uc-cdis/cohort-middleware issues and pull requests

#72 - chore(deps): bump github.com/gin-gonic/gin from 1.7.4 to 1.9.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#71 - feat: adding tracer for DataDog

Pull Request - State: open - Opened by m0nhawk over 1 year ago

#70 - Fix cohort listing and improve existing warning on startup

Pull Request - State: closed - Opened by pieterlukasse over 1 year ago

#69 - Adding a default timeout to all queries

Pull Request - State: closed - Opened by pieterlukasse over 1 year ago

#68 - Fix: adjust populateConceptValue to read values based on conceptClassId

Pull Request - State: closed - Opened by pieterlukasse over 1 year ago

#67 - Feat/test data generator

Pull Request - State: closed - Opened by pieterlukasse over 1 year ago

#66 - chore(deps): bump golang.org/x/crypto from 0.0.0-20210921155107-089bfa567519 to 0.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#65 - chore(deps): bump golang.org/x/sys from 0.0.0-20211025201205-69cdffdb9359 to 0.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#64 - chore(deps): bump golang.org/x/text from 0.3.7 to 0.3.8

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#63 - Fix/align all cohort pair filter queries

Pull Request - State: closed - Opened by pieterlukasse almost 2 years ago

#62 - feat: extra tests for QueryFilterByCohortPairsHelper

Pull Request - State: closed - Opened by pieterlukasse almost 2 years ago

#61 - chore(deps): bump github.com/gin-gonic/gin from 1.7.4 to 1.7.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 2 comments
Labels: dependencies

#60 - Fix: make same null checks for breakdown and other queries

Pull Request - State: closed - Opened by pieterlukasse almost 2 years ago

#59 - Fix: use INTERSECT around the UNION of each pair

Pull Request - State: closed - Opened by pieterlukasse almost 2 years ago

#58 - Improve query performance and use dialect

Pull Request - State: closed - Opened by pieterlukasse almost 2 years ago

#57 - Feat: use new observation_continuous view to speed up queries

Pull Request - State: closed - Opened by pieterlukasse almost 2 years ago

#56 - Feat: improve logging around db connections

Pull Request - State: closed - Opened by pieterlukasse almost 2 years ago

#55 - fix: adjust GenerateHistogramData to correctly deal with data that has little variation

Pull Request - State: closed - Opened by pieterlukasse almost 2 years ago

#54 - Fix: change histogram endpoint output to return correct JSON

Pull Request - State: closed - Opened by pieterlukasse almost 2 years ago

#53 - New validation method to find duplicated entries in observation table

Pull Request - State: closed - Opened by pieterlukasse about 2 years ago - 1 comment

#52 - Adjust breakdown stats to exclude the intersection of cohorts paired as dichotomous covariates

Pull Request - State: closed - Opened by pieterlukasse about 2 years ago - 1 comment

#51 - feat histogram

Pull Request - State: closed - Opened by UchicagoZchen138 over 2 years ago

#50 - cohort overlap stats without filtering for HARE variables

Pull Request - State: closed - Opened by m0nhawk over 2 years ago

#49 - Improve docs / comment on missing validation

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#48 - test with 1 person multiple hare

Pull Request - State: closed - Opened by UchicagoZchen138 over 2 years ago

#47 - Add variable name to attrition table

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago - 2 comments

#46 - test additional cohortdata definition tests

Pull Request - State: closed - Opened by UchicagoZchen138 over 2 years ago

#45 - feat use concept names instead of concept value in attrition header

Pull Request - State: closed - Opened by UchicagoZchen138 over 2 years ago

#44 - Update endpoints to use variables list

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago - 1 comment

#43 - feat update column name

Pull Request - State: closed - Opened by UchicagoZchen138 over 2 years ago

#42 - new csv columns

Pull Request - State: closed - Opened by UchicagoZchen138 over 2 years ago

#41 - Revert "test(query-timeout): testing adding query timeout to match rds timeout"

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#40 - test(query-timeout): testing adding query timeout to match rds timeout

Pull Request - State: closed - Opened by emalinowski over 2 years ago - 1 comment

#39 - adjust code to consistently use value_as_concept_id

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#38 - adjust Breakdown-Stats to coded values and respective value names

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#37 - tests for - ignore null values in breakdown endpoint

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#36 - changed query to ignore NULL values for breakdown field

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#35 - swagger docs for new endpoint

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#34 - new endpoint for concepts by type; removed domain_id from all concept endpoints

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#33 - trying to improve exception handling in concept module

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#32 - revert custom gorm type for concept_type

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#31 - changing HARE concept ids

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#30 - Check overlap endpoint

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#29 - added more details on how to deploy the right configuration to QA

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#28 - attrition csv endpoint

Pull Request - State: closed - Opened by UchicagoZchen138 over 2 years ago

#27 - Add HARE to test data

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#26 - feat: use master branch for GH Action

Pull Request - State: closed - Opened by m0nhawk over 2 years ago

#25 - Return concept_type for some of the `concept` endpoints

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#24 - Improve controller coverage

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#23 - adding new concept-breakdown endpoint

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#22 - Tests for middlewares/auth

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#21 - Sort cohort by size

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#20 - More integration tests

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#19 - feat: codeql scan GitHub action

Pull Request - State: closed - Opened by m0nhawk over 2 years ago

#18 - fix: golang linter errors

Pull Request - State: closed - Opened by m0nhawk over 2 years ago

#17 - feat: add reusable workflows

Pull Request - State: closed - Opened by m0nhawk over 2 years ago

#16 - Feat/goveralls action

Pull Request - State: closed - Opened by m0nhawk over 2 years ago

#15 - Add tests

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#14 - New POST endpoint for retrieving basic concept information

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago - 1 comment

#13 - Feat/swagger

Pull Request - State: closed - Opened by m0nhawk over 2 years ago

#12 - adjusted db connection code to only open connection once per db

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#11 - Performance improvements for concept-stats and for full data (CSV) endpoints

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#10 - Fix performance issue in cohort-data

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#9 - Fix performance issue in cohort-stats

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#8 - fix tableprefix bug in sqlserver part

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#7 - Use extra table to discover OMOP and RESULTS schema names

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#6 - feat: adding GitHub Actions to build Docker image

Pull Request - State: closed - Opened by m0nhawk over 2 years ago

#5 - CSV endpoint to return full list of persons in a cohort, enriched with the values of the selected concepts

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago

#4 - Adding new endpoints, improving docs and simplifying local dev

Pull Request - State: closed - Opened by pieterlukasse over 2 years ago - 1 comment

#3 - feat: adding Swagger

Pull Request - State: closed - Opened by m0nhawk over 2 years ago

#2 - feat s3 upload

Pull Request - State: closed - Opened by m0nhawk over 2 years ago - 1 comment

#1 - Feat/init

Pull Request - State: closed - Opened by m0nhawk over 2 years ago

GitHub / uc-cdis/cohort-middleware issues and pull requests