uaf-arctic-eco-modeling/dvm-dos-tem issues and pull requests

#746 - Calibration updates

Pull Request - State: open - Opened by valeriabriones 2 days ago

#745 - Likely memory leak

Issue - State: open - Opened by tobeycarman 6 days ago

#744 - Remove git LFS hashes.

Pull Request - State: closed - Opened by tobeycarman 18 days ago

#743 - Implements holding for more regional output variables

Pull Request - State: closed - Opened by rarutter 26 days ago

#742 - Tweaking formatting to be roughly consistent

Pull Request - State: closed - Opened by rarutter 26 days ago

#741 - Modify/improve MadsTEMDriver.observed_vec function, fix bug.

Pull Request - State: closed - Opened by tobeycarman 26 days ago

#740 - Implement output accumulation for LAI, LWCLAYER, RG, SOMA SOMCR, SOMPR, SOMRAWC

Pull Request - State: closed - Opened by dogukanteber 26 days ago - 1 comment

#739 - Implement output accumulation for INGPP

Pull Request - State: closed - Opened by dogukanteber 26 days ago - 1 comment

#738 - Key Error when running `AC-MADS-TEM.jl` with target data containing compartments (E.g. VEGC, VEGN)

Issue - State: closed - Opened by Benjamin-Maglio about 1 month ago - 21 comments

#737 - Initial stab at layer report browser/animator

Pull Request - State: open - Opened by tobeycarman about 1 month ago

#736 - add git sha to run-status and restart files

Issue - State: open - Opened by tobeycarman about 1 month ago

#734 - Add feature to `util/outspec.py` to recreate out spec file from folder of outputs

Issue - State: open - Opened by tobeycarman about 2 months ago
Labels: enhancement

#733 - Change log level in MadsTEMDriver to use new levels

Pull Request - State: closed - Opened by tobeycarman about 2 months ago

#732 - MSE or RMSE in `calc_metrics()` in `SA_post_hoc_analysis.py`

Issue - State: open - Opened by Benjamin-Maglio about 2 months ago

#731 - Corrects order of fronts copied from RD to Ground

Pull Request - State: closed - Opened by rarutter about 2 months ago

#730 - Summarize ALL CMT parameters in `param.py`

Issue - State: open - Opened by Benjamin-Maglio 2 months ago
Labels: enhancement

#729 - ORGN and AVLN abruptly drop to zero during future simulation

Issue - State: open - Opened by amullen01 2 months ago - 1 comment
Labels: bug, science

#728 - Add equilibrium average year range selection for `SA_setup_and_run.py` or yaml config file

Issue - State: open - Opened by Benjamin-Maglio 3 months ago
Labels: enhancement, AC-REFAC

#727 - Update readme, license

Pull Request - State: closed - Opened by tobeycarman 3 months ago

#726 - Confirm correct water vapor pressure units for dvm-dos-tem input

Issue - State: open - Opened by amullen01 3 months ago - 1 comment
Labels: question, science

#725 - General documentation

Pull Request - State: closed - Opened by tobeycarman 3 months ago

#724 - Test frame 2

Pull Request - State: closed - Opened by rarutter 3 months ago

#723 - add/improve ``runmask.py`` filtering capability.

Issue - State: open - Opened by tobeycarman 4 months ago

#722 - Logging reorg

Pull Request - State: closed - Opened by rarutter 4 months ago

#721 - Heterotrophic respiration increases and doesn't drop back down post-fire

Issue - State: open - Opened by amullen01 4 months ago - 4 comments

#721 - Heterotrophic respiration increases and doesn't drop back down post-fire

Issue - State: open - Opened by amullen01 4 months ago - 11 comments
Labels: bug, science

#720 - fix frootfrac re-adjustment so frootfrac cannot be nan

Pull Request - State: open - Opened by amullen01 4 months ago - 4 comments

#719 - AVLN constant after fire

Issue - State: open - Opened by amullen01 4 months ago
Labels: bug, science

#718 - Bump tornado from 6.3.3 to 6.4.1

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#717 - Improve Logging

Issue - State: open - Opened by dogukanteber 4 months ago

#715 - Simplify `ParentLayer.cpp` and `SnowLayer.cpp`

Pull Request - State: closed - Opened by dogukanteber 5 months ago - 2 comments

#713 - Bump jinja2 from 3.1.3 to 3.1.4

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#713 - Bump jinja2 from 3.1.3 to 3.1.4

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#711 - Baseline climate config

