Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / uw-cmg/StructOpt_modular issues and pull requests

#55 - move the logic of checking the V(k) file into one fuction

Issue - State: closed - Opened by jjmaldonis almost 8 years ago - 1 comment

#53 - Decouple parameters from `logging`

Issue - State: closed - Opened by jjmaldonis almost 8 years ago - 1 comment

#52 - Print warning when the user and StructOpt disagree on the number of cores to use

Issue - State: closed - Opened by jjmaldonis almost 8 years ago - 1 comment

#51 - Cluster rotate

Pull Request - State: closed - Opened by zhongnanxu almost 8 years ago

#50 - Input cleanup

Pull Request - State: closed - Opened by zhongnanxu almost 8 years ago

#49 - Adaptation

Pull Request - State: closed - Opened by zhongnanxu about 8 years ago

#48 - Parallelism

Pull Request - State: closed - Opened by jjmaldonis about 8 years ago

#47 - fix individual.copy to contain all the other relevant values

Issue - State: closed - Opened by jjmaldonis about 8 years ago

#46 - Have lammps.py always copy input files for keep_files = True

Issue - State: closed - Opened by zhongnanxu about 8 years ago - 2 comments

#45 - Logging

Pull Request - State: closed - Opened by jjmaldonis about 8 years ago

#44 - Figure out how population.replace and .allgather work -- can we reduce them?

Issue - State: closed - Opened by jjmaldonis about 8 years ago - 1 comment

#43 - move output relaxation files into logging directory?

Issue - State: closed - Opened by jjmaldonis about 8 years ago

#42 - see #37: wrote better logger initializers; ...

Pull Request - State: closed - Opened by jjmaldonis about 8 years ago

#41 - added genealogy tracking and printing;

Pull Request - State: closed - Opened by jjmaldonis about 8 years ago

#40 - initialized the fitness logger -- BE CAREFUL it needs to be deleted a…

Pull Request - State: closed - Opened by jjmaldonis about 8 years ago

#39 - Mutations

Pull Request - State: closed - Opened by zhongnanxu about 8 years ago

#38 - Moved sphere.py tools into structopt/tools

Pull Request - State: closed - Opened by zhongnanxu about 8 years ago

#36 - bugfixes for master and start of logging implementation

Pull Request - State: closed - Opened by jjmaldonis about 8 years ago

#35 - Generators

Pull Request - State: closed - Opened by zhongnanxu about 8 years ago

#34 - delete one of the .generation variables so there is only one

Issue - State: closed - Opened by jjmaldonis about 8 years ago

#33 - changed selection functions to not include a random probability of ac…

Pull Request - State: closed - Opened by jjmaldonis about 8 years ago

#32 - More robust lammps error checking

Pull Request - State: closed - Opened by zhongnanxu about 8 years ago

#31 - Parameters

Pull Request - State: closed - Opened by zhongnanxu about 8 years ago

#30 - TXF: Genealogy Tree Issue

Issue - State: closed - Opened by cmgtam about 8 years ago - 1 comment

#29 - TXF: StructOpt atoms too close for VASP

Issue - State: closed - Opened by cmgtam about 8 years ago - 1 comment

#28 - TXF: syntax error reported

Issue - State: closed - Opened by cmgtam about 8 years ago - 1 comment

#27 - TXF: occasionally structopt will fail on multiple cores on a single node

Issue - State: closed - Opened by cmgtam about 8 years ago - 3 comments

#26 - TXF: Running VASP with ASE

Issue - State: closed - Opened by cmgtam about 8 years ago - 1 comment

#25 - TXF: Submitting Mutations

Issue - State: closed - Opened by cmgtam about 8 years ago - 1 comment

#24 - TXF: 1 percent of lammps runs with bad energies

Issue - State: closed - Opened by cmgtam about 8 years ago

#23 - ENH: Add functionality for Defect structure type

Issue - State: closed - Opened by jjmaldonis over 8 years ago - 1 comment

#22 - ENH: add genealogy tracking

Issue - State: closed - Opened by jjmaldonis over 8 years ago

#19 - BUG: Running with LAMMPS keep_files=False causes hangup

Issue - State: closed - Opened by zhongnanxu over 8 years ago - 1 comment

#18 - ENH: Implement crossover schemes analogous to selection schemes

Issue - State: closed - Opened by jjmaldonis over 8 years ago - 1 comment

#16 - CRITICAL: Get the entire code to run in parallel with mpi4py

Issue - State: closed - Opened by jjmaldonis over 8 years ago - 1 comment

#15 - ENH: Add predators if necessary

Issue - State: closed - Opened by jjmaldonis over 8 years ago - 1 comment

#14 - ENH: Add fingerprinters if necessary

Issue - State: closed - Opened by jjmaldonis over 8 years ago - 1 comment

#13 - ENH: Only run crossover and mutate if generation > 1

Issue - State: closed - Opened by zhongnanxu over 8 years ago

#12 - CRITICAL: Add multi-core functionality for LAMMPS

Issue - State: closed - Opened by zhongnanxu over 8 years ago - 1 comment

#11 - ENH: Add generation functions

Issue - State: closed - Opened by zhongnanxu over 8 years ago - 2 comments

#10 - BUG: Add assertions of probabilities > 1.0

Issue - State: closed - Opened by zhongnanxu over 8 years ago

#9 - ENH: Update convergence criteria to maxgen

Issue - State: closed - Opened by zhongnanxu over 8 years ago - 2 comments

#8 - TEST: perform tests on lammps.py and structopt_lammps.py

Issue - State: open - Opened by zhongnanxu over 8 years ago

#7 - TEST: test hard-sphere cutoff relaxation method

Issue - State: open - Opened by jjmaldonis over 8 years ago - 2 comments

#4 - ENH: add `postprocessing` methods to each crossover/fitness/mutation/etc module

Issue - State: closed - Opened by jjmaldonis over 8 years ago - 1 comment

#3 - started adding pieces of the functionality

Pull Request - State: closed - Opened by jjmaldonis over 8 years ago

#2 - "working" version; everything runs but nothing actually does anything

Pull Request - State: closed - Opened by jjmaldonis over 8 years ago

#1 - bugfixes; still more to do before a real test can be run

Pull Request - State: closed - Opened by jjmaldonis over 8 years ago