Ecosyste.ms: Issues

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GitHub / tylerjereddy/steric-conflict-resolution issues and pull requests

#24 - Degeneracies in input topologies

Issue - State: open - Opened by tylerjereddy over 8 years ago
Labels: bug

#23 - WIP: debug issues between rounds

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago - 1 comment
Labels: bug

#22 - Switched to using multiple cores for the alchemical mdrun in the work…

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago - 1 comment
Labels: enhancement

#21 - Using multiple cores

Issue - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#20 - GROMACS version / memory Issue #19

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: bug

#19 - GROMACS version / free energy "memory" issue

Issue - State: closed - Opened by tylerjereddy over 8 years ago
Labels: bug

#18 - Similar name restraint mapping

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: bug

#17 - Similar residue name mappings

Issue - State: closed - Opened by tylerjereddy over 8 years ago
Labels: bug

#16 - Enabling Restarts

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#15 - Fix merging of residues with similar names

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: bug

#14 - restarting / checkpointing

Issue - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#13 - output / error buffering

Issue - State: open - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#12 - GROMACS portability

Issue - State: open - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#11 - molname comment line in MARTINI .itp file parsing

Issue - State: open - Opened by tylerjereddy over 8 years ago
Labels: bug

#10 - Added an MDAnalysis version check to run_steric_resolution.py

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#9 - Resolve redundant restrained names

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: bug

#8 - Input Checking Residue Names

Issue - State: open - Opened by tylerjereddy over 8 years ago
Labels: bug

#7 - Added .tpr reading support

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#6 - Increased the size of the container used for the adjusted coordinates

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#5 - Clean up output files

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#4 - run_steric_resolution.py now plots cumulative results automatically

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#3 - Removed debug print statements from run_steric_resolution.py

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#2 - Adjusting coordinates now centers as well

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement

#1 - Multiresidue Support

Pull Request - State: closed - Opened by tylerjereddy over 8 years ago
Labels: enhancement