ukhsa-collaboration/snapperdb issues and pull requests

#27 - Conda installation fails

Issue - State: open - Opened by Antonia-Chalka about 1 year ago

#26 - Python 3 support

Issue - State: open - Opened by jb2cool over 3 years ago

#25 - Can't populating database with VCF

Issue - State: open - Opened by phongphak over 4 years ago - 1 comment

#24 - -x calculation to include ignored positions

Issue - State: open - Opened by gingerdave269 almost 5 years ago

#23 - Trying to run fastq to db.

Issue - State: open - Opened by DolapoA over 5 years ago - 3 comments

#22 - Reproducing "Tutorial for setting up SnapperDB Instance" : Not getting the sames SNP Address

Issue - State: closed - Opened by ScaonE over 5 years ago - 1 comment

#21 - make_snpbd : invalid GATK command

Issue - State: closed - Opened by ScaonE over 5 years ago - 2 comments

#20 - get_the_snps -n and -ng

Issue - State: closed - Opened by jmattock over 5 years ago - 1 comment

#19 - a flag to allow to overwrite duplicate entries into the database

Issue - State: open - Opened by Wang-Jing-NZ over 5 years ago - 1 comment

#18 - install from pip not working?

Issue - State: closed - Opened by flashton2003 almost 6 years ago - 2 comments

#17 - install from conda not working

Issue - State: closed - Opened by flashton2003 almost 6 years ago - 1 comment

#16 - Possible to work with MySQL?

Issue - State: closed - Opened by Wang-Jing-NZ almost 6 years ago - 1 comment

#15 - rec_file option

Issue - State: closed - Opened by ConstantinV about 6 years ago - 2 comments

#14 - FixSQL template install for pip

Pull Request - State: closed - Opened by m-bull about 6 years ago

#13 - Versions of additionals tools

Issue - State: closed - Opened by ConstantinV about 6 years ago - 2 comments

#12 - Feature request: Querying SNP addresses

Issue - State: open - Opened by mgenphl about 6 years ago - 3 comments

#11 - warning msg on calculating AD ratio issue

Issue - State: closed - Opened by Wang-Jing-NZ about 6 years ago - 1 comment

#10 - Propose a fix to the bug leading to PICARDPATH env variable being ignored

Pull Request - State: closed - Opened by andersgs over 6 years ago - 2 comments

#9 - Make a release

Issue - State: closed - Opened by andersgs over 6 years ago - 1 comment

#8 - Which snapperdb.py should i be calling?

Issue - State: closed - Opened by jb2cool over 6 years ago - 4 comments

#7 - Any advice on PostgreSQL setup, everything i try seems to give me Ident authentication failed

Issue - State: closed - Opened by jb2cool over 6 years ago - 10 comments

#6 - Strains not added to the database

Issue - State: closed - Opened by BertBog over 6 years ago - 4 comments

#5 - Who is timdallman and why is his username hard-coded into the install? (Problems creating DB)

Issue - State: closed - Opened by jb2cool over 6 years ago - 3 comments

#4 - Add number of mixed positions cutoff

Issue - State: closed - Opened by timdallman about 7 years ago - 1 comment

#3 - Add support for JSON import / export