Ecosyste.ms: Issues

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GitHub / ucsd-ccbb/VAPr issues and pull requests

#25 - update docs for ANNOVAR installation

Issue - State: open - Opened by jiarui-hu over 3 years ago

#24 - VAPr crashes when necessary db not installed in ANNOVAR

Issue - State: open - Opened by dbrami over 6 years ago

#23 - Parsing VCF ANN fields

Issue - State: open - Opened by dbrami over 6 years ago

#22 - Update documentation and post to Read The Docs

Issue - State: closed - Opened by carlomazzaferro about 7 years ago - 1 comment
Labels: enhancement

#19 - Allow previously queried and stored variants to be shared across projects

Issue - State: closed - Opened by kmfisch over 7 years ago - 1 comment
Labels: wontfix

#17 - Add flag to query only fields of interest in myvariant.info

Issue - State: closed - Opened by kmfisch over 7 years ago - 1 comment
Labels: enhancement

#16 - Create command-line executable

Issue - State: open - Opened by kmfisch over 7 years ago - 1 comment
Labels: question

#15 - Optimize variant filtering/prioritization

Issue - State: closed - Opened by kmfisch over 7 years ago - 2 comments
Labels: enhancement

#14 - Create write csv function after myvariant.info annotation before loading into mongodb as intermediate output

Issue - State: closed - Opened by kmfisch over 7 years ago - 2 comments
Labels: enhancement

#13 - Add sample name to json for each document from filename, rather than embedded sample name in vcf

Issue - State: open - Opened by kmfisch over 7 years ago - 2 comments
Labels: question

#12 - Optimize performance -- query myvariant.info for union of all sample variants

Issue - State: closed - Opened by kmfisch over 7 years ago - 1 comment
Labels: enhancement

#11 - Add filter after annovar annotation to include those != synonymous

Issue - State: closed - Opened by kmfisch over 7 years ago - 1 comment
Labels: wontfix

#10 - Check data files used by tests into GitHub repository

Issue - State: closed - Opened by AmandaBirmingham over 7 years ago - 1 comment
Labels: bug

#9 - Fix CSV output format

Issue - State: closed - Opened by kmfisch over 7 years ago - 1 comment
Labels: bug

#8 - Make sure csv writer works in example notebook post-filtering

Issue - State: closed - Opened by kmfisch over 7 years ago - 1 comment
Labels: bug

#7 - Fancy documentation

Issue - State: closed - Opened by kmfisch over 7 years ago - 1 comment
Labels: enhancement

#6 - Fix de novo variant filter

Issue - State: closed - Opened by kmfisch over 7 years ago - 1 comment
Labels: bug

#5 - Add detailed docstrings for pre-built queries/filters

Issue - State: closed - Opened by kmfisch over 7 years ago - 1 comment
Labels: enhancement

#4 - Add Mutect Parser

Issue - State: open - Opened by kmfisch over 7 years ago
Labels: enhancement

#3 - Handling of reading multiple VCF files

Issue - State: closed - Opened by kmfisch over 7 years ago - 1 comment
Labels: bug, enhancement

#2 - Design File Configuration

Issue - State: closed - Opened by kmfisch over 7 years ago - 2 comments
Labels: enhancement

#1 - Expand VaprAnnotator interface to accept list of custom ANNOVAR dbs

Issue - State: open - Opened by kmfisch over 7 years ago - 1 comment
Labels: enhancement