Ecosyste.ms: Issues

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GitHub / ucsc-cgp/cgp-dss-data-loader issues and pull requests

#61 - Refactor integration tests in loader

Issue - State: open - Opened by cricketsloan almost 6 years ago

#60 - Loader config file support

Issue - State: open - Opened by cricketsloan almost 6 years ago

#59 - Refresh s3 credentials. Addresses #55.

Pull Request - State: closed - Opened by DailyDreaming almost 6 years ago - 1 comment

#58 - Refresh s3 credentials when they expire. Addresses #55.

Pull Request - State: closed - Opened by DailyDreaming almost 6 years ago

#57 - Don't add definedBy field for the schema

Issue - State: open - Opened by cricketsloan almost 6 years ago

#56 - Ignore this PR. Just fetching an error.

Pull Request - State: closed - Opened by DailyDreaming almost 6 years ago

#54 - Fix typos in README

Pull Request - State: closed - Opened by jessebrennan almost 6 years ago

#53 - Develop support for loading GUIDs for bundles

Issue - State: open - Opened by cricketsloan almost 6 years ago

#52 - Limit concurrent threads to 5 to not overload azul

Pull Request - State: closed - Opened by jessebrennan almost 6 years ago - 2 comments

#51 - Flake8 fixes.

Pull Request - State: closed - Opened by DailyDreaming almost 6 years ago

#49 - Loader with additional credentials.

Pull Request - State: closed - Opened by DailyDreaming almost 6 years ago - 1 comment

#48 - Update to load with schema including harmonized variables

Issue - State: closed - Opened by mikebaumann almost 6 years ago

#47 - Correct/improve support for the `--dry-run` option (resolves #46)

Pull Request - State: closed - Opened by mikebaumann almost 6 years ago

#46 - The `--dry-run` support needs repair

Issue - State: closed - Opened by mikebaumann almost 6 years ago

#44 - Accomodate inaccessible cloud URLs when loading data by reference

Issue - State: closed - Opened by mikebaumann almost 6 years ago - 1 comment

#43 - Remove obsolete file reference to bundle UUID (resolves #42)

Pull Request - State: closed - Opened by mikebaumann almost 6 years ago

#42 - Remove obsolete file reference to bundle UUID

Issue - State: closed - Opened by mikebaumann almost 6 years ago

#41 - Fix loader to load in parallel by default (resolves #40)

Pull Request - State: closed - Opened by jessebrennan about 6 years ago

#40 - Defaults to serially instead of concurrently for loading

Issue - State: closed - Opened by jessebrennan about 6 years ago

#39 - Update DSS data loader to use dcp-cli v4.2.1

Issue - State: closed - Opened by cricketsloan about 6 years ago - 1 comment

#38 - Tests failing with 401 for Google credentials

Issue - State: closed - Opened by jessebrennan about 6 years ago - 2 comments

#37 - Update loader to work with whitelisted dss (resolves STOR-2)

Pull Request - State: closed - Opened by jessebrennan about 6 years ago

#35 - Update data loader to use updated HCA initialization code

Issue - State: closed - Opened by cricketsloan about 6 years ago - 2 comments

#34 - Remove old cruft (resolves LOAD-25)

Pull Request - State: closed - Opened by jessebrennan about 6 years ago - 2 comments

#33 - Improve loader performance by adding threading (resolves LOAD-7)

Pull Request - State: closed - Opened by jessebrennan about 6 years ago - 1 comment

#32 - Move decorator that prevented tests from running

Pull Request - State: closed - Opened by jessebrennan about 6 years ago

#31 - Add more tests for loader (resolves LOAD-30, LOAD-23)

Pull Request - State: closed - Opened by jessebrennan about 6 years ago - 3 comments

#30 - Add instructions to set up cloud credentials in README (resolves LOAD-26)

Pull Request - State: closed - Opened by jessebrennan about 6 years ago - 1 comment

#29 - Google authN support for DSS loader

Issue - State: closed - Opened by cricketsloan about 6 years ago

#28 - Loader should handle 500 errors

Issue - State: closed - Opened by jessebrennan about 6 years ago - 1 comment

#27 - Update command name in readme

Pull Request - State: closed - Opened by jessebrennan about 6 years ago

#26 - Readme should use the new dssload command

Issue - State: closed - Opened by jessebrennan about 6 years ago

#25 - Loader needs more thorough testing

Issue - State: closed - Opened by jessebrennan over 6 years ago - 1 comment

#24 - Make loader pip installable

Pull Request - State: closed - Opened by jessebrennan over 6 years ago - 1 comment

#23 - Use access control mechanism provided for official cloud locations

Issue - State: closed - Opened by cricketsloan over 6 years ago - 2 comments

#22 - Standard loader needs more complete testing

Issue - State: closed - Opened by jessebrennan over 6 years ago

#20 - Remove old cruft from outdated loader sources and formats

Issue - State: closed - Opened by cricketsloan over 6 years ago

#19 - Support new schema (resolves LOAD-18, LOAD-17, LOAD-20, LOAD-21)

Pull Request - State: closed - Opened by jessebrennan over 6 years ago - 2 comments

#18 - The user should be able to reload the same file to no ill effect

Issue - State: closed - Opened by cricketsloan over 6 years ago - 1 comment

#17 - Loader improvements

Issue - State: closed - Opened by cricketsloan over 6 years ago - 1 comment
Labels: Epic

#16 - Update loader to support new schema

Issue - State: closed - Opened by cricketsloan over 6 years ago

#15 - Update json schema for loader to match new schema from transormer

Issue - State: closed - Opened by cricketsloan over 6 years ago - 1 comment

#14 - Add a basic transformer to parse data from sheepdog (resolves LOAD-12, LOAD-5)

Pull Request - State: closed - Opened by jessebrennan over 6 years ago - 2 comments

#13 - Make transformer pip-installable

Issue - State: closed - Opened by cricketsloan over 6 years ago

#12 - Make data loader pip-installable

Issue - State: closed - Opened by cricketsloan over 6 years ago

#11 - Add support for loading from Gen3 (resolves LOAD-4, LOAD-6)

Pull Request - State: closed - Opened by jessebrennan over 6 years ago - 2 comments

#10 - Improve loading performance

Issue - State: closed - Opened by cricketsloan over 6 years ago

#9 - Develop support for loading metadata from selected source (GEN3)

Issue - State: closed - Opened by cricketsloan over 6 years ago - 2 comments

#8 - Add support for specifying UUID (and version?) for files and bundles

Issue - State: closed - Opened by cricketsloan over 6 years ago - 3 comments

#7 - Develop support for loading GUIDs for data files

Issue - State: closed - Opened by cricketsloan over 6 years ago

#6 - Clean-up POC data loader code

Issue - State: closed - Opened by cricketsloan over 6 years ago

#5 - Develop CGP DSS Core Data Loader

Issue - State: closed - Opened by cricketsloan over 6 years ago - 1 comment

#4 - Implement the metadata transformer to DSS

Issue - State: closed - Opened by cricketsloan over 6 years ago - 1 comment

#3 - Make reloading failed bundles easy

Issue - State: open - Opened by cricketsloan over 6 years ago

#2 - Design CGP Data Loader

Issue - State: closed - Opened by cricketsloan over 6 years ago - 1 comment

#1 - Support Google auth as user to enable DSS data loading from EC2 instance

Issue - State: closed - Opened by cricketsloan over 6 years ago - 4 comments