Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / uio-bmi/immuneML issues and pull requests

#175 - test nar PR

Pull Request - State: closed - Opened by LonnekeScheffer 4 months ago

#174 - bugfix: element dataset paths

Pull Request - State: open - Opened by LonnekeScheffer 4 months ago

#173 - Bug fixes

Pull Request - State: closed - Opened by LonnekeScheffer 5 months ago

#172 - Error while running the quickstart analysis

Issue - State: closed - Opened by kvegesan-stjude 5 months ago - 8 comments

#171 - Documentation updates and bugfixes

Pull Request - State: closed - Opened by LonnekeScheffer 5 months ago - 1 comment

#170 - ImmuneML: parsing the specification...

Issue - State: closed - Opened by Genokarma 9 months ago - 9 comments

#169 - ImmuneML galaxy-error in training model

Issue - State: closed - Opened by Genokarma 9 months ago - 1 comment

#168 - More example of yaml please

Issue - State: closed - Opened by FsheriF 9 months ago - 3 comments

#167 - Galaxy interface trims CDR3 residues in create dataset

Issue - State: closed - Opened by agirgis3 10 months ago - 3 comments

#166 - Kl report

Pull Request - State: closed - Opened by knutdrand 10 months ago

#165 - Remove binary H5 file from Sonnia

Pull Request - State: closed - Opened by mmamica 11 months ago

#164 - Mmamica/nar remove binaries exported models

Pull Request - State: closed - Opened by mmamica 11 months ago

#163 - Add generative models - first iteration

Pull Request - State: closed - Opened by pavlovicmilena 11 months ago

#162 - Add pipeline for applying generative models

Pull Request - State: closed - Opened by mmamica 11 months ago

#161 - Merge in short motif code

Pull Request - State: closed - Opened by LonnekeScheffer 11 months ago

#160 - Bug fixes

Pull Request - State: closed - Opened by pavlovicmilena 12 months ago

#159 - IMGT positions are computed wrong

Issue - State: closed - Opened by LonnekeScheffer about 1 year ago - 1 comment

#157 - Attempt at fixing compatibility with Python 3.10

Pull Request - State: closed - Opened by alxcost about 1 year ago - 3 comments

#156 - William PDB support

Pull Request - State: closed - Opened by LonnekeScheffer over 1 year ago

#155 - Bug fixes and minor feature updates

Pull Request - State: closed - Opened by pavlovicmilena over 1 year ago

#154 - Revert 8 dev

Pull Request - State: closed - Opened by jskimmeland over 1 year ago - 1 comment

#153 - Bugfixes

Pull Request - State: closed - Opened by LonnekeScheffer over 1 year ago

#152 - Generative models w unsupervised learning

Pull Request - State: closed - Opened by theomannen over 1 year ago

#151 - Bugfixes

Pull Request - State: closed - Opened by LonnekeScheffer over 1 year ago - 1 comment

#150 - Clustering Code Review PR

Pull Request - State: closed - Opened by IsakMV over 1 year ago

#149 - Mathias DImensioanlity Reduction PR

Pull Request - State: closed - Opened by MathiBK over 1 year ago

#148 - Genmodels Pull Request

Pull Request - State: closed - Opened by theomannen over 1 year ago

#147 - William PR for review

Pull Request - State: closed - Opened by LonnekeScheffer over 1 year ago

#146 - William PR for review

Pull Request - State: closed - Opened by LonnekeScheffer over 1 year ago - 1 comment

#145 - bugfix make_binary_class_mapping

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#144 - improved error message for Metric

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago - 2 comments

#143 - Olav PR for review

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#142 - Pdb support - PR for code review

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#141 - Caching speed improvement MatchedSequences/MatchedReceptors

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#140 - Bugfix: consider positive_class when making binary mapping

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#139 - Speed up CompAIRRSequenceAbundance encoder

Pull Request - State: closed - Opened by pavlovicmilena almost 2 years ago

#138 - Bugfix element generator make subset

Pull Request - State: closed - Opened by LonnekeScheffer almost 2 years ago

#137 - Cleaned up print/logging

Pull Request - State: closed - Opened by LonnekeScheffer about 2 years ago - 1 comment

