Ecosyste.ms: Issues
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GitHub / tudo-r/BatchJobs issues and pull requests
#132 - Maintenance Release
Pull Request -
State: closed - Opened by mllg over 2 years ago
#131 - strings.as.factors detection
Pull Request -
State: closed - Opened by jakob-r about 4 years ago
- 1 comment
#130 - Passing ssh.cmd to makeSSHWorker using bash script
Issue -
State: open - Opened by Shruthi-Patil about 5 years ago
#129 - Custom SLURM execution commands?
Issue -
State: open - Opened by jgrn307 about 6 years ago
#128 - conda env activation in template?
Issue -
State: closed - Opened by nick-youngblut about 6 years ago
- 1 comment
#127 - migration of legacy registries
Issue -
State: open - Opened by vjcitn over 6 years ago
#126 - Reason for sudden updates + release on this deprecate package?
Issue -
State: closed - Opened by HenrikBengtsson over 6 years ago
- 5 comments
#125 - Submission failure with multicore cluster functions
Issue -
State: open - Opened by cfhammill about 7 years ago
#124 - Warnings with DBI_0.5-1
Issue -
State: open - Opened by cfhammill over 7 years ago
- 5 comments
#123 - VIGNETTE: BatchJobs -> batchtools migration info
