Ecosyste.ms: Issues

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GitHub / ucsd-ccbb/cirrus-ngs issues and pull requests

#24 - Incorrect path in yaml file upload

Issue - State: closed - Opened by artnasamran over 6 years ago - 1 comment

#23 - miRNA-Seq Pipeline status check error

Issue - State: open - Opened by artnasamran over 6 years ago

#22 - CFNClusterManager does not overwrite preexisting config file

Issue - State: open - Opened by artnasamran over 6 years ago - 1 comment

#21 - gatk upload on cluster creation notebook

Issue - State: open - Opened by mustafa-guler over 6 years ago - 1 comment

#19 - Finish unit testing for check status functionality

Issue - State: open - Opened by AmandaBirmingham over 6 years ago

#16 - so many merge_counts in cluster util dir

Issue - State: open - Opened by mustafa-guler almost 7 years ago

#15 - bwa_mutect no final.bam

Issue - State: closed - Opened by mustafa-guler almost 7 years ago

#14 - dnaseq: merge step names

Issue - State: open - Opened by mustafa-guler almost 7 years ago

#13 - no summary output for star_rsem

Issue - State: closed - Opened by mustafa-guler almost 7 years ago

#12 - kallisto failure

Issue - State: closed - Opened by mustafa-guler almost 7 years ago - 1 comment

#11 - rnaseq: consistency in analysis steps

Issue - State: closed - Opened by mustafa-guler almost 7 years ago - 1 comment

#10 - smallrnaseq: remove small reads before alignment

Issue - State: open - Opened by mustafa-guler almost 7 years ago - 1 comment

#9 - smallrnaseq & rnaseq: notebook_dir not necessary

Issue - State: closed - Opened by mustafa-guler almost 7 years ago - 1 comment

#8 - all notebooks: no status tracking

Issue - State: open - Opened by mustafa-guler almost 7 years ago - 1 comment

#7 - STAR/RSEM pipeline

Issue - State: open - Opened by kmfisch about 7 years ago

#6 - Can't recognize bowtie2-build

Issue - State: closed - Opened by miko-798 over 7 years ago - 2 comments

#5 - Develop primary quality control notebook suitable for customer report

Issue - State: closed - Opened by AmandaBirmingham over 7 years ago
Labels: enhancement

#4 - Discuss: Remove __main__s that exist only for testing?

Issue - State: open - Opened by AmandaBirmingham over 7 years ago - 1 comment
Labels: question

#3 - Write unit test(s) for util/DesignFileLoader.load_design_file

Issue - State: closed - Opened by AmandaBirmingham over 7 years ago
Labels: tests

#2 - Document required format(s) for primary pipeline design files

Issue - State: open - Opened by AmandaBirmingham over 7 years ago
Labels: documentation

#1 - YamlFileReader, PBSTracker

Issue - State: closed - Opened by mustafa-guler over 7 years ago - 1 comment