#136 - Implement motif continuity plots

Pull Request - State: closed - Opened by LonnekeScheffer about 2 years ago

#135 - small docs updates for importers

Pull Request - State: closed - Opened by LonnekeScheffer about 2 years ago

#134 - Make CompAIRR encoder more RAM efficient

Pull Request - State: closed - Opened by LonnekeScheffer about 2 years ago

#133 - simplified tutorial documentation, show link on main page

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#132 - Added data files and documentation related to AIRR-C tutorial

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#131 - Minor updates

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#130 - please add a version parameter

Issue - State: closed - Opened by schristley over 2 years ago

#129 - Docs new Galaxy instance

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#128 - user friendly error message

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#127 - bugfix: Compairr seq abundance memory

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago - 2 comments

#126 - Kmer abundance encoder

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#125 - 2 fixes for bugs that only showed up on Windows

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#124 - Minor fixes

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago - 1 comment

#123 - small fix in import

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#122 - Fix junction export

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#121 - added reference encoders as option for sklearn methods

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#120 - small fix in docs

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#119 - Matches sum option

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago - 2 comments

#118 - Reports MLMethods updates

Pull Request - State: closed - Opened by LonnekeScheffer over 2 years ago

#117 - Parallel reports

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago - 1 comment

#116 - added log_scale option to FeatureComparison report

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#115 - update: make standard dataset name in GalaxyTools 'dataset'

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#114 - Fix docker dependencies with pystache and fisher packages

Pull Request - State: closed - Opened by pavlovicmilena almost 3 years ago

#113 - docs temporary workaround with old version of setuptools

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#112 - fixed issue: ModuleNotFoundError: No module named Cython

Pull Request - State: closed - Opened by alexwang2013 almost 3 years ago

#111 - Minor bugfixes

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#110 - bugfix: color and facet labels did not work

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#109 - keep_fraction option for FeatureComparison

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#108 - CompAIRR integration

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago - 1 comment

#107 - Morisita horn distance metric + small bugfixes

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#106 - check encoder-ML method compatibility upon YAML parsing

Pull Request - State: closed - Opened by LonnekeScheffer almost 3 years ago

#104 - Update README.md

Pull Request - State: closed - Opened by LonnekeScheffer about 3 years ago

#102 - perhaps not fail when not supplying sequence position weights in full sequence implantation

Issue - State: closed - Opened by KanduriC about 3 years ago
Labels: enhancement

#101 - Add check to ML parser for positive class setting

Issue - State: closed - Opened by pavlovicmilena about 3 years ago
Labels: enhancement

#100 - ValueError: RegionType NaN

Issue - State: closed - Opened by KanduriC about 3 years ago - 1 comment
Labels: bug

#99 - CompAIRR integration

Pull Request - State: closed - Opened by LonnekeScheffer about 3 years ago - 1 comment

#98 - Bugfixes for Galaxy tools

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago

#97 - Safety improvements

Pull Request - State: closed - Opened by pavlovicmilena over 3 years ago

#96 - Add preprocessing option to DatasetExportInstruction

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago

#94 - Bugfixes in DistanceEncoder

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago

#92 - Update README.md

Pull Request - State: closed - Opened by pavlovicmilena over 3 years ago

#91 - Preprocessing tutorial + SimpleDatasetOverview report + bugfixes

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago - 2 comments

#90 - error when exporting evenness encoded data as design matrix

Issue - State: closed - Opened by KanduriC over 3 years ago - 1 comment

#89 - Feature comparison report

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago - 1 comment

#88 - Motif recovery tutorial

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago

#87 - import updates

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago

#86 - One hot encoding with nucleotide sequences

Pull Request - State: closed - Opened by pavlovicmilena over 3 years ago

#85 - Deeprc quickfix

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago - 1 comment

#84 - Docs updates

Pull Request - State: closed - Opened by pavlovicmilena over 3 years ago

#83 - Updated readme and small docs updates

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago

#82 - Docs updates

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago

#81 - Documentation updates (user feedback)

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago - 1 comment

#80 - column_mapping_synonyms

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago

#79 - ImmunoSEQ import fixes

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago - 1 comment

#78 - Minor updates

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago

#77 - Small updates

Pull Request - State: closed - Opened by LonnekeScheffer over 3 years ago

#76 - likely_confounders

Pull Request - State: closed - Opened by ghadialhajj over 3 years ago - 4 comments