Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / turbomam/seq2ids issues and pull requests

#33 - add cogs to get curations

Issue - State: open - Opened by turbomam over 2 years ago - 1 comment

#33 - add cogs to get curations

Issue - State: open - Opened by turbomam over 2 years ago - 1 comment

#29 - Compute weighted hybrid score for rows in `part_characterization.tsv`

Issue - State: closed - Opened by sujaypatil96 over 2 years ago
Labels: enhancement

#29 - Compute weighted hybrid score for rows in `part_characterization.tsv`

Issue - State: closed - Opened by sujaypatil96 over 2 years ago
Labels: enhancement

#28 - Log whole duplicates from the database

Issue - State: closed - Opened by sujaypatil96 over 2 years ago
Labels: good first issue

#28 - Log whole duplicates from the database

Issue - State: closed - Opened by sujaypatil96 over 2 years ago
Labels: good first issue

#27 - Convert parts_best_match.py into a click CLI application

Issue - State: closed - Opened by sujaypatil96 over 2 years ago
Labels: good first issue

#27 - Convert parts_best_match.py into a click CLI application

Issue - State: closed - Opened by sujaypatil96 over 2 years ago
Labels: good first issue

#26 - Weighted hybrid score, click cli and improved logging

Pull Request - State: closed - Opened by sujaypatil96 over 2 years ago
Labels: enhancement

#26 - Weighted hybrid score, click cli and improved logging

Pull Request - State: closed - Opened by sujaypatil96 over 2 years ago
Labels: enhancement

#24 - Filter out best blast result from blastx runs against Uniprot

Pull Request - State: closed - Opened by sujaypatil96 over 2 years ago - 2 comments

#24 - Filter out best blast result from blastx runs against Uniprot

Pull Request - State: closed - Opened by sujaypatil96 over 2 years ago - 2 comments

#23 - Issue 22 blast db

Pull Request - State: closed - Opened by turbomam over 2 years ago

#23 - Issue 22 blast db

Pull Request - State: closed - Opened by turbomam over 2 years ago

#22 - add blast db column

Issue - State: closed - Opened by turbomam over 2 years ago

#22 - add blast db column

Issue - State: closed - Opened by turbomam over 2 years ago

#21 - bash script to dump pgsql table as sqlite

Pull Request - State: closed - Opened by sujaypatil96 over 2 years ago

#21 - bash script to dump pgsql table as sqlite

Pull Request - State: closed - Opened by sujaypatil96 over 2 years ago

#20 - related repositories

Issue - State: open - Opened by turbomam over 2 years ago - 2 comments

#20 - related repositories

Issue - State: open - Opened by turbomam over 2 years ago - 2 comments

#19 - parts table notes

Issue - State: open - Opened by turbomam over 2 years ago

#19 - parts table notes

Issue - State: open - Opened by turbomam over 2 years ago

#18 - Which Uniprot annotations do we want to keep?

Issue - State: open - Opened by turbomam over 2 years ago - 1 comment

#18 - Which Uniprot annotations do we want to keep?

Issue - State: open - Opened by turbomam over 2 years ago - 1 comment

#17 - Add support for higher organisms

Issue - State: open - Opened by turbomam over 2 years ago

#17 - Add support for higher organisms

Issue - State: open - Opened by turbomam over 2 years ago

#16 - Add support for characterizing deletions

Issue - State: open - Opened by turbomam over 2 years ago

#16 - Add support for characterizing deletions

Issue - State: open - Opened by turbomam over 2 years ago

#15 - resources

Issue - State: open - Opened by turbomam over 2 years ago

#15 - resources

Issue - State: open - Opened by turbomam over 2 years ago

#13 - Add support for identifying non-coding modifications

Issue - State: open - Opened by turbomam over 2 years ago

#13 - Add support for identifying non-coding modifications

Issue - State: open - Opened by turbomam over 2 years ago

#11 - Are we actually BLASTing against SwissProt or Uniprot?

Issue - State: open - Opened by turbomam over 2 years ago

#11 - Are we actually BLASTing against SwissProt or Uniprot?

Issue - State: open - Opened by turbomam over 2 years ago

#10 - Not generally using e-values to filter BLAST hits

Issue - State: open - Opened by turbomam over 2 years ago

#10 - Not generally using e-values to filter BLAST hits

Issue - State: open - Opened by turbomam over 2 years ago

#8 - Pick the one best Uniprot BLAST hit for protein coding parts

Issue - State: open - Opened by turbomam over 2 years ago - 3 comments

#8 - Pick the one best Uniprot BLAST hit for protein coding parts

Issue - State: open - Opened by turbomam over 2 years ago - 3 comments

#7 - Postgres structure and notes (initial)

Issue - State: open - Opened by turbomam over 2 years ago

#7 - Postgres structure and notes (initial)

Issue - State: open - Opened by turbomam over 2 years ago

#5 - better requirements documentation required

Issue - State: open - Opened by turbomam over 2 years ago

#5 - better requirements documentation required

Issue - State: open - Opened by turbomam over 2 years ago

#4 - inconsistent column typing in SQLite and queries and scripts

Issue - State: open - Opened by turbomam over 2 years ago

#4 - inconsistent column typing in SQLite and queries and scripts

Issue - State: open - Opened by turbomam over 2 years ago

#2 - BLAST output doesn't have any unique key in SQLite yet

Issue - State: open - Opened by turbomam over 2 years ago

#1 - changes to blast output (or columns to join)

Issue - State: open - Opened by turbomam over 2 years ago