Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / univiecube/deepnog issues and pull requests

#58 - Training for ResFinderFG v2.0 db

Issue - State: open - Opened by mtva0001 3 months ago

#57 - Bump torch from 1.13.1 to 2.2.0 in /requirements

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#56 - Bump torch from 1.7.1+cpu to 1.13.1 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#55 - Update training.py

Pull Request - State: closed - Opened by alepfu over 3 years ago - 6 comments
Labels: bug

#54 - Update example.rst

Pull Request - State: closed - Opened by alepfu over 3 years ago - 2 comments
Labels: documentation

#53 - CI Add Linux/MacOS Python3.9 builds

Pull Request - State: closed - Opened by VarIr over 3 years ago - 1 comment

#52 - FIX bioconda installs pytorch

Pull Request - State: closed - Opened by VarIr over 3 years ago - 1 comment

#51 - MNT prepare release 1.2.3

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#50 - Fix some warnings

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#49 - Remove training with iterable datasets?

Issue - State: open - Opened by VarIr almost 4 years ago - 1 comment

#48 - Fix dropout

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#47 - FIX Dropout in DeepNOG.forward()

Pull Request - State: closed - Opened by VarIr almost 4 years ago

#46 - CI Temporarily remove Python 3.9 from github actions

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 2 comments

#45 - TST iterable training

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#44 - DeepNOG implementation doesn't use dropout

Issue - State: closed - Opened by colligant almost 4 years ago - 5 comments
Labels: bug

#43 - Fix typo - wrong sequence of files used for training

Pull Request - State: closed - Opened by colligant almost 4 years ago - 13 comments

#42 - Updated license.

Pull Request - State: closed - Opened by saper0 almost 4 years ago - 2 comments

#42 - Updated license.

Pull Request - State: closed - Opened by saper0 almost 4 years ago - 2 comments

#41 - FIX Pandas 1.2.0 related test failure

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#41 - FIX Pandas 1.2.0 related test failure

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#40 - DOC update readme and docs (esp. new models)

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#40 - DOC update readme and docs (esp. new models)

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#39 - Update readme

Issue - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#39 - Update readme

Issue - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#38 - MNT enable CI for Python 3.9 on Linux and macOS

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#38 - MNT enable CI for Python 3.9 on Linux and macOS

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#37 - CI with Python 3.9

Issue - State: closed - Opened by VarIr almost 4 years ago

#37 - CI with Python 3.9

Issue - State: closed - Opened by VarIr almost 4 years ago

#36 - Remove Travis CI

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#36 - Remove Travis CI

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#35 - Enable codql analysis

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#35 - Enable codql analysis

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#34 - CI: Github Actions for Linux and MacOS builds

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#34 - CI: Github Actions for Linux and MacOS builds

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#33 - Switching to other CI providers?

Issue - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#33 - Switching to other CI providers?

Issue - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#32 - Remove 'deepencoding' architecture

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#32 - Remove 'deepencoding' architecture

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#31 - MNT CI builds for Python 3.9

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 2 comments

#31 - MNT CI builds for Python 3.9

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 2 comments

#30 - More models

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#30 - More models

Pull Request - State: closed - Opened by VarIr almost 4 years ago - 1 comment

#28 - Using COG20 data?

Issue - State: closed - Opened by mcbeaker almost 4 years ago - 10 comments

#28 - Using COG20 data?

Issue - State: closed - Opened by mcbeaker almost 4 years ago - 10 comments

#27 - BLD fix Travis MacOS Python versions

Pull Request - State: closed - Opened by VarIr about 4 years ago - 1 comment

#27 - BLD fix Travis MacOS Python versions

Pull Request - State: closed - Opened by VarIr about 4 years ago - 1 comment

#26 - Adding deepnog to bioconda

Pull Request - State: closed - Opened by VarIr about 4 years ago - 4 comments

#26 - Adding deepnog to bioconda

Pull Request - State: closed - Opened by VarIr about 4 years ago - 4 comments

#25 - Galaxy integration

Issue - State: open - Opened by bgruening about 4 years ago - 1 comment

#25 - Galaxy integration

Issue - State: open - Opened by bgruening about 4 years ago - 1 comment

#24 - Add bioconda recipe

Pull Request - State: closed - Opened by VarIr about 4 years ago - 1 comment

#24 - Add bioconda recipe

Pull Request - State: closed - Opened by VarIr about 4 years ago - 1 comment

#23 - Add bioconda recipe

Issue - State: closed - Opened by VarIr about 4 years ago - 1 comment

#23 - Add bioconda recipe

Issue - State: closed - Opened by VarIr about 4 years ago - 1 comment

#22 - Erroneous packaging in v1.2.0

Issue - State: closed - Opened by VarIr about 4 years ago

#21 - MNT Exit (not raising) on requesting unavailable device

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#21 - MNT Exit (not raising) on requesting unavailable device

