uio-bmi/immuneML issues and pull requests

#178 - Bugfix: being able to read in previously exported element datasets

Pull Request - State: closed - Opened by LonnekeScheffer 18 days ago

#177 - Major data model refactor

Pull Request - State: closed - Opened by pavlovicmilena 20 days ago

#176 - Bugfixes & minor feature

Pull Request - State: closed - Opened by LonnekeScheffer about 2 months ago

#175 - test nar PR

Pull Request - State: closed - Opened by LonnekeScheffer 6 months ago

#174 - bugfix: element dataset paths

Pull Request - State: closed - Opened by LonnekeScheffer 6 months ago - 1 comment

#173 - Bug fixes

Pull Request - State: closed - Opened by LonnekeScheffer 7 months ago

#172 - Error while running the quickstart analysis

Issue - State: closed - Opened by kvegesan-stjude 7 months ago - 8 comments

#171 - Documentation updates and bugfixes

Pull Request - State: closed - Opened by LonnekeScheffer 7 months ago - 1 comment

#170 - ImmuneML: parsing the specification...

Issue - State: closed - Opened by Genokarma 11 months ago - 9 comments

#169 - ImmuneML galaxy-error in training model

Issue - State: closed - Opened by Genokarma 11 months ago - 1 comment

#168 - More example of yaml please

Issue - State: closed - Opened by FsheriF 11 months ago - 3 comments

#167 - Galaxy interface trims CDR3 residues in create dataset

Issue - State: closed - Opened by agirgis3 12 months ago - 3 comments

#166 - Kl report

Pull Request - State: closed - Opened by knutdrand about 1 year ago

#165 - Remove binary H5 file from Sonnia

Pull Request - State: closed - Opened by mmamica about 1 year ago

#164 - Mmamica/nar remove binaries exported models

Pull Request - State: closed - Opened by mmamica about 1 year ago

#163 - Add generative models - first iteration

Pull Request - State: closed - Opened by pavlovicmilena about 1 year ago

#162 - Add pipeline for applying generative models

Pull Request - State: closed - Opened by mmamica about 1 year ago

#161 - Merge in short motif code

Pull Request - State: closed - Opened by LonnekeScheffer about 1 year ago

#160 - Bug fixes

Pull Request - State: closed - Opened by pavlovicmilena about 1 year ago

#159 - IMGT positions are computed wrong

Issue - State: closed - Opened by LonnekeScheffer over 1 year ago - 1 comment

#158 - ImmuneML requires scikit-learn==1.2.2 to work, the default pip install uses scikit-learn==1.3.0

Issue - State: closed - Opened by CokieLee over 1 year ago - 2 comments

#157 - Attempt at fixing compatibility with Python 3.10

Pull Request - State: closed - Opened by alxcost over 1 year ago - 3 comments

#156 - William PDB support

Pull Request - State: closed - Opened by LonnekeScheffer over 1 year ago

#155 - Bug fixes and minor feature updates

Pull Request - State: closed - Opened by pavlovicmilena over 1 year ago

#154 - Revert 8 dev

Pull Request - State: closed - Opened by jskimmeland over 1 year ago - 1 comment

#153 - Bugfixes

Pull Request - State: closed - Opened by LonnekeScheffer over 1 year ago

#152 - Generative models w unsupervised learning

Pull Request - State: closed - Opened by theomannen almost 2 years ago

#151 - Bugfixes

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago - 1 comment

#150 - Clustering Code Review PR

Pull Request - State: closed - Opened by IsakMV almost 2 years ago

#149 - Mathias DImensioanlity Reduction PR

Pull Request - State: closed - Opened by MathiBK almost 2 years ago

#148 - Genmodels Pull Request

Pull Request - State: closed - Opened by theomannen almost 2 years ago

#147 - William PR for review

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#146 - William PR for review

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago - 1 comment

#145 - bugfix make_binary_class_mapping

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#144 - improved error message for Metric

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago - 2 comments

#143 - Olav PR for review

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#142 - Pdb support - PR for code review

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#141 - Caching speed improvement MatchedSequences/MatchedReceptors

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#140 - Bugfix: consider positive_class when making binary mapping

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#139 - Speed up CompAIRRSequenceAbundance encoder

Pull Request - State: closed - Opened by pavlovicmilena about 2 years ago

#138 - Bugfix element generator make subset

Pull Request - State: closed - Opened by LonnekeScheffer about 2 years ago

#137 - Cleaned up print/logging

Pull Request - State: closed - Opened by LonnekeScheffer about 2 years ago - 1 comment

#136 - Implement motif continuity plots

Pull Request - State: closed - Opened by LonnekeScheffer about 2 years ago

#135 - small docs updates for importers

Pull Request - State: closed - Opened by LonnekeScheffer about 2 years ago

#134 - Make CompAIRR encoder more RAM efficient

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#133 - simplified tutorial documentation, show link on main page

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#132 - Added data files and documentation related to AIRR-C tutorial

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#131 - Minor updates

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#130 - please add a version parameter

Issue - State: closed - Opened by schristley over 2 years ago

#129 - Docs new Galaxy instance

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#128 - user friendly error message

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#127 - bugfix: Compairr seq abundance memory

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago - 2 comments

#126 - Kmer abundance encoder

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#125 - 2 fixes for bugs that only showed up on Windows

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#124 - Minor fixes

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago - 1 comment

#123 - small fix in import

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#122 - Fix junction export

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#121 - added reference encoders as option for sklearn methods

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#120 - small fix in docs

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#119 - Matches sum option

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago - 2 comments

#118 - Reports MLMethods updates

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#117 - Parallel reports

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago - 1 comment