Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ugentbiomath/covid19-model issues and pull requests

#99 - Clarify figure of model dynamics

Issue - State: closed - Opened by JennaVergeynst over 4 years ago - 3 comments

#98 - Callibration notebook

Pull Request - State: closed - Opened by JennaVergeynst over 4 years ago

#97 - Update README.md

Pull Request - State: closed - Opened by Beramos over 4 years ago

#96 - added data AZ Maria Middelares

Pull Request - State: closed - Opened by twallema over 4 years ago

#94 - Overview layout

Pull Request - State: closed - Opened by JennaVergeynst over 4 years ago

#93 - update repo structure

Pull Request - State: closed - Opened by JennaVergeynst over 4 years ago - 1 comment

#92 - Optimization

Pull Request - State: open - Opened by stijnvanhoey over 4 years ago - 1 comment

#91 - function `get_COVID19_SEIRD_parameters` not working due to missing file

Issue - State: closed - Opened by stijnvanhoey over 4 years ago - 3 comments

#90 - Update dataload

Pull Request - State: closed - Opened by stijnvanhoey over 4 years ago - 2 comments

#89 - Proposal to have output of the data loading functions as pandas DataFrame

Issue - State: closed - Opened by stijnvanhoey over 4 years ago - 4 comments

#88 - Test refactoring

Pull Request - State: closed - Opened by JennaVergeynst over 4 years ago

#87 - Added optimization to refactor

Pull Request - State: closed - Opened by twallema over 4 years ago

#85 - Added compliance to non-refactored SEIRSAgeModel

Pull Request - State: closed - Opened by twallema over 4 years ago

#84 - Remove midcare state

Pull Request - State: closed - Opened by JennaVergeynst over 4 years ago - 1 comment

#83 - Added sciensano dataset to gitignore

Pull Request - State: closed - Opened by twallema over 4 years ago

#82 - Functions to load interaction matrices and parameters from datafiles

Pull Request - State: closed - Opened by twallema over 4 years ago

#81 - Several tweaks to make fitting to data easier

Pull Request - State: closed - Opened by twallema over 4 years ago

#80 - Fixed bug in `plotFit` function

Pull Request - State: closed - Opened by twallema over 4 years ago

#79 - New names for package and models

Issue - State: open - Opened by twallema over 4 years ago
Labels: enhancement

#78 - Quick fix docs

Pull Request - State: closed - Opened by Beramos over 4 years ago
Labels: documentation

#77 - Update docs: what to do when adding python packages

Pull Request - State: closed - Opened by Beramos over 4 years ago
Labels: documentation

#76 - sphinx build location depends on used command

Issue - State: closed - Opened by stijnvanhoey over 4 years ago - 3 comments
Labels: documentation

#75 - **Start to collaborate: documentation website**

Issue - State: closed - Opened by Beramos over 4 years ago

#74 - Docs, start to collaborate: repository layout

Issue - State: closed - Opened by Beramos over 4 years ago - 2 comments
Labels: documentation

#73 - **Docs: Background**

Issue - State: closed - Opened by Beramos over 4 years ago - 3 comments
Labels: documentation

#72 - **Documentation: How to use the model**

Issue - State: closed - Opened by Beramos over 4 years ago - 2 comments
Labels: documentation

#71 - **Docs, Start to collaborate: python package**

Issue - State: closed - Opened by Beramos over 4 years ago
Labels: documentation, collaboration

#70 - Add info on local sphinx build

Pull Request - State: closed - Opened by stijnvanhoey over 4 years ago - 7 comments
Labels: documentation

#69 - Building sphinx docs, local

Issue - State: closed - Opened by Beramos over 4 years ago - 1 comment
Labels: help wanted, question

#68 - Fix binder badge

Pull Request - State: closed - Opened by Beramos over 4 years ago

#67 - hotfix postBuild (2): correct pip install command

Pull Request - State: closed - Opened by Beramos over 4 years ago - 1 comment

#66 - hotfix postBuild: remove develop tag

Pull Request - State: closed - Opened by Beramos over 4 years ago
Labels: bug

#65 - add postBuild script: compiling COVIDMODEL

Pull Request - State: closed - Opened by Beramos over 4 years ago
Labels: bug

#64 - Duplicate notebook SEIRSNetworkModel_demo

Issue - State: closed - Opened by Beramos over 4 years ago - 3 comments
Labels: enhancement

#63 - Removed midcare state in model.

