Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / tudo-r/BatchJobs issues and pull requests

#132 - Maintenance Release

Pull Request - State: closed - Opened by mllg over 2 years ago

#131 - strings.as.factors detection

Pull Request - State: closed - Opened by jakob-r about 4 years ago - 1 comment

#130 - Passing ssh.cmd to makeSSHWorker using bash script

Issue - State: open - Opened by Shruthi-Patil about 5 years ago

#129 - Custom SLURM execution commands?

Issue - State: open - Opened by jgrn307 about 6 years ago

#128 - conda env activation in template?

Issue - State: closed - Opened by nick-youngblut about 6 years ago - 1 comment

#127 - migration of legacy registries

Issue - State: open - Opened by vjcitn over 6 years ago

#126 - Reason for sudden updates + release on this deprecate package?

Issue - State: closed - Opened by HenrikBengtsson over 6 years ago - 5 comments

#125 - Submission failure with multicore cluster functions

Issue - State: open - Opened by cfhammill about 7 years ago

#124 - Warnings with DBI_0.5-1

Issue - State: open - Opened by cfhammill over 7 years ago - 5 comments

#123 - VIGNETTE: BatchJobs -> batchtools migration info

Issue - State: closed - Opened by HenrikBengtsson over 7 years ago - 1 comment

#121 - job.delay on torque clusters

Issue - State: closed - Opened by sorhawell over 7 years ago - 3 comments

#119 - there is no package called ‘checkmate’

Issue - State: closed - Opened by DaveDixon almost 8 years ago

#116 - LSF submitJobs issue

Issue - State: closed - Opened by ashokrags about 8 years ago - 3 comments

#115 - Additional parameters for SLURM to work correctly on LRZ cluster

Pull Request - State: open - Opened by ja-thomas about 8 years ago - 1 comment

#114 - WISH: snow adapter

Issue - State: closed - Opened by krlmlr over 8 years ago - 2 comments

#113 - WISH: makeClusterFunctionsTorque("<brew string>")

Issue - State: open - Opened by HenrikBengtsson over 8 years ago - 2 comments
Labels: enhancement

#112 - Receive negative running time

Issue - State: open - Opened by philippstats over 8 years ago

#111 - Explain LSF template

Pull Request - State: open - Opened by krlmlr over 8 years ago

#109 - Update README URLs based on HTTP redirects

Pull Request - State: closed - Opened by ReadmeCritic over 8 years ago

#108 - Use SVG Travis badge in README

Pull Request - State: closed - Opened by gaborcsardi over 8 years ago - 1 comment

#107 - Results from BatchJobs are what they should be *-1 + job number?

Issue - State: closed - Opened by rosemm over 8 years ago - 4 comments

#106 - Locked database

Issue - State: open - Opened by kerschke over 8 years ago - 1 comment

#105 - waitForExpiredAndRestart()

Issue - State: open - Opened by jakob-r over 8 years ago

#104 - order of package loading

Issue - State: closed - Opened by ringprince almost 9 years ago - 1 comment

#103 - Exported variable starting with a period are not loaded

Issue - State: closed - Opened by HenrikBengtsson almost 9 years ago - 2 comments
Labels: bug

#102 - Change default for max.load

Issue - State: closed - Opened by krlmlr almost 9 years ago - 1 comment

#101 - LSF - cat: write error: Input/output error

Issue - State: closed - Opened by zslastman almost 9 years ago - 2 comments

#100 - Batchjobs loses track of running jobs on SLURM

Issue - State: open - Opened by mshvartsman almost 9 years ago - 3 comments
Labels: bug

#99 - stuck at 0% in multicore on OSX

Issue - State: closed - Opened by mshvartsman almost 9 years ago - 3 comments

#98 - allow passing arguments down to source() from loadConfig()

Pull Request - State: open - Opened by mshvartsman almost 9 years ago - 1 comment

#97 - gc() introduces a high overhead

Issue - State: closed - Opened by mllg almost 9 years ago
Labels: enhancement

#96 - Buffer overflow error for large number of jobs

Issue - State: open - Opened by mschubert almost 9 years ago - 10 comments

#95 - loadRegistry read only mode

Issue - State: closed - Opened by jakob-r almost 9 years ago - 1 comment

#94 - Release updated version to CRAN

Issue - State: closed - Opened by gmbecker about 9 years ago - 6 comments

#93 - batchExport() and objects with non-standard names

Issue - State: open - Opened by HenrikBengtsson about 9 years ago - 2 comments
Labels: enhancement

#92 - SUGGESTION: support the "ppn" parameter

Issue - State: open - Opened by jgrn307 about 9 years ago - 2 comments

#91 - DRMAA support for BatchJobs

Issue - State: open - Opened by seandavi about 9 years ago - 1 comment

#90 - Send email when last job is done vs. last submitted job is done

Issue - State: open - Opened by renozao about 9 years ago - 2 comments

#88 - add missing.value argument to loadResults. For PR

Pull Request - State: closed - Opened by gmbecker about 9 years ago - 6 comments

#87 - Feature/sendmail

Pull Request - State: open - Opened by renozao about 9 years ago - 3 comments

#86 - Shows Torque configuration but still getting errors

Issue - State: closed - Opened by llucas1985 about 9 years ago - 4 comments

#85 - SSH banner causes submitJobs to fail?

