Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / tzok/rnapolis-py issues and pull requests

#282 - build: bump hypothesis from 6.122.6 to 6.123.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: dependencies, python

#281 - build: bump orjson from 3.10.12 to 3.10.13

Pull Request - State: open - Opened by dependabot[bot] about 1 month ago
Labels: dependencies, python

#280 - build: bump ruff from 0.8.3 to 0.8.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: dependencies, python

#279 - build: bump hypothesis from 6.122.3 to 6.122.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: dependencies, python

#278 - build: bump numpy from 2.1.3 to 2.2.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: dependencies, python

#277 - build: bump ruff from 0.8.2 to 0.8.3

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies, python

#276 - build: bump hypothesis from 6.122.1 to 6.122.3

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies, python

#275 - build: bump numpy from 2.1.3 to 2.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 1 comment
Labels: dependencies, python

#274 - build: bump ruff from 0.8.0 to 0.8.2

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies, python

#273 - feat: add retain category functionality

Pull Request - State: closed - Opened by tzok 2 months ago

#272 - fix: add missing entity category

Pull Request - State: closed - Opened by tzok 2 months ago

#271 - feat: improve molecule filtering

Pull Request - State: closed - Opened by tzok 2 months ago

#270 - feat: improve mmcif transformer

Pull Request - State: closed - Opened by tzok 2 months ago

#269 - build: bump ruff from 0.8.0 to 0.8.1

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 2 comments
Labels: dependencies, python

#268 - build: bump pytest from 8.3.3 to 8.3.4

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies, python

#267 - build: bump hypothesis from 6.119.4 to 6.122.1

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies, python

#266 - build: bump ruff from 0.7.4 to 0.8.0

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies, python

#265 - build: bump orjson from 3.10.11 to 3.10.12

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: dependencies, python

#264 - build: bump hypothesis from 6.119.3 to 6.119.4

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies, python

#263 - feat: improve motif extraction

Pull Request - State: closed - Opened by tzok 2 months ago

#262 - fix: JSON export in annotator

Pull Request - State: closed - Opened by tzok 2 months ago

#261 - feat: use highs solver if available

Pull Request - State: closed - Opened by tzok 2 months ago

#260 - feat: improve nucleotide detection heuristic

Pull Request - State: closed - Opened by tzok 2 months ago

#259 - build: bump hypothesis from 6.118.7 to 6.119.3

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, python

#258 - build: bump hypothesis from 6.116.0 to 6.118.7

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, python

#257 - build: bump orjson from 3.10.10 to 3.10.11

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, python

#256 - build: bump numpy from 2.1.2 to 2.1.3

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, python

#255 - build: bump hypothesis from 6.115.3 to 6.116.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, python

#254 - build: bump mmcif from 0.89.0 to 0.90.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, python

#253 - build: bump hypothesis from 6.115.3 to 6.115.5

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies, python

#252 - build: bump orjson from 3.10.7 to 3.10.10

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, python

#251 - build: bump orjson from 3.10.7 to 3.10.9

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies, python

#250 - build: bump hypothesis from 6.115.0 to 6.115.3

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, python

#249 - build: bump hypothesis from 6.112.2 to 6.115.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#248 - build: bump black from 24.8.0 to 24.10.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#247 - build: bump viennarna from 2.6.4 to 2.7.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#246 - build: bump numpy from 2.1.1 to 2.1.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#245 - build: bump hypothesis from 6.112.2 to 6.112.4

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies, python

#244 - feat: resolve occupancy related clashes

Pull Request - State: closed - Opened by tzok 4 months ago

#243 - feat: support alternate locations

Pull Request - State: closed - Opened by tzok 4 months ago

#242 - build: bump hypothesis from 6.112.1 to 6.112.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#241 - build: bump pandas from 2.2.2 to 2.2.3

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#240 - build: bump pytest from 8.3.2 to 8.3.3

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, python

#239 - build: bump hypothesis from 6.112.0 to 6.112.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, python

#238 - build: bump numpy from 2.0.1 to 2.1.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, python

#237 - build: bump hypothesis from 6.111.2 to 6.112.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, python

#236 - fix: resolve conflicts in BPSEQ generation

Pull Request - State: closed - Opened by tzok 5 months ago

#235 - build: bump scipy from 1.14.0 to 1.14.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies, python

#234 - build: bump hypothesis from 6.111.1 to 6.111.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, python