Pull Request - State: closed - Opened by twallema over 4 years ago - 2 comments

#62 - Feat doc update

Pull Request - State: closed - Opened by Beramos over 4 years ago
Labels: documentation

#61 - unclear purpose of the "templates" folder in notebooks folder

Issue - State: closed - Opened by Beramos over 4 years ago - 4 comments
Labels: question

#60 - disable binder workflow

Pull Request - State: closed - Opened by Beramos over 4 years ago

#59 - Package/model not available in binder

Issue - State: closed - Opened by Beramos over 4 years ago - 3 comments
Labels: bug

#58 - Hot fix wrong documentation reference

Pull Request - State: closed - Opened by stijnvanhoey over 4 years ago - 1 comment

#57 - Refactor of the model class

Pull Request - State: closed - Opened by jorisvandenbossche over 4 years ago - 1 comment

#55 - Binder not working for pull requests from forks (parked for now)

Issue - State: open - Opened by Beramos over 4 years ago - 3 comments
Labels: bug, wontfix

#54 - Add pip to environment.yml

Pull Request - State: closed - Opened by jorisvandenbossche over 4 years ago
Labels: enhancement

#53 - (do not merge!)

Pull Request - State: closed - Opened by Beramos over 4 years ago - 2 comments

#52 - Add binder link to each PR

Pull Request - State: closed - Opened by stijnvanhoey over 4 years ago - 3 comments

#51 - Sciensano.py saves a copy of dataset in data/raw folder

Pull Request - State: closed - Opened by twallema over 4 years ago

#50 - Docstring documentation and debugging of data acquisition functions

Pull Request - State: closed - Opened by twallema over 4 years ago

#49 - 'ICU' is both parameter as well as variable name

Issue - State: closed - Opened by stijnvanhoey over 4 years ago - 2 comments

#48 - clarification on numpy docstirng

Issue - State: closed - Opened by stijnvanhoey over 4 years ago - 2 comments

#47 - Wrote the first description of the datasets.

Pull Request - State: closed - Opened by twallema over 4 years ago

#46 - Move data scripts to proper folder

Pull Request - State: closed - Opened by stijnvanhoey over 4 years ago

#45 - xarray representation of model outputs

Issue - State: closed - Opened by stijnvanhoey over 4 years ago - 10 comments

#44 - Changes to ageStratified_scenarios notebook

Pull Request - State: closed - Opened by twallema over 4 years ago

#43 - Added dependencies, notebook for scenario analysis, added UZ Ghent data

Pull Request - State: closed - Opened by twallema over 4 years ago

#42 - Tryout refactoring model class

Issue - State: closed - Opened by stijnvanhoey over 4 years ago - 10 comments

#40 - add link to documentation website in README

Pull Request - State: closed - Opened by Beramos over 4 years ago - 5 comments
Labels: documentation

#39 - add build script sphinc

Pull Request - State: closed - Opened by Beramos over 4 years ago
Labels: documentation

#38 - Add packacge dependencies to setup

Pull Request - State: closed - Opened by stijnvanhoey almost 5 years ago - 1 comment

#37 - Modification to ideal network parameters in hpc scripts and demo

Pull Request - State: closed - Opened by twallema almost 5 years ago

#36 - Automate sphinx documentation build

Issue - State: closed - Opened by stijnvanhoey almost 5 years ago - 1 comment
Labels: documentation

#35 - Change repository structure

Pull Request - State: closed - Opened by stijnvanhoey almost 5 years ago - 8 comments

#34 - Exclude hardcoded refs to data files

Issue - State: closed - Opened by stijnvanhoey almost 5 years ago - 2 comments
Labels: enhancement, data handling

#33 - Issue templates: Contact information for non-code questions

Issue - State: closed - Opened by stijnvanhoey almost 5 years ago - 4 comments
Labels: enhancement, collaboration

