix api discrepancy between zarr 2.14+ and 2.15

Pull Request - State: closed - Opened by valeriupredoi over 1 year ago
Labels: bug

#91 - S3 reduce chunk needs to always return count

Issue - State: closed - Opened by bnlawrence over 1 year ago - 4 comments

#90 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#89 - Add S3 (with Minio) netCDF open/read and processing and exploratory tests

Pull Request - State: closed - Opened by valeriupredoi over 1 year ago - 2 comments
Labels: enhancement, testing

#88 - Add some basic S3 unit tests

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 1 comment
Labels: testing

#87 - mark s3 unit tests

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 1 comment

#86 - Pin numpy !=1.24.3 to avoid severe masking bug

Pull Request - State: closed - Opened by valeriupredoi over 1 year ago
Labels: installation

#85 - Towards reductions along a subset of axes

Issue - State: open - Opened by davidhassell over 1 year ago - 3 comments
Labels: enhancement

#84 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#83 - Drop support for Python=3.8

Pull Request - State: closed - Opened by valeriupredoi over 1 year ago - 1 comment
Labels: installation

#82 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#81 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#80 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#79 - Fix conda lock file creation and modernize the workflow

Pull Request - State: closed - Opened by valeriupredoi over 1 year ago - 1 comment
Labels: enhancement, installation

#77 - Add initial support for S3 active storage

Pull Request - State: closed - Opened by markgoddard over 1 year ago - 4 comments
Labels: enhancement

#76 - Support endianness

Issue - State: closed - Opened by markgoddard over 1 year ago

#75 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#74 - add locking around version 2 processing in Active's getitem

Pull Request - State: closed - Opened by valeriupredoi over 1 year ago - 3 comments
Labels: enhancement

#73 - Fix condalock pick up Python 3.11 again - this is a manual update using auto generation

Pull Request - State: closed - Opened by valeriupredoi over 1 year ago - 1 comment
Labels: condalock

#72 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: testing, condalock, automatedPR

#71 - [Condalock] Update condalock file

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: testing, condalock, automatedPR