ukhsa-collaboration/snapperdb issues and pull requests

#27 - Conda installation fails

Issue - State: open - Opened by Antonia-Chalka almost 2 years ago

#26 - Python 3 support

Issue - State: open - Opened by jb2cool about 4 years ago

#25 - Can't populating database with VCF

Issue - State: open - Opened by phongphak over 5 years ago - 1 comment

#24 - -x calculation to include ignored positions

Issue - State: open - Opened by gingerdave269 over 5 years ago

#23 - Trying to run fastq to db.

Issue - State: open - Opened by DolapoA about 6 years ago - 3 comments

#22 - Reproducing "Tutorial for setting up SnapperDB Instance" : Not getting the sames SNP Address

Issue - State: closed - Opened by ScaonE about 6 years ago - 1 comment

#21 - make_snpbd : invalid GATK command

Issue - State: closed - Opened by ScaonE about 6 years ago - 2 comments

#20 - get_the_snps -n and -ng

Issue - State: closed - Opened by jmattock over 6 years ago - 1 comment

#19 - a flag to allow to overwrite duplicate entries into the database

Issue - State: open - Opened by Wang-Jing-NZ over 6 years ago - 1 comment

#18 - install from pip not working?

Issue - State: closed - Opened by flashton2003 over 6 years ago - 2 comments

#17 - install from conda not working

Issue - State: closed - Opened by flashton2003 over 6 years ago - 1 comment

#16 - Possible to work with MySQL?

Issue - State: closed - Opened by Wang-Jing-NZ over 6 years ago - 1 comment

#15 - rec_file option

Issue - State: closed - Opened by ConstantinV almost 7 years ago - 2 comments

#14 - FixSQL template install for pip

Pull Request - State: closed - Opened by m-bull almost 7 years ago

#13 - Versions of additionals tools

Issue - State: closed - Opened by ConstantinV almost 7 years ago - 2 comments

#12 - Feature request: Querying SNP addresses

Issue - State: open - Opened by mgenphl almost 7 years ago - 3 comments

#11 - warning msg on calculating AD ratio issue

Issue - State: closed - Opened by Wang-Jing-NZ almost 7 years ago - 1 comment

#10 - Propose a fix to the bug leading to PICARDPATH env variable being ignored

Pull Request - State: closed - Opened by andersgs about 7 years ago - 2 comments

#9 - Make a release

Issue - State: closed - Opened by andersgs about 7 years ago - 1 comment

#8 - Which snapperdb.py should i be calling?

Issue - State: closed - Opened by jb2cool about 7 years ago - 4 comments

#7 - Any advice on PostgreSQL setup, everything i try seems to give me Ident authentication failed

Issue - State: closed - Opened by jb2cool about 7 years ago - 10 comments

#6 - Strains not added to the database

Issue - State: closed - Opened by BertBog about 7 years ago - 4 comments

#5 - Who is timdallman and why is his username hard-coded into the install? (Problems creating DB)

Issue - State: closed - Opened by jb2cool over 7 years ago - 3 comments

#4 - Add number of mixed positions cutoff

Issue - State: closed - Opened by timdallman almost 8 years ago - 1 comment

#3 - Add support for JSON import / export