Pull Request - State: closed - Opened by rarutter 5 months ago

#710 - Increases default PR year count

Pull Request - State: closed - Opened by rarutter 6 months ago - 1 comment

#710 - Increases default PR year count

Pull Request - State: closed - Opened by rarutter 6 months ago - 1 comment

#708 - Fire severity index

Pull Request - State: closed - Opened by rarutter 6 months ago

#707 - Increase default PR year count

Issue - State: closed - Opened by rarutter 6 months ago
Labels: Fix

#706 - Burn-related code for severity < 0

Issue - State: closed - Opened by rarutter 6 months ago
Labels: Fix

#705 - Issues/mistakes in 'original' parameter files ie CMT2,3,4,5,6,7,12,20,21,31,44

Issue - State: closed - Opened by jsclein-uaf 6 months ago - 5 comments
Labels: bug, calibration

#704 - Confirm that the "observation" setting in user's config (yaml) file is being honored in all cases

Issue - State: open - Opened by jsclein-uaf 6 months ago - 1 comment
Labels: calibration

#703 - Change sphinx Example Experiment 0 to use demo data rather than from …

Pull Request - State: closed - Opened by tobeycarman 6 months ago

#703 - Change sphinx Example Experiment 0 to use demo data rather than from …

Pull Request - State: closed - Opened by tobeycarman 6 months ago

#702 - Standardize burn output names

Pull Request - State: closed - Opened by rarutter 6 months ago

#702 - Standardize burn output names

Pull Request - State: closed - Opened by rarutter 6 months ago

#701 - fix paths for building sphinx documentation

Issue - State: open - Opened by tobeycarman 6 months ago
Labels: bug, documentation

#701 - fix paths for building sphinx documentation

Issue - State: open - Opened by tobeycarman 6 months ago
Labels: bug, documentation

#700 - Bump pillow from 10.2.0 to 10.3.0

Pull Request - State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#699 - Issue, 667 seed path

Pull Request - State: closed - Opened by tobeycarman 6 months ago

#698 - Adding post-SA equilibrium checking functions

Pull Request - State: closed - Opened by Benjamin-Maglio 6 months ago

#697 - Turn off "squeezing" dimensions of subplots when plotting Sensitivity…

Pull Request - State: closed - Opened by tobeycarman 7 months ago

#696 - Add parameter to functions for printing prepared distributions ...

Pull Request - State: closed - Opened by tobeycarman 7 months ago

#695 - Fix the dependency error when building the images

Pull Request - State: closed - Opened by dogukanteber 7 months ago - 1 comment

#694 - Sensitivity, fails to plot distributions if there is only a single parameter (and single PFT) specified for the run.

Issue - State: closed - Opened by tobeycarman 7 months ago - 1 comment
Labels: bug, calibration

#693 - Let user specify formatting when printing distributions and initial guess for MADs work.

Issue - State: closed - Opened by tobeycarman 7 months ago - 1 comment
Labels: enhancement, calibration

#692 - Remove version requirement for Jinja template library.

Pull Request - State: closed - Opened by tobeycarman 7 months ago - 1 comment

#691 - docker mapping support image fails to build - dependency resolution problem with Jinja templating library

Issue - State: closed - Opened by tobeycarman 7 months ago
Labels: docker

#690 - Bump jinja2 from 2.11.3 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#689 - Bump pillow from 10.0.1 to 10.2.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#688 - fix plotting bug with AC-MADS-TEM.jl...

Pull Request - State: closed - Opened by tobeycarman 7 months ago

#686 - Ac refac

Pull Request - State: closed - Opened by tobeycarman 7 months ago

#685 - Issue when running calibration for a target with [leaf,stem,root]

Issue - State: closed - Opened by valeriabriones 7 months ago - 1 comment
Labels: bug, AC-REFAC, calibration

#683 - Add recommended options for users to supply custom parameter bounds to the SA process.

Issue - State: closed - Opened by tobeycarman 8 months ago - 1 comment
Labels: AC-REFAC, calibration

#682 - another small issue with some weird quotes using --csv2fwt-v1

Issue - State: open - Opened by jsclein-uaf 8 months ago - 3 comments
Labels: parameter utility tooling

#681 - param.py - small formatting issue, in output for calibration _targets

Issue - State: open - Opened by jsclein-uaf 8 months ago - 2 comments
Labels: bug, parameter utility tooling

#679 - Add log transform to function that generates uniform sample distribution in Sensitivity.py

Issue - State: open - Opened by tobeycarman 8 months ago
Labels: AC-REFAC, calibration

#678 - Unrecognized Argument in Sensitivity analysis

Issue - State: closed - Opened by valeriabriones 8 months ago - 1 comment
Labels: AC-REFAC

#674 - Evaluate the possibility of removing the dsb module/flag in favor of individual flags

Issue - State: open - Opened by rarutter 8 months ago

#673 - Add `--force-FRI` command line flag to main `dvmdostem` executable.