#233 - build: bump numpy from 2.0.1 to 2.1.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, python

#232 - build: bump hypothesis from 6.111.0 to 6.111.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, python

#231 - fix: incorrect strand sequence

Pull Request - State: closed - Opened by tzok 6 months ago

#230 - fix: dot-bracket encoding with gaps

Pull Request - State: closed - Opened by tzok 6 months ago

#229 - feat: fill BPSEQ with gaps

Pull Request - State: closed - Opened by tzok 6 months ago

#228 - feat: improve mmCIF parsing with unnamed residues

Pull Request - State: closed - Opened by tzok 6 months ago

#227 - feat: support chain filtering

Pull Request - State: closed - Opened by tzok 6 months ago

#226 - build: bump orjson from 3.10.6 to 3.10.7

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, python

#225 - build: bump hypothesis from 6.108.8 to 6.111.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies, python

#224 - build: bump hypothesis from 6.108.5 to 6.108.8

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, python

#223 - build: bump black from 24.4.2 to 24.8.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, python

#222 - build: bump pytest from 8.3.1 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, python

#221 - build: bump hypothesis from 6.108.2 to 6.108.5

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, python

#220 - build: bump hypothesis from 6.105.1 to 6.108.2

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#219 - build: bump pytest from 8.2.2 to 8.3.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#218 - build: bump numpy from 2.0.0 to 2.0.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#217 - build: bump hypothesis from 6.105.1 to 6.108.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies, python

#216 - build: bump mmcif from 0.88.0 to 0.89.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#215 - build: bump pulp from 2.8.0 to 2.9.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#214 - build: bump hypothesis from 6.104.2 to 6.105.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#213 - build: bump orjson from 3.10.5 to 3.10.6

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#212 - feat: support CSV output

Pull Request - State: closed - Opened by tzok 7 months ago

#211 - build: bump hypothesis from 6.103.1 to 6.104.2

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#210 - build: bump scipy from 1.13.1 to 1.14.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#209 - build: bump hypothesis from 6.103.1 to 6.103.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, python

#208 - build: bump orjson from 3.10.3 to 3.10.5

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#207 - build: bump numpy from 1.26.4 to 2.0.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 2 comments
Labels: dependencies, python

#206 - fix: adjusted the start index for the "Residue name" entries (PDB)

Pull Request - State: closed - Opened by tzok 8 months ago

#205 - "math domain error" during annotator run

Issue - State: closed - Opened by DiegoBarMor 8 months ago - 3 comments

#204 - fix: adjusted the start index for the "Residue name" entries (PDB)

Pull Request - State: closed - Opened by DiegoBarMor 8 months ago - 3 comments

#203 - build: bump pytest from 8.2.1 to 8.2.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#202 - build: bump hypothesis from 6.103.0 to 6.103.1

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#201 - fix: TypeError in 8BTK caused by invalid label columns in the mmCIF

Pull Request - State: closed - Opened by tzok 8 months ago

#200 - Python exception during annotator run

Issue - State: closed - Opened by morrgant 8 months ago - 2 comments

#199 - build: bump hypothesis from 6.102.6 to 6.103.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#198 - build: bump requests from 2.32.2 to 2.32.3

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#197 - build: bump scipy from 1.13.0 to 1.13.1

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#196 - build: bump requests from 2.32.0 to 2.32.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#195 - build: bump hypothesis from 6.102.4 to 6.102.6

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#194 - build: bump requests from 2.31.0 to 2.32.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, python

#193 - build: bump hypothesis from 6.100.7 to 6.102.4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, python

#192 - build: bump pytest from 8.2.0 to 8.2.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, python

#191 - build: bump hypothesis from 6.100.4 to 6.100.7

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, python

#190 - feat: optimize all dot bracket generation

Pull Request - State: closed - Opened by tzok 9 months ago

#189 - fix: handle non pseudoknotted structures

Pull Request - State: closed - Opened by tzok 9 months ago

#188 - feat: generate all valid dot brackets

Pull Request - State: closed - Opened by tzok 9 months ago

#187 - feat: support IUPAC codes

Pull Request - State: closed - Opened by tzok 9 months ago

#186 - feat: add multi strand dot bracket

Pull Request - State: closed - Opened by tzok 9 months ago

#185 - build: bump mmcif from 0.87.0 to 0.88.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, python

#184 - build: bump hypothesis from 6.100.2 to 6.100.4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, python

#183 - build: bump orjson from 3.10.1 to 3.10.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, python