Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / uw-cmg/StructOpt_modular issues and pull requests
#55 - move the logic of checking the V(k) file into one fuction
Issue -
State: closed - Opened by jjmaldonis almost 8 years ago
- 1 comment
#54 - Make the .fitness functions automatically take their individual
Issue -
State: open - Opened by jjmaldonis almost 8 years ago
#53 - Decouple parameters from `logging`
Issue -
State: closed - Opened by jjmaldonis almost 8 years ago
- 1 comment
#52 - Print warning when the user and StructOpt disagree on the number of cores to use
Issue -
State: closed - Opened by jjmaldonis almost 8 years ago
- 1 comment
#51 - Cluster rotate
Pull Request -
State: closed - Opened by zhongnanxu almost 8 years ago
#50 - Input cleanup
Pull Request -
State: closed - Opened by zhongnanxu almost 8 years ago
#49 - Adaptation
Pull Request -
State: closed - Opened by zhongnanxu about 8 years ago
#48 - Parallelism
Pull Request -
State: closed - Opened by jjmaldonis about 8 years ago
#47 - fix individual.copy to contain all the other relevant values
Issue -
State: closed - Opened by jjmaldonis about 8 years ago
#46 - Have lammps.py always copy input files for keep_files = True
Issue -
State: closed - Opened by zhongnanxu about 8 years ago
- 2 comments
#45 - Logging
Pull Request -
State: closed - Opened by jjmaldonis about 8 years ago
#44 - Figure out how population.replace and .allgather work -- can we reduce them?
Issue -
State: closed - Opened by jjmaldonis about 8 years ago
- 1 comment
#43 - move output relaxation files into logging directory?
Issue -
State: closed - Opened by jjmaldonis about 8 years ago
#42 - see #37: wrote better logger initializers; ...
Pull Request -
State: closed - Opened by jjmaldonis about 8 years ago
#41 - added genealogy tracking and printing;
Pull Request -
State: closed - Opened by jjmaldonis about 8 years ago
#40 - initialized the fitness logger -- BE CAREFUL it needs to be deleted a…
Pull Request -
State: closed - Opened by jjmaldonis about 8 years ago
#39 - Mutations
Pull Request -
State: closed - Opened by zhongnanxu about 8 years ago
#38 - Moved sphere.py tools into structopt/tools
Pull Request -
State: closed - Opened by zhongnanxu about 8 years ago
#37 - Implement logging throughout postprocessing methods when desired
Issue -
State: closed - Opened by jjmaldonis about 8 years ago
#36 - bugfixes for master and start of logging implementation
Pull Request -
State: closed - Opened by jjmaldonis about 8 years ago
#35 - Generators
Pull Request -
State: closed - Opened by zhongnanxu about 8 years ago
#34 - delete one of the .generation variables so there is only one
Issue -
State: closed - Opened by jjmaldonis about 8 years ago
#33 - changed selection functions to not include a random probability of ac…
Pull Request -
State: closed - Opened by jjmaldonis about 8 years ago
#32 - More robust lammps error checking
Pull Request -
State: closed - Opened by zhongnanxu about 8 years ago
#31 - Parameters
Pull Request -
State: closed - Opened by zhongnanxu about 8 years ago
#30 - TXF: Genealogy Tree Issue
Issue -
State: closed - Opened by cmgtam about 8 years ago
- 1 comment
#29 - TXF: StructOpt atoms too close for VASP
Issue -
State: closed - Opened by cmgtam about 8 years ago
- 1 comment
#28 - TXF: syntax error reported
Issue -
State: closed - Opened by cmgtam about 8 years ago
- 1 comment
#27 - TXF: occasionally structopt will fail on multiple cores on a single node
Issue -
State: closed - Opened by cmgtam about 8 years ago
- 3 comments
#26 - TXF: Running VASP with ASE
Issue -
State: closed - Opened by cmgtam about 8 years ago
- 1 comment
#25 - TXF: Submitting Mutations
Issue -
State: closed - Opened by cmgtam about 8 years ago
- 1 comment
#24 - TXF: 1 percent of lammps runs with bad energies
Issue -
State: closed - Opened by cmgtam about 8 years ago
#23 - ENH: Add functionality for Defect structure type
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
- 1 comment
#22 - ENH: add genealogy tracking
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
#21 - BUG: Add assertion statements throughout code to ensure things are working
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
#20 - ENH: allow the population to be sorted by implementing <, >, ==, etc for individuals based on their total fitness values
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
#19 - BUG: Running with LAMMPS keep_files=False causes hangup
Issue -
State: closed - Opened by zhongnanxu over 8 years ago
- 1 comment
#18 - ENH: Implement crossover schemes analogous to selection schemes
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
- 1 comment
#17 - BUG: Figure out how to consistently name files/classes/functions and match them up with input parameter names
Issue -
State: open - Opened by jjmaldonis over 8 years ago
#16 - CRITICAL: Get the entire code to run in parallel with mpi4py
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
- 1 comment
#15 - ENH: Add predators if necessary
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
- 1 comment
#14 - ENH: Add fingerprinters if necessary
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
- 1 comment
#13 - ENH: Only run crossover and mutate if generation > 1
Issue -
State: closed - Opened by zhongnanxu over 8 years ago
#12 - CRITICAL: Add multi-core functionality for LAMMPS
Issue -
State: closed - Opened by zhongnanxu over 8 years ago
- 1 comment
#11 - ENH: Add generation functions
Issue -
State: closed - Opened by zhongnanxu over 8 years ago
- 2 comments
#10 - BUG: Add assertions of probabilities > 1.0
Issue -
State: closed - Opened by zhongnanxu over 8 years ago
#9 - ENH: Update convergence criteria to maxgen
Issue -
State: closed - Opened by zhongnanxu over 8 years ago
- 2 comments
#8 - TEST: perform tests on lammps.py and structopt_lammps.py
Issue -
State: open - Opened by zhongnanxu over 8 years ago
#7 - TEST: test hard-sphere cutoff relaxation method
Issue -
State: open - Opened by jjmaldonis over 8 years ago
- 2 comments
#6 - ENH: add more selections, crossovers, mutations, and predators
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
#5 - ENH: Should we make classes/modules initializable from input parameters rather than from `structopt.parameters`?
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
- 1 comment
#4 - ENH: add `postprocessing` methods to each crossover/fitness/mutation/etc module
Issue -
State: closed - Opened by jjmaldonis over 8 years ago
- 1 comment
#3 - started adding pieces of the functionality
Pull Request -
State: closed - Opened by jjmaldonis over 8 years ago
#2 - "working" version; everything runs but nothing actually does anything
Pull Request -
State: closed - Opened by jjmaldonis over 8 years ago
#1 - bugfixes; still more to do before a real test can be run
Pull Request -
State: closed - Opened by jjmaldonis over 8 years ago