Ecosyste.ms: Issues

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GitHub / ursgal/ursgal issues and pull requests

#222 - Update dependency dash-html-components to v2 [SECURITY]

Pull Request - State: open - Opened by renovate[bot] 9 months ago

#221 - Update dependency dash-core-components to v2 [SECURITY]

Pull Request - State: open - Opened by renovate[bot] 9 months ago

#220 - Update dependency dash to v2 [SECURITY]

Pull Request - State: open - Opened by renovate[bot] 10 months ago

#219 - Update actions/setup-python action to v5

Pull Request - State: open - Opened by renovate[bot] 12 months ago

#218 - Update actions/checkout action to v4

Pull Request - State: open - Opened by renovate[bot] about 1 year ago

#217 - Update black.yml

Pull Request - State: closed - Opened by fu over 2 years ago

#216 - Add generate_target_decoy to random_seed

Pull Request - State: closed - Opened by StSchulze over 2 years ago

#215 - Update actions/setup-python action to v4 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] over 2 years ago

#214 - Update pyQms version

Pull Request - State: closed - Opened by MKoesters over 2 years ago

#213 - set distributable to false for log4j vulnerable java libs

Pull Request - State: closed - Opened by MKoesters over 2 years ago - 1 comment

#212 - Update actions/setup-python action to v3

Pull Request - State: closed - Opened by renovate[bot] over 2 years ago - 1 comment

#211 - Update actions/checkout action to v3

Pull Request - State: closed - Opened by renovate[bot] over 2 years ago - 1 comment

#210 - Allow setting of random_seed in generate_target_decoy_1_0_0

Pull Request - State: closed - Opened by MKoesters over 2 years ago

#209 - Update dependency dash-table to v5

Pull Request - State: closed - Opened by renovate[bot] almost 3 years ago - 1 comment

#208 - Update dependency dash-html-components to v2

Pull Request - State: closed - Opened by renovate[bot] almost 3 years ago - 1 comment

#207 - Update dependency dash-core-components to v2

Pull Request - State: closed - Opened by renovate[bot] almost 3 years ago - 1 comment

#206 - Update dependency dash to v2

Pull Request - State: closed - Opened by renovate[bot] about 3 years ago - 1 comment

#205 - Update dependency dash-table to v4.12.0

Pull Request - State: closed - Opened by renovate[bot] about 3 years ago - 1 comment

#204 - Update dependency dash-core-components to v1.17.1

Pull Request - State: closed - Opened by renovate[bot] about 3 years ago - 1 comment

#203 - Update dependency dash to v1.21.0

Pull Request - State: closed - Opened by renovate[bot] about 3 years ago - 1 comment

#202 - fix percolator PSM mapping

Pull Request - State: closed - Opened by StSchulze about 3 years ago

#201 - Update tox.ini

Pull Request - State: closed - Opened by MKoesters about 3 years ago

#200 - Update README.rst

Pull Request - State: closed - Opened by MKoesters about 3 years ago

#199 - Update pymzML version

Pull Request - State: closed - Opened by MKoesters about 3 years ago

#198 - Update tox_ci.yml

Pull Request - State: closed - Opened by MKoesters about 3 years ago

#197 - Update pymzml

Pull Request - State: closed - Opened by MKoesters about 3 years ago

#196 - Dependency Dashboard

Issue - State: open - Opened by renovate[bot] about 3 years ago

#195 - change requirements path in tox.ini

Pull Request - State: closed - Opened by MKoesters about 3 years ago

#194 - Bugfix map_mods for negative chemical compositions

Pull Request - State: closed - Opened by StSchulze about 3 years ago - 1 comment

#193 - add prefix in postflight

Pull Request - State: closed - Opened by MKoesters about 3 years ago

#192 - add github actions for CI, linting and CD

Pull Request - State: closed - Opened by MKoesters over 3 years ago

#191 - releax version restrictions for install_requires

Pull Request - State: closed - Opened by andy-d-palmer over 3 years ago - 2 comments

#190 - patch version of pymzml dependencies in install_requires

Issue - State: closed - Opened by andy-d-palmer over 3 years ago - 1 comment

#189 - Update dependency plotly to v5

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago - 1 comment

#188 - Update dependency pymzml to v2.5.0

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago

#187 - fix doc requirements

Pull Request - State: closed - Opened by StSchulze over 3 years ago - 1 comment

#186 - fix doc requirements

Pull Request - State: closed - Opened by StSchulze over 3 years ago - 1 comment

#185 - v0.6.9rc1

Pull Request - State: closed - Opened by fu over 3 years ago - 1 comment

#184 - Update changelog.txt

Pull Request - State: closed - Opened by StSchulze over 3 years ago

#183 - Update .travis.yml

Pull Request - State: closed - Opened by MKoesters over 3 years ago - 1 comment

#182 - Update requirements.txt

Pull Request - State: closed - Opened by MKoesters over 3 years ago

#181 - Update tag_graph_1_8_0.py

Pull Request - State: closed - Opened by MKoesters over 3 years ago - 1 comment

#180 - Update dependency importlib-metadata to v4

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago

#179 - Update dependency dash-core-components to v1.16.0

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago - 1 comment

#178 - Update dependency dash to v1.20.0

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago - 1 comment

#177 - Update dependency importlib-metadata to v3 - autoclosed

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago - 2 comments

#176 - Update open_modification_search_incl_combined_pep.py

Pull Request - State: closed - Opened by MKoesters over 3 years ago - 1 comment

#175 - Update dependency plotly to v4.14.3

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago - 1 comment

#174 - Update dependency dash-renderer to v1.9.0

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago - 1 comment

#173 - Update dependency dash-core-components to v1.15.0

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago - 1 comment

#172 - Update dependency dash to v1.19.0

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago - 1 comment

#171 - Pin dependency importlib-metadata to ==2.1.1

Pull Request - State: closed - Opened by renovate[bot] over 3 years ago - 1 comment

