Ecosyste.ms: Issues

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GitHub / univieCUBE/phenotrex issues and pull requests

#32 - Installation and Usage documentation

Pull Request - State: closed - Opened by LokiLuciferase about 3 years ago - 1 comment

#31 - Quality of Life Improvements and Minor Fixes

Pull Request - State: closed - Opened by LokiLuciferase about 3 years ago - 1 comment

#30 - BUGFIX: pin version of some packages which caused breakages, and bump version

Pull Request - State: closed - Opened by LokiLuciferase about 3 years ago - 1 comment

#29 - Omitted review comments from PR #27

Pull Request - State: closed - Opened by VarIr about 4 years ago - 4 comments

#28 - Allow feature selection at SHAP prediction step with TrexSVM

Pull Request - State: closed - Opened by LokiLuciferase about 4 years ago - 1 comment

#27 - Additional crossvalidation stats

Pull Request - State: closed - Opened by phyden about 4 years ago - 1 comment

#26 - FIX random split in CCCV

Pull Request - State: closed - Opened by VarIr about 4 years ago - 3 comments

#25 - [WIP] Fix builds and requirements

Pull Request - State: closed - Opened by VarIr about 4 years ago - 5 comments

#24 - Improve SHAP computation and output

Pull Request - State: closed - Opened by LokiLuciferase over 4 years ago - 2 comments

#23 - FIX Travis/Linux/AVX512 errors from PyTorch/MKLDNN

Pull Request - State: closed - Opened by VarIr over 4 years ago - 4 comments
Labels: bug

#22 - Revise Genotype file format

Pull Request - State: closed - Opened by LokiLuciferase over 4 years ago - 1 comment
Labels: enhancement

#21 - BUMP deepNOG to 1.1.0 (targeting PyPI) and update CI configurations

Pull Request - State: closed - Opened by LokiLuciferase over 4 years ago - 9 comments

#20 - Feature shap summary plot

Pull Request - State: closed - Opened by LokiLuciferase over 4 years ago - 3 comments
Labels: enhancement

#19 - FIX Use correct Python version on Travis

Pull Request - State: closed - Opened by VarIr over 4 years ago - 1 comment

#18 - Enable SHAP feature explanations (and make CLI more responsive)

Pull Request - State: closed - Opened by LokiLuciferase almost 5 years ago - 4 comments
Labels: enhancement

#17 - FIX travis for macos

Pull Request - State: closed - Opened by VarIr almost 5 years ago - 1 comment

#16 - Predictions directly from DNA and protein FASTA files

Pull Request - State: closed - Opened by LokiLuciferase almost 5 years ago - 9 comments
Labels: enhancement

#15 - MNT update travis ci config

Pull Request - State: closed - Opened by VarIr almost 5 years ago - 2 comments

#14 - MNT update badges

Pull Request - State: closed - Opened by VarIr almost 5 years ago - 1 comment

#13 - MAINT bump version to 0.3.0

Pull Request - State: closed - Opened by VarIr about 5 years ago

#12 - FIX setup warning

Pull Request - State: closed - Opened by VarIr about 5 years ago - 4 comments

#11 - Modular CLI

Pull Request - State: closed - Opened by LokiLuciferase about 5 years ago - 6 comments
Labels: enhancement

#10 - Merge dev into master

Pull Request - State: closed - Opened by LokiLuciferase about 5 years ago - 1 comment

#9 - Parameter search and general cleanup

Pull Request - State: closed - Opened by LokiLuciferase about 5 years ago - 1 comment

#8 - refactor ml for more flexibility, include extreme gradient boosting

Pull Request - State: closed - Opened by LokiLuciferase about 5 years ago - 3 comments
Labels: enhancement

#7 - FIX resolve module and subpackage name conflicts

Pull Request - State: closed - Opened by VarIr about 5 years ago - 1 comment

#6 - FIX ci tests

Pull Request - State: closed - Opened by VarIr about 5 years ago - 1 comment

#5 - Sphinx docs and readthedocs

Pull Request - State: closed - Opened by VarIr about 5 years ago - 2 comments

#4 - FIX resolve module and subpackage name conflicts

Pull Request - State: closed - Opened by VarIr about 5 years ago - 2 comments

#3 - WIP development tools

Pull Request - State: closed - Opened by VarIr about 5 years ago - 3 comments

#2 - simplify misclassification counter

Pull Request - State: closed - Opened by VarIr about 5 years ago - 1 comment

#1 - FIX parameter use_groups

Pull Request - State: closed - Opened by VarIr about 5 years ago