#32 - Data handling and documentation

Issue - State: closed - Opened by stijnvanhoey almost 5 years ago - 7 comments
Labels: documentation, data handling

#31 - Modification of dynamics

Pull Request - State: closed - Opened by twallema almost 5 years ago

#30 - [function realTimeScenario] Visualistation of uncertainty band on model prediction

Issue - State: closed - Opened by twallema almost 5 years ago - 1 comment
Labels: bug, enhancement

#29 - Discrete optimization

Issue - State: open - Opened by twallema almost 5 years ago - 1 comment
Labels: enhancement

#28 - Fixed datetime conversion error, fixed forgotten propensities

Pull Request - State: closed - Opened by twallema almost 5 years ago

#27 - [calibrate_stochastic.py] Particle Swarm Optimisation output stream to a text file

Issue - State: closed - Opened by twallema almost 5 years ago
Labels: enhancement

#26 - Multiprocessing for single function evaluation

Issue - State: closed - Opened by twallema almost 5 years ago
Labels: enhancement, help wanted

#25 - Propose general layout for repository

Issue - State: closed - Opened by stijnvanhoey almost 5 years ago - 10 comments
Labels: enhancement, question

#24 - Implemented new hospital dynamics

Pull Request - State: closed - Opened by twallema almost 5 years ago

#23 - Implemented new hospital dynamics

Pull Request - State: closed - Opened by twallema almost 5 years ago

#22 - Cleanup and bug fixed

Pull Request - State: closed - Opened by JennaVergeynst almost 5 years ago - 1 comment

#20 - First economical model

Pull Request - State: closed - Opened by CyrilGarneau almost 5 years ago - 3 comments
Labels: enhancement

#19 - Added PSO solver in function 'fit' of SEIRSNetworkModel

Pull Request - State: closed - Opened by twallema almost 5 years ago

#18 - update readme

Pull Request - State: closed - Opened by JennaVergeynst almost 5 years ago - 1 comment
Labels: enhancement

#17 - Update readme

Pull Request - State: closed - Opened by JennaVergeynst almost 5 years ago - 1 comment

#16 - Updated all available visualization functions with Daan's changes

Pull Request - State: closed - Opened by twallema almost 5 years ago

#15 - Update the function plotInfected from the class SEIRSAgeModel

Pull Request - State: closed - Opened by DaanVanHauwermeiren almost 5 years ago - 1 comment

#14 - Finished scenario specific functions in SEIRSAgeModel and SEIRSNetworkModel

Pull Request - State: closed - Opened by twallema almost 5 years ago

#13 - Data extraction from Sciensano

Pull Request - State: closed - Opened by danillana almost 5 years ago
Labels: enhancement

#12 - Fix README hpc (typos)

Pull Request - State: closed - Opened by Beramos almost 5 years ago
Labels: enhancement

#11 - Added figure on HPC computation time

Pull Request - State: closed - Opened by twallema almost 5 years ago

#10 - Improving HPC README

Pull Request - State: closed - Opened by Beramos almost 5 years ago
Labels: documentation

#8 - Added simulation and parameter fitting functions to class SEIRSNetworkModel

Pull Request - State: closed - Opened by Beramos almost 5 years ago
Labels: enhancement

#7 - Added simulation and parameter fitting functions to class SEIRSNetworkModel

Pull Request - State: closed - Opened by twallema almost 5 years ago

#6 - Binder not working

Issue - State: closed - Opened by Beramos almost 5 years ago - 1 comment
Labels: bug

#5 - Fix Python enviroments

Pull Request - State: closed - Opened by Beramos almost 5 years ago
Labels: bug

#4 - Fixing binder by adding enviroment

Pull Request - State: closed - Opened by Beramos almost 5 years ago
Labels: bug

#3 - add binder link

Pull Request - State: closed - Opened by Beramos almost 5 years ago

#2 - Improvement README

Pull Request - State: closed - Opened by Beramos almost 5 years ago - 1 comment

#1 - Major update with regard to object orientated implementation.

Pull Request - State: closed - Opened by twallema almost 5 years ago