#170 - Allow multiple modifications at the same site

Pull Request - State: closed - Opened by MKoesters almost 4 years ago - 1 comment

#169 - Setup github action to check code formatting

Pull Request - State: closed - Opened by MKoesters almost 4 years ago - 2 comments

#168 - Update unify_csv_1_0_0.py

Pull Request - State: closed - Opened by MKoesters almost 4 years ago - 1 comment

#167 - Adding citations

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#166 - ERROR: coverage

Issue - State: closed - Opened by Deanho almost 4 years ago - 2 comments

#165 - Finalized SugarPy implementation

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#164 - Merge 0.6.8 back into dev

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#163 - Update to version 0.6.8

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#162 - Use `packaging.version.parser` for version parsing

Pull Request - State: closed - Opened by MKoesters almost 4 years ago - 1 comment

#161 - Fix/install resources

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#160 - Fix merge_csv, remove duplication in chemical_composition unimod_at_pos function

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#159 - adding importlib-metadata to doc requirements

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#158 - Merge pull request #157 from ursgal/dev

Pull Request - State: closed - Opened by fu almost 4 years ago - 1 comment

#157 - Updat to version 0.6.7

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#156 - updated docu and example scripts

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#155 - Fix/uparams dash app

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#154 - Integrate pyratez branch

Pull Request - State: closed - Opened by StSchulze almost 4 years ago - 1 comment

#153 - Implemented MSFragger 3.0, updated sanitize and cleaned up PTM-Shepherd

Pull Request - State: closed - Opened by StSchulze almost 4 years ago

#152 - pip does not install resources

Issue - State: closed - Opened by kevinkovalchik about 4 years ago - 4 comments
Labels: bug

#151 - core digest functionality - unify overlapping params

Issue - State: open - Opened by StSchulze about 4 years ago
Labels: enhancement

#150 - updated core gigest functionality

Pull Request - State: closed - Opened by tobymathieson about 4 years ago - 1 comment

#149 - Test travis CI with windows

Pull Request - State: closed - Opened by MKoesters about 4 years ago - 1 comment

#148 - - Added UNode for Comet search engine

Pull Request - State: closed - Opened by cguetot over 4 years ago - 6 comments

#147 - Comet 2019015

Pull Request - State: closed - Opened by cguetot over 4 years ago - 1 comment

#146 - fix install resources in setup.py

Pull Request - State: closed - Opened by MKoesters over 4 years ago - 1 comment

#145 - Update unimod_mapper.py

Pull Request - State: closed - Opened by tobymathieson over 4 years ago - 4 comments

#144 - Add new Unimod, adjusted test to include new entities and change Unim…

Pull Request - State: closed - Opened by fu over 4 years ago - 1 comment
Labels: enhancement

#143 - correction to msfragger precursor_mass_lower

Pull Request - State: closed - Opened by StSchulze over 4 years ago - 1 comment

#142 - Master merge back

Pull Request - State: closed - Opened by fu over 4 years ago

#141 - Version 0.6.6 - pip installable

Pull Request - State: closed - Opened by fu over 4 years ago - 1 comment

#140 - Update docs for installation with pip

Pull Request - State: closed - Opened by StSchulze over 4 years ago - 1 comment

#139 - Percolator 3.4.0

Pull Request - State: closed - Opened by MKoesters over 4 years ago - 1 comment

#138 - Correct setting of train_dir and knapsack_file parameter

Pull Request - State: closed - Opened by MKoesters over 4 years ago - 1 comment

#137 - Allow asymmetric window in msfragger search

Pull Request - State: closed - Opened by MKoesters over 4 years ago - 1 comment

#136 - Update combine_FDR_0_1.py

Pull Request - State: closed - Opened by MKoesters almost 5 years ago - 1 comment

#135 - Update renovate.json

Pull Request - State: closed - Opened by MKoesters about 5 years ago - 1 comment

#134 - Update deepnovo_0_0_1.py

Pull Request - State: closed - Opened by MKoesters about 5 years ago - 1 comment

#133 - modified combined_PEP

Pull Request - State: closed - Opened by StSchulze about 5 years ago - 1 comment

#132 - Hotfix/combined pep fix

Pull Request - State: closed - Opened by StSchulze about 5 years ago

#131 - Implemented MODa v1.62 and fixed #130

Pull Request - State: closed - Opened by StSchulze about 5 years ago - 1 comment

#130 - cpus does not work for moda_style_1

Issue - State: closed - Opened by cguetot about 5 years ago - 6 comments

#129 - Update README and shebangs

Pull Request - State: closed - Opened by MKoesters about 5 years ago - 3 comments

#128 - Remove Sphinx exceltable dependency from docu

Pull Request - State: closed - Opened by JB-MS about 5 years ago - 1 comment

#120 - Add custom exceptions

Issue - State: closed - Opened by MKoesters about 5 years ago - 11 comments
Labels: enhancement

#118 - feature/tmt quant_1_0_0

Pull Request - State: closed - Opened by MKoesters over 5 years ago - 1 comment
Labels: enhancement

#116 - Including elastase for msgfplus

Issue - State: closed - Opened by cguetot over 5 years ago - 2 comments
Labels: enhancement

#69 - Moved merge_duplicate_psms functionality

Pull Request - State: closed - Opened by StSchulze over 6 years ago

#30 - pyahocorasick with Windows and Python3.4+

Issue - State: closed - Opened by JB-MS over 7 years ago - 6 comments