umccr/orcabus issues and pull requests

#567 - workflow manager: consider workflow specific configuration

Issue - State: open - Opened by reisingerf 5 months ago
Labels: pipeline

#566 - Feat (MM): Custom CSV Importer for MM

Pull Request - State: open - Opened by williamputraintan 5 months ago
Labels: feature, metadata_manager

#565 - fix(filemanager): swap docker hub images for AWS public ECR

Pull Request - State: closed - Opened by mmalenic 5 months ago
Labels: fix, filemanager

#564 - filemanager: avoid pulling images from docker hub

Issue - State: closed - Opened by mmalenic 5 months ago
Labels: bug, filemanager

#563 - filemanager: reconsider delete marker record deleted/created status

Issue - State: open - Opened by mmalenic 5 months ago
Labels: refactor, filemanager

#562 - Workflow Manager extension to "analysis"

Issue - State: open - Opened by reisingerf 5 months ago - 1 comment
Labels: feature, pipeline

#561 - Add FastqManager

Issue - State: open - Opened by reisingerf 5 months ago - 1 comment
Labels: epic, pipeline

#560 - Feat (MM): Custom CSV Importer for MM

Pull Request - State: closed - Opened by williamputraintan 5 months ago - 1 comment
Labels: feature, metadata_manager

#559 - Should tumor_normal output dir be tumor-normal?

Issue - State: open - Opened by alexiswl 5 months ago - 2 comments
Labels: change request, pipeline

#558 - add workflow run status count api

Pull Request - State: closed - Opened by raylrui 5 months ago
Labels: feature

#557 - Update Python service skel

Pull Request - State: closed - Opened by reisingerf 5 months ago

#556 - Fix cttso outputs sfn

Pull Request - State: closed - Opened by alexiswl 5 months ago
Labels: bug, fix

#555 - Initialise library set to prevent sfn failing

Pull Request - State: closed - Opened by alexiswl 5 months ago
Labels: bug, fix

#554 - Add slack notifier for failed step functions

Issue - State: open - Opened by alexiswl 5 months ago - 4 comments
Labels: feature

#553 - Set cttso v2 nf outputs

Pull Request - State: closed - Opened by alexiswl 5 months ago - 1 comment
Labels: bug, fix

#552 - Add lane to bclconvert samplesheet if it doesn't exist

Pull Request - State: closed - Opened by alexiswl 5 months ago - 1 comment
Labels: bug, fix

#551 - Payloads use Rgid not RgId

Pull Request - State: closed - Opened by alexiswl 5 months ago
Labels: bug, fix

#550 - TSO500L Data shouldn't have lane data

Pull Request - State: closed - Opened by alexiswl 5 months ago
Labels: fix

#549 - [skip ci]: Add prod example to cache bucket

Pull Request - State: closed - Opened by alexiswl 5 months ago
Labels: documentation

#548 - mod-podge fails because State GetItem uses fastqListRowRgId instead of fastqListRowRgid

Issue - State: closed - Opened by alexiswl 5 months ago
Labels: bug, pipeline

#547 - cttso get outputs sfn should override status of successful workflow if errors have occurred

Issue - State: closed - Opened by alexiswl 5 months ago
Labels: bug, pipeline

#546 - cttso glue fails when a cttso sample is placed over multiple lanes

Issue - State: closed - Opened by alexiswl 5 months ago
Labels: bug, pipeline

#545 - cttso glue fails when lane attribute is not found in the bclconvert settings

Issue - State: closed - Opened by alexiswl 5 months ago
Labels: bug, pipeline

#544 - wgts qc kwik-glue sfn fails when no wgts qc samples are on the run

Issue - State: closed - Opened by alexiswl 5 months ago - 2 comments
Labels: bug, pipeline

#543 - Fixed metadata sheet processing year input data type

Pull Request - State: closed - Opened by victorskl 5 months ago
Labels: fix

#542 - Fix (MM): Library synchronisation issue

Pull Request - State: closed - Opened by williamputraintan 5 months ago
Labels: fix

#541 - Metadata Manager Model Refactor

Issue - State: closed - Opened by alexiswl 5 months ago - 1 comment
Labels: feature, metadata_manager

#540 - Change(WorkflowRunManager): add more query and search terms

Pull Request - State: closed - Opened by raylrui 5 months ago - 4 comments
Labels: feature

#539 - Trimmed basespace upload manager dependencies

Pull Request - State: closed - Opened by victorskl 5 months ago - 1 comment
Labels: fix, dependencies

#538 - Bumped dependencies

Pull Request - State: closed - Opened by victorskl 5 months ago
Labels: dependencies

#537 - Enabled dynamodb PITR

Pull Request - State: closed - Opened by victorskl 5 months ago
Labels: platform, devops

#536 - Change(WorkflowRunManager): update the workflowrun model

Pull Request - State: closed - Opened by raylrui 5 months ago - 1 comment
Labels: feature, change request

#535 - Feat (metadata-manager): Update model

Pull Request - State: closed - Opened by williamputraintan 5 months ago - 1 comment
Labels: feature, metadata_manager

#534 - refactor(filemanager): compile database and migrations

Pull Request - State: closed - Opened by mmalenic 6 months ago - 1 comment
Labels: refactor, filemanager

#533 - Build ora compression service

Issue - State: open - Opened by alexiswl 6 months ago
Labels: feature, pipeline

#532 - build(deps): bump quinn-proto from 0.11.3 to 0.11.8 in /lib/workload/stateless/stacks/filemanager