Issue - State: open - Opened by alexvorobiev about 9 years ago - 1 comment
Labels: enhancement

#84 - Sensible defaults for `submitJobs()`

Issue - State: open - Opened by larskotthoff over 9 years ago - 10 comments

#83 - Add support to submit Rmpi job on OpenLava

Pull Request - State: open - Opened by ghost over 9 years ago - 1 comment

#82 - use BatchJobs to submit Rmpi job

Issue - State: open - Opened by ghost over 9 years ago

#81 - Add openlava example

Pull Request - State: closed - Opened by ghost over 9 years ago - 1 comment

#80 - Make cluster submit script template more flexible

Issue - State: open - Opened by renozao over 9 years ago - 2 comments

#79 - Add OpenLava support as backend job scheduler

Pull Request - State: closed - Opened by ghost over 9 years ago - 6 comments

#78 - Feature/dev packages

Pull Request - State: open - Opened by renozao over 9 years ago

#76 - prospects for something like batchMutate?

Issue - State: open - Opened by vjcitn over 9 years ago - 2 comments

#75 - [LSF] log for jobs within jobarray

Issue - State: open - Opened by ringprince over 9 years ago - 4 comments
Labels: enhancement

#74 - Full support for R Array Jobs in SGE ?

Issue - State: open - Opened by michaelmayer2 over 9 years ago - 3 comments

#73 - Get error in RStudio GUI when the code works fine with R CLI

Issue - State: closed - Opened by ghost over 9 years ago - 4 comments

#72 - SUGGESTION: batchEvalQ()

Issue - State: open - Opened by HenrikBengtsson over 9 years ago - 2 comments
Labels: enhancement

#71 - Is a shared file system essential for all types of cluster functions?

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 3 comments
Labels: question

#70 - Multicore: Job status briefly "expired" before becoming "done"

Issue - State: open - Opened by HenrikBengtsson over 9 years ago - 15 comments

#69 - SUGGESTION: Git Workflow

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 1 comment
Labels: enhancement

#68 - Does 'BatchJobs' still have to be attached, or could it be enough it's loaded?

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 17 comments
Labels: enhancement

#67 - SUGGESTION: Make ncpus=detectCores()-1 the default for makeClusterFunctionsMulticore()

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 3 comments
Labels: enhancement

#66 - Method to delete registry, e.g. removeRegistry(reg)?

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 6 comments
Labels: enhancement

#65 - Directory '...' does not seem to be empty (on Windows)

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 3 comments

#64 - short hand function for restarting BatchJobs Registry

Issue - State: closed - Opened by jakob-r over 9 years ago - 3 comments
Labels: enhancement

#63 - extend loadExports with argument that define files to load

Pull Request - State: closed - Opened by surmann over 9 years ago

#62 - max.jobs limited to ncpus

Issue - State: closed - Opened by larskotthoff over 9 years ago - 9 comments

#61 - time.running and time.done are not available for jobs with errors

Issue - State: closed - Opened by larskotthoff over 9 years ago - 3 comments

#60 - loadRegistry() with modified working directory

Issue - State: closed - Opened by surmann over 9 years ago - 1 comment
Labels: wontfix

#59 - showLog() on Windows does not work

Issue - State: closed - Opened by surmann over 9 years ago - 1 comment

#58 - registry sync error -- database is locked

Issue - State: closed - Opened by vjcitn over 9 years ago - 42 comments

#57 - Different resources for individual jobs

Issue - State: open - Opened by MalgorzataOles over 9 years ago - 8 comments

#56 - Chunks as array jobs with SGE problem

Issue - State: closed - Opened by frankeriksson over 9 years ago - 2 comments

#55 - SUGGESTION: Making staged.queries=TRUE the default

Issue - State: closed - Opened by HenrikBengtsson over 9 years ago - 3 comments
Labels: enhancement

#54 - waitForJobs in conjunction with array jobs

Issue - State: open - Opened by dagola over 9 years ago - 7 comments

#53 - Cast string "array.id" to integer, makeClusterFunctionTorque with SSH

Pull Request - State: open - Opened by dagola over 9 years ago - 9 comments

#52 - dbBeginTransaction deprecated in RSQLite 1.0.0

Issue - State: closed - Opened by vjcitn almost 10 years ago - 4 comments

#51 - batchExpandGrid should store the grid

Issue - State: closed - Opened by berndbischl almost 10 years ago - 2 comments

#49 - Display memory statistics in getJobInfo() and showStatus()

Issue - State: closed - Opened by surmann almost 10 years ago - 1 comment

#48 - Cannot run simple SGE example

Issue - State: closed - Opened by jtpoirier almost 10 years ago - 11 comments

#47 - Multicore mode on multiple machines in parallel

Issue - State: open - Opened by berndbischl almost 10 years ago
Labels: enhancement

#46 - isFileFromRooot

Issue - State: closed - Opened by berndbischl almost 10 years ago - 6 comments

#45 - check.posix

Issue - State: closed - Opened by berndbischl almost 10 years ago - 1 comment

#44 - SSH mode: bashrc

Issue - State: closed - Opened by berndbischl almost 10 years ago - 1 comment

#42 - Debian Med autotest problem

Issue - State: closed - Opened by berndbischl about 10 years ago - 2 comments

#39 - maybe we want to log the max mem consumption after a job completes in the DB

Issue - State: closed - Opened by berndbischl about 10 years ago - 1 comment

#36 - BatchJobs does not check if the arguments provided to a function are sufficient

Issue - State: open - Opened by mschubert about 10 years ago - 2 comments
Labels: enhancement

#32 - add method to export object to slaves

Issue - State: closed - Opened by berndbischl over 10 years ago
Labels: enhancement

#30 - Install slurm with arrayjobs on test system

Issue - State: closed - Opened by berndbischl over 10 years ago - 1 comment

#28 - Always use R CMD BATCH in cluster functions

Issue - State: closed - Opened by berndbischl over 10 years ago - 4 comments

#18 - Support for other DBMS

Issue - State: closed - Opened by mllg over 10 years ago - 9 comments
Labels: enhancement

#4 - Graph of dependent jobs?

Issue - State: open - Opened by mllg over 10 years ago - 9 comments
Labels: enhancement