Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / tzok/rnapolis-py issues and pull requests

#182 - build: bump black from 24.3.0 to 24.4.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#181 - build: bump hypothesis from 6.100.1 to 6.100.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#180 - build: bump pytest from 8.1.1 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#179 - build: bump orjson from 3.10.0 to 3.10.1

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#178 - build: bump hypothesis from 6.100.0 to 6.100.1

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#177 - build: bump black from 24.3.0 to 24.4.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#176 - build: bump scipy from 1.12.0 to 1.13.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#175 - build: bump mmcif from 0.86.0 to 0.87.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#174 - build: bump orjson from 3.9.15 to 3.10.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#173 - build: bump hypothesis from 6.99.13 to 6.100.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#172 - build: bump dependabot/fetch-metadata from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, github_actions

#171 - build: bump hypothesis from 6.99.6 to 6.99.13

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#170 - build: bump graphviz from 0.20.1 to 0.20.3

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#169 - fix: select first available model

Pull Request - State: closed - Opened by tzok 11 months ago

#168 - fix: handle multi-model files

Pull Request - State: closed - Opened by tzok 11 months ago

#167 - build: bump graphviz from 0.20.1 to 0.20.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#166 - build: bump black from 24.2.0 to 24.3.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#165 - build: bump hypothesis from 6.99.2 to 6.99.6

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#164 - fix: handling of reverse strand

Pull Request - State: closed - Opened by tzok 11 months ago

#163 - fix: match whole sequences in rfam_folder

Pull Request - State: closed - Opened by tzok 11 months ago

#162 - fix: parsing of cmsearch output

Pull Request - State: closed - Opened by tzok 11 months ago

#161 - feat: use rfam defaults for infernal

Pull Request - State: closed - Opened by tzok 11 months ago

#160 - build: bump hypothesis from 6.98.15 to 6.99.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#159 - build: bump pytest from 8.1.0 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#158 - fix: add threading.Lock to solve synchronization problems

Pull Request - State: closed - Opened by tzok 11 months ago

#157 - build: bump mmcif from 0.85.1 to 0.86.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#156 - build: bump hypothesis from 6.98.12 to 6.98.15

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#155 - build: bump pytest from 8.0.2 to 8.1.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#154 - build: bump pytest from 8.0.1 to 8.0.2

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#153 - build: bump hypothesis from 6.98.8 to 6.98.12

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#152 - build: bump orjson from 3.9.13 to 3.9.15

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#151 - build: bump pytest from 8.0.0 to 8.0.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#150 - build: bump black from 24.1.1 to 24.2.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#149 - build: bump orjson from 3.9.13 to 3.9.14

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies, python

#148 - build: bump hypothesis from 6.98.3 to 6.98.8

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#147 - build: bump numpy from 1.26.3 to 1.26.4

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#146 - build: bump hypothesis from 6.97.1 to 6.98.3

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#145 - build: bump hypothesis from 6.97.1 to 6.98.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#144 - build: bump orjson from 3.9.12 to 3.9.13

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#143 - feat: use ThreadPoolExecutor to speed up running cmsearch

Pull Request - State: closed - Opened by tzok about 1 year ago

#142 - build: bump hypothesis from 6.93.0 to 6.97.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies, python

#141 - build: bump orjson from 3.9.10 to 3.9.12

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#140 - build: bump hypothesis from 6.93.0 to 6.96.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#139 - build: bump mmcif from 0.84 to 0.85.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#138 - build: bump scipy from 1.11.4 to 1.12.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#133 - build: bump hypothesis from 6.92.1 to 6.92.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#132 - build: bump mmcif from 0.82 to 0.83

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#131 - fix: handle lowercase and DNA sequences

Pull Request - State: closed - Opened by tzok about 1 year ago

#130 - chore: set version to 0.3.1

Pull Request - State: closed - Opened by tzok about 1 year ago

#129 - feat: add rfam-folder CLI tool

Pull Request - State: closed - Opened by tzok about 1 year ago

#128 - build: bump hypothesis from 6.92.0 to 6.92.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#127 - build: bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#126 - build: bump mmcif from 0.81 to 0.82

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#125 - build: bump hypothesis from 6.91.0 to 6.92.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#124 - build: bump hypothesis from 6.90.0 to 6.91.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#123 - build: bump hypothesis from 6.89.1 to 6.90.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#122 - feat: add molecule filter

Pull Request - State: closed - Opened by tzok about 1 year ago

#121 - build: bump scipy from 1.11.3 to 1.11.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#120 - build: bump hypothesis from 6.88.3 to 6.89.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#119 - build: bump numpy from 1.26.1 to 1.26.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#118 - feat: decompose secondary structure extraction into two steps

Pull Request - State: closed - Opened by tzok over 1 year ago

#117 - release: 0.1.5

Pull Request - State: closed - Opened by tzok over 1 year ago

#115 - build: bump hypothesis from 6.88.1 to 6.88.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#114 - build: bump orjson from 3.9.9 to 3.9.10

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#113 - build: bump hypothesis from 6.88.0 to 6.88.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#112 - build: bump numpy from 1.26.0 to 1.26.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#111 - build: bump hypothesis from 6.87.3 to 6.88.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#110 - build: bump orjson from 3.9.7 to 3.9.9

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#109 - build: bump hypothesis from 6.87.1 to 6.87.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#108 - build: bump scipy from 1.11.2 to 1.11.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#107 - build: bump hypothesis from 6.87.0 to 6.87.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#106 - build: bump hypothesis from 6.86.1 to 6.87.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#105 - Enquiry about extract_secondary_structure

Issue - State: closed - Opened by GRAPH-0 over 1 year ago - 2 comments

#104 - build: bump numpy from 1.25.2 to 1.26.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#103 - build: bump hypothesis from 6.84.3 to 6.86.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#102 - build: bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, github_actions

#101 - build: bump orjson from 3.9.5 to 3.9.7

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#100 - build: bump hypothesis from 6.83.1 to 6.84.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#99 - build: bump hypothesis from 6.82.6 to 6.83.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#98 - build: bump scipy from 1.11.1 to 1.11.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#97 - build: bump orjson from 3.9.4 to 3.9.5

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#96 - build: bump hypothesis from 6.82.4 to 6.82.6

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#95 - feat: check if nucleobase has all atoms

Pull Request - State: closed - Opened by tzok over 1 year ago

#94 - build: bump hypothesis from 6.82.2 to 6.82.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#93 - build: bump orjson from 3.9.3 to 3.9.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#92 - build: bump orjson from 3.9.2 to 3.9.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#91 - build: bump hypothesis from 6.82.0 to 6.82.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#90 - build: bump numpy from 1.25.1 to 1.25.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#89 - release: 0.1.3

Pull Request - State: closed - Opened by tzok over 1 year ago

#88 - release version 0.1.2

Pull Request - State: closed - Opened by tzok over 1 year ago

#87 - feat: create BpSeq from string

Pull Request - State: closed - Opened by tzok over 1 year ago

#86 - build: bump hypothesis from 6.81.2 to 6.82.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#85 - build: bump hypothesis from 6.80.1 to 6.81.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#84 - build: bump hypothesis from 6.80.0 to 6.80.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#83 - build: bump numpy from 1.25.0 to 1.25.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#82 - build: bump orjson from 3.9.1 to 3.9.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#81 - build: bump scipy from 1.11.0 to 1.11.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#80 - build: bump hypothesis from 6.79.2 to 6.80.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#79 - build: bump hypothesis from 6.79.1 to 6.79.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python