Issue - State: open - Opened by tobeycarman 8 months ago - 3 comments
Labels: enhancement

#672 - Add "auxiliary outputs" concept to Sensitivity and MadsTEMDriver and associated config files.

Issue - State: closed - Opened by tobeycarman 8 months ago - 1 comment
Labels: calibration

#671 - Write up description of recommended directory layout for a calibration project.

Issue - State: open - Opened by tobeycarman 8 months ago - 1 comment
Labels: documentation, AC-REFAC, calibration

#670 - Comments and documentation for demo yaml files

Issue - State: open - Opened by tobeycarman 8 months ago
Labels: documentation, AC-REFAC

#669 - Calibration/optimization workflow, need standardized methods to "export" the calibrated parameters when optimization is done.

Issue - State: open - Opened by tobeycarman 8 months ago - 1 comment
Labels: AC-REFAC, calibration

#668 - Remove duplicate/outdated documentation and examples

Issue - State: open - Opened by tobeycarman 8 months ago
Labels: AC-REFAC, calibration

#667 - Confirm that the "seed path" setting in user's config (yaml) file is being honored in all cases

Issue - State: closed - Opened by tobeycarman 8 months ago - 4 comments
Labels: AC-REFAC, calibration

#666 - Implement "equilibrium state" test for SA part of calibration process.

Issue - State: open - Opened by tobeycarman 9 months ago - 9 comments
Labels: enhancement, calibration

#664 - cmt_firepar.txt file is missing data

Issue - State: open - Opened by jsclein-uaf 9 months ago - 3 comments
Labels: bug, parameter utility tooling

#662 - Add wild fire setting switches

Pull Request - State: open - Opened by JoshuaRady 9 months ago - 6 comments

#661 - param.py formatting problem, some numbers are needlessly in scientific notation, when they would be easier to read in standard format.

Issue - State: open - Opened by tobeycarman 9 months ago
Labels: bug, parameter utility tooling

#659 - param_util.py bug with specifying absolute vs relative paths to param files

Issue - State: open - Opened by jsclein-uaf 9 months ago
Labels: bug, parameter utility tooling

#658 - Bug with docker permissions for non-root users

Issue - State: open - Opened by tobeycarman 9 months ago - 1 comment
Labels: bug, docker

#657 - Soil thermal processes w/r/t/ root distribution and growing days

Issue - State: open - Opened by rarutter 9 months ago
Labels: question, documentation

#656 - add save figure options to plot_output_var.py script

Issue - State: open - Opened by tobeycarman 9 months ago
Labels: enhancement

#655 - Bug with `PYTHONPATH` not being set for develop user in docker containers.

Issue - State: open - Opened by tobeycarman 9 months ago - 1 comment
Labels: bug, docker

#654 - `SA_post_hoc_analysis.plot_relationships(...)` change default behavior

Issue - State: open - Opened by tobeycarman 9 months ago
Labels: enhancement, calibration

#653 - SA_post_hoc_analysis, plotting save paths/locations.

Issue - State: closed - Opened by tobeycarman 9 months ago - 2 comments
Labels: bug, Fix, AC-REFAC, calibration

#652 - `SA_post_hoc_analysis.plot_relationships(..)`, bug with comparing single variable and single parameter

Issue - State: closed - Opened by Benjamin-Maglio 9 months ago - 1 comment
Labels: bug, AC-REFAC

#651 - `SA_post_hoc_analysis.plot_output_scatter(..)`, but with laying out the grid of subplots.

Issue - State: closed - Opened by tobeycarman 9 months ago - 1 comment
Labels: bug, AC-REFAC

#650 - Fix `ModuleNotFoundError` for `SA_post_hoc_analysis.plot_corr_heatmap(...)` function.

Issue - State: open - Opened by tobeycarman 9 months ago
Labels: bug, calibration

#649 - Add initial value marker to `Sensitivity.py::plot_sensitivity_matrix`

Issue - State: open - Opened by tobeycarman 9 months ago
Labels: enhancement, calibration

#648 - Finish implementing `calib_mode` in `MadsTEMDriver.py`

Issue - State: closed - Opened by tobeycarman 9 months ago - 1 comment
Labels: bug, enhancement, AC-REFAC

#647 - fix/improve error handling in SA_setup_and_run.py

Issue - State: open - Opened by tobeycarman 9 months ago
Labels: enhancement, Fix, calibration

#646 - Standardize name of the "calibration mode" setting in the yaml files that are used to control the sensitivity analysis and the mads assisted calibration.

Issue - State: closed - Opened by tobeycarman 9 months ago - 1 comment
Labels: AC-REFAC

GitHub / uaf-arctic-eco-modeling/dvm-dos-tem issues and pull requests