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, rust

#531 - Feat: Update API Gateway Configuration

Pull Request - State: closed - Opened by williamputraintan 6 months ago - 1 comment
Labels: feature

#530 - filemanager: remove database requirement to compile code

Issue - State: closed - Opened by mmalenic 6 months ago
Labels: refactor, filemanager

#529 - filemanager: annotate portal run id

Pull Request - State: closed - Opened by mmalenic 6 months ago - 1 comment
Labels: feature, filemanager

#528 - Add microservice which updates filemanager records

Issue - State: closed - Opened by mmalenic 6 months ago
Labels: feature, filemanager

#527 - Bumped dependencies

Pull Request - State: closed - Opened by victorskl 6 months ago
Labels: dependencies

#526 - build(deps): bump micromatch from 4.0.5 to 4.0.8 in /lib/workload/stateful/stacks/postgres-manager

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, javascript

#525 - Feature/add umccrise rnasum and glues

Pull Request - State: closed - Opened by alexiswl 6 months ago - 3 comments
Labels: feature

#524 - WFM - Extend API capabilities - ongoing workflowrun filter

Pull Request - State: closed - Opened by reisingerf 6 months ago
Labels: feature

#523 - Fix: Metadata Filter && Sortable Endpoint

Pull Request - State: closed - Opened by williamputraintan 6 months ago
Labels: fix

#522 - Fix issue with WRSC generation when a libary record exists

Pull Request - State: closed - Opened by reisingerf 6 months ago - 1 comment
Labels: fix

#521 - Fix/workflowrun state handling

Pull Request - State: closed - Opened by reisingerf 6 months ago - 4 comments
Labels: fix, refactor

#520 - Fix Django OpenAPI Schema

Pull Request - State: closed - Opened by williamputraintan 6 months ago - 1 comment
Labels: fix

#519 - fix: filemanager migration

Pull Request - State: closed - Opened by mmalenic 6 months ago
Labels: fix, filemanager

#518 - Lambda in sfn fails on 'coldstart'

Issue - State: open - Opened by alexiswl 6 months ago

#517 - build(deps): bump micromatch from 4.0.7 to 4.0.8

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, javascript

#516 - Fixed WorkflowRun State creation business logic

Pull Request - State: closed - Opened by victorskl 6 months ago - 1 comment
Labels: fix

#515 - filemanager: attributes route and misc CORS changes

Pull Request - State: closed - Opened by mmalenic 6 months ago - 5 comments
Labels: feature, filemanager

#514 - refactor: filemanager indexes

Pull Request - State: closed - Opened by mmalenic 6 months ago
Labels: refactor, filemanager

#513 - Feature/workflow library link

Pull Request - State: closed - Opened by reisingerf 6 months ago
Labels: feature

#512 - Split stacky stack into primary / secondary and tertiary units

Issue - State: open - Opened by alexiswl 6 months ago
Labels: refactor, pipeline

#511 - Provide run summaries for each 'stacky' service - post O2

Issue - State: open - Opened by alexiswl 6 months ago - 1 comment
Labels: feature, pipeline

#510 - Fixed metadata endpoint allow dot sep in PK

Pull Request - State: closed - Opened by victorskl 6 months ago
Labels: fix

#509 - Updated stacky with new metadata manager

Pull Request - State: closed - Opened by alexiswl 6 months ago - 1 comment
Labels: change request, refactor

#508 - metadata-manager: model refactoring

Pull Request - State: closed - Opened by williamputraintan 6 months ago - 2 comments
Labels: change request

#507 - Fix/filemanager api tidy

Pull Request - State: closed - Opened by mmalenic 6 months ago - 2 comments
Labels: fix, filemanager

#506 - initialised umccrise pipeline manager

Pull Request - State: closed - Opened by alexiswl 6 months ago - 1 comment
Labels: feature

#505 - Stacky updates for generating umccrise events

Pull Request - State: closed - Opened by alexiswl 6 months ago
Labels: feature

#504 - Use the new metadata library endpoint for queries

Pull Request - State: closed - Opened by alexiswl 6 months ago - 1 comment
Labels: change request

#503 - Add support for linked libraries to WRSC event schema

Pull Request - State: closed - Opened by reisingerf 6 months ago - 4 comments
Labels: documentation, feature

#502 - Django pagination fix

Pull Request - State: closed - Opened by reisingerf 6 months ago
Labels: fix

#501 - Removed dependabot.yml config and revert to its default setting

Pull Request - State: closed - Opened by victorskl 6 months ago - 1 comment
Labels: devops, dependencies

#500 - Add rule event pattern for analyses so that only analyses with specific engineParameters trigger downstream workflows

Issue - State: open - Opened by alexiswl 6 months ago
Labels: pipeline

#499 - fix(filemanager): presigned URL access

Pull Request - State: closed - Opened by mmalenic 6 months ago
Labels: fix, filemanager

#498 - [draft]: bump esbuild from 0.23.0 to 0.23.1 in /lib/workload/stateful/stacks/postgres-manager

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#497 - [draft]: bump @types/node from 22.3.0 to 22.4.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#496 - [draft]: bump cdk-nag from 2.28.181 to 2.28.183

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#495 - filemanager: add way to shorten attribute API querying

Issue - State: closed - Opened by mmalenic 6 months ago - 2 comments
Labels: feature, filemanager

#494 - [draft]: bump @aws-sdk/client-secrets-manager from 3.629.0 to 3.632.0 in /lib/workload/stateful/stacks/postgres-manager

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 4 comments
Labels: dependencies

GitHub / umccr/orcabus issues and pull requests