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#20 - Progress bar

Issue - State: closed - Opened by VarIr over 4 years ago - 1 comment

#19 - Number of threads for CPU training

Issue - State: open - Opened by VarIr over 4 years ago - 4 comments

#18 - Error handling

Issue - State: closed - Opened by VarIr over 4 years ago

#18 - Error handling

Issue - State: closed - Opened by VarIr over 4 years ago

#17 - Model versioning

Issue - State: open - Opened by VarIr over 4 years ago - 1 comment

#17 - Model versioning

Issue - State: open - Opened by VarIr over 4 years ago - 1 comment

#16 - Training facilities

Pull Request - State: closed - Opened by VarIr over 4 years ago - 7 comments

#15 - BLD install PyTorch 1.5 nightly on Travis Linux

Pull Request - State: closed - Opened by VarIr over 4 years ago - 2 comments

#15 - BLD install PyTorch 1.5 nightly on Travis Linux

Pull Request - State: closed - Opened by VarIr over 4 years ago - 2 comments

#14 - DOC deepnog extension docs

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#13 - update docs

Pull Request - State: closed - Opened by LokiLuciferase over 4 years ago - 1 comment

#13 - update docs

Pull Request - State: closed - Opened by LokiLuciferase over 4 years ago - 1 comment

#12 - CLI changes

Pull Request - State: closed - Opened by LokiLuciferase over 4 years ago - 2 comments
Labels: enhancement

#12 - CLI changes

Pull Request - State: closed - Opened by LokiLuciferase over 4 years ago - 2 comments
Labels: enhancement

#11 - FIX Unrequired module imports (LGTM)

Pull Request - State: closed - Opened by VarIr over 4 years ago - 2 comments

#11 - FIX Unrequired module imports (LGTM)

Pull Request - State: closed - Opened by VarIr over 4 years ago - 2 comments

#10 - FIX use correct Python version on Travis

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#10 - FIX use correct Python version on Travis

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#9 - MNT move repo to univieCUBE

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#9 - MNT move repo to univieCUBE

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#8 - MNT public repo

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#8 - MNT public repo

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#7 - CLI set confidence threshold

Issue - State: closed - Opened by VarIr over 4 years ago - 5 comments
Labels: enhancement

#7 - CLI set confidence threshold

Issue - State: closed - Opened by VarIr over 4 years ago - 5 comments
Labels: enhancement

#6 - Travis Ubuntu builds fail

Issue - State: closed - Opened by VarIr over 4 years ago - 3 comments
Labels: bug

#6 - Travis Ubuntu builds fail

Issue - State: closed - Opened by VarIr over 4 years ago - 3 comments
Labels: bug

#5 - DOC sphinx docs scaffold

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#4 - MNT update readme

Pull Request - State: closed - Opened by VarIr almost 5 years ago - 1 comment

#4 - MNT update readme

Pull Request - State: closed - Opened by VarIr almost 5 years ago - 1 comment

#3 - FEAT fetch data from external storage

Pull Request - State: closed - Opened by VarIr almost 5 years ago - 1 comment

#3 - FEAT fetch data from external storage

Pull Request - State: closed - Opened by VarIr almost 5 years ago - 1 comment

#2 - BLD enable CI on Linux/MacOS/Win

Pull Request - State: closed - Opened by VarIr almost 5 years ago

#2 - BLD enable CI on Linux/MacOS/Win

Pull Request - State: closed - Opened by VarIr almost 5 years ago

#1 - deepnog 1.0.2

Pull Request - State: closed - Opened by VarIr almost 5 years ago

#1 - deepnog 1.0.2

Pull Request - State: closed - Opened by VarIr almost 5 years ago