Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / turbomam/mixs-subset-examples-first issues and pull requests
#112 - Update mixs_combined_slotdefs.tsv
Pull Request -
State: closed - Opened by only1chunts over 1 year ago
#111 - proj slug in menu json
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#110 - Delete .~lock.hand_stacked_conflicts.csv#
Pull Request -
State: open - Opened by turbomam over 1 year ago
#109 - Update README.md: closed schema
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#108 - working on readme
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#107 - local dh ok
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#106 - prepare for 2023-05-02... inc bundled DH?
Issue -
State: open - Opened by turbomam over 1 year ago
#105 - fewer Database slots = working data classes
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#104 - Provided plant examples
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#103 - period pattern needs work
Issue -
State: open - Opened by turbomam over 1 year ago
- 3 comments
#102 - mims_plant_associated_set validation errors against provided examples
Issue -
State: open - Opened by turbomam over 1 year ago
#101 - added plant example with regimens
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#100 - started MigsBA examples
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#99 - jsonschema FutureWarning: Possible nested set
Issue -
State: open - Opened by turbomam over 1 year ago
#98 - why would a static `bp` units suffix be included in estimated_size?
Issue -
State: open - Opened by turbomam over 1 year ago
#97 - start dealing with temporal Value syntaxes (date, timestamp...)
Issue -
State: open - Opened by turbomam over 1 year ago
- 1 comment
#96 - host_spec_range has a Value syntax of integer... why wouldn't it be a curie?
Issue -
State: open - Opened by turbomam over 1 year ago
#95 - MimsWater valid and invalid examples
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#94 - combine oxy_stat_samp and rel_to_oxygen slots (or at least enums?)
Issue -
State: open - Opened by turbomam over 1 year ago
#93 - reintroduce "multivalued" string values
Issue -
State: open - Opened by turbomam over 1 year ago
#92 - reintroduce multi-valued enums
Issue -
State: open - Opened by turbomam over 1 year ago
#91 - TILLAGE_ENUM gets converted to TILLAGEENUM in generated docs pages
Issue -
State: open - Opened by turbomam over 1 year ago
#90 - initial invalid examples for mimssoil
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#89 - are some slots curies or uris?
Issue -
State: open - Opened by turbomam over 1 year ago
#88 - patterns and enums for MimsSoil
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#87 - apply semantic ordering of permissible values
Issue -
State: open - Opened by turbomam over 1 year ago
#86 - what's the difference between {term} and {text} (or {free_text} in MIxS Value syntax?
Issue -
State: open - Opened by turbomam over 1 year ago
- 1 comment
#85 - assign meanings to permissible values
Issue -
State: open - Opened by turbomam over 1 year ago
#84 - replace URL unsafe characters in PVs
Issue -
State: open - Opened by turbomam over 1 year ago
#83 - move examples in CUR_LAND_USE_ENUM PVs to some other slot
Issue -
State: open - Opened by turbomam over 1 year ago
#82 - quoted classes in Database slots
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#81 - Excel titles with more than 31 characters
Issue -
State: open - Opened by turbomam over 1 year ago
#80 - python data classes don't load
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#79 - `make testdoc` "not found in the documentation files" warnings
Issue -
State: closed - Opened by turbomam over 1 year ago
#78 - make test-examples -> 'Agriculture' is not defined
Issue -
State: open - Opened by turbomam over 1 year ago
- 2 comments
#77 - global definitions of Database slots like mims_soil_set have incorrect, implicit range of string
Issue -
State: open - Opened by turbomam over 1 year ago
- 2 comments
#76 - how is 16s_recover leaking back into schema?
Issue -
State: closed - Opened by turbomam over 1 year ago
#75 - generate json representation of schema for DH
Issue -
State: closed - Opened by turbomam over 1 year ago
#74 - use and improve custom mixs jinja
Issue -
State: open - Opened by turbomam over 1 year ago
#73 - make sure that run-linikml-examples works for *validation* and *conversion*
Issue -
State: open - Opened by turbomam over 1 year ago
- 1 comment
#72 - Make sure instantiation tests work
Issue -
State: open - Opened by turbomam over 1 year ago
#71 - what's slow, broken, or needing of customization?
Issue -
State: open - Opened by turbomam over 1 year ago
#70 - show conversion of data to other formats
Issue -
State: open - Opened by turbomam over 1 year ago
- 1 comment
#69 - maybe didn't fetch from main?
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#68 - added identifier or alises?
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#67 - try generating a DataHarmonizer interface
Issue -
State: open - Opened by turbomam over 1 year ago
- 3 comments
#66 - what artifacts do we want to include in the gen-project configuration?
Issue -
State: closed - Opened by turbomam over 1 year ago
- 3 comments
#65 - MIXS:0000091, "associated resource" has whitespace in its name
Issue -
State: open - Opened by turbomam over 1 year ago
- 2 comments
#64 - temporarily remove slots with digit-first names
Issue -
State: open - Opened by turbomam over 1 year ago
#63 - configured for gen-project
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#62 - add a primary key
Issue -
State: open - Opened by turbomam over 1 year ago
- 1 comment
#61 - add rows from data/duplicated_scns_by_id.tsv back into...
Issue -
State: open - Opened by turbomam over 1 year ago
#60 - temporary occurrence annotation
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#59 - oops forgot to check these in
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#58 - temporarily replace occurrence column with an annotation
Issue -
State: closed - Opened by turbomam over 1 year ago
#57 - start working on enums
Issue -
State: open - Opened by turbomam over 1 year ago
#56 - add structured pattern settings
Issue -
State: open - Opened by turbomam over 1 year ago
#55 - disable multivalued assertions and replace with multivalued-tolerant validation patterns
Issue -
State: open - Opened by turbomam over 1 year ago
#54 - move files in data/ and example/ into cookiecutter expected paths
Issue -
State: open - Opened by turbomam over 1 year ago
#53 - database class defined dynamically
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#52 - env packs reqs incl in sheets2linkml
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#51 - env packages usage (mostly annotations)
Issue -
State: open - Opened by turbomam over 1 year ago
#50 - env packages requirements
Issue -
State: closed - Opened by turbomam over 1 year ago
#49 - initial table of env pack terms reqs
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#48 - Make a checklist oriented usage sheet?
Issue -
State: open - Opened by turbomam over 1 year ago
#47 - Add env package requirements sheet. Include usage and or annotations?
Issue -
State: open - Opened by turbomam over 1 year ago
- 3 comments
#46 - catalog the manually created or curated files in /data
Issue -
State: open - Opened by turbomam over 1 year ago
#45 - Automate creation of Database slots for each class
Issue -
State: closed - Opened by turbomam over 1 year ago
#44 - See alsos & examples
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#43 - eliminate non-ASCII characters
Issue -
State: open - Opened by turbomam over 1 year ago
#42 - check validity of URLs; pick a preferred CURIe resolver
Issue -
State: open - Opened by turbomam over 1 year ago
#41 - normalize tokens in structured comment names
Issue -
State: open - Opened by turbomam over 1 year ago
#40 - see_also column in schemasheets doesn't handle internal_separator: “|”
Issue -
State: closed - Opened by turbomam over 1 year ago
#39 - unprotected/unquoted structured_pattern values in schemasheets error out
Issue -
State: closed - Opened by turbomam over 1 year ago
#38 - minimum_value and maximum_value values in schemasheets are serialized as strings
Issue -
State: open - Opened by turbomam over 1 year ago
#37 - what values are allowed for linkml booleans?
Issue -
State: open - Opened by turbomam over 1 year ago
#36 - removed old and package dirs
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#35 - validated SoilMims data
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#34 - start destructively removing content from mixs_combined_all_modified.tsv if also present in a more structured column
Issue -
State: closed - Opened by turbomam over 1 year ago
#33 - cleaned up conflicting Expected values
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#32 - examples cleanup
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#31 - Occurrence cleanup
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#30 - no discrepancies in id, scn or def
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#29 - improvements to find_contradictions
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#28 - add "see also" and "NCBI acknowledged" to find_contradictions output
Issue -
State: closed - Opened by turbomam over 1 year ago
#27 - intuitive directory structure; consistent concept naming; consistent score reporting
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#26 - lets get professional
Issue -
State: open - Opened by turbomam over 1 year ago
#25 - provide both raw and scaled contradiction scores in pairwise and summary tables
Issue -
State: closed - Opened by turbomam over 1 year ago
#24 - choose a better directory structure esp assets and keep
Issue -
State: closed - Opened by turbomam over 1 year ago
#23 - standardize language like contradictions, worst offenders, multi-pairings...
Issue -
State: open - Opened by turbomam over 1 year ago
#22 - Slotdef doc link
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#21 - presentation typos
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#20 - Update README.md
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#19 - Docs aren't building because of unclean tree
Issue -
State: open - Opened by turbomam over 1 year ago
- 2 comments
#18 - presentation.md = curated log
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#17 - start collecting log of actions and results to included in presentation
Issue -
State: closed - Opened by turbomam over 1 year ago
#16 - #15 worst offenders report target
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#15 - update project.Makefile for worst offender reports
Issue -
State: closed - Opened by turbomam over 1 year ago
#14 - detailed contradiction report
Pull Request -
State: closed - Opened by turbomam over 1 year ago
#13 - add raw contradiction by environmental package pair report to worst_offender.py
Issue -
State: closed - Opened by turbomam over 1 year ago
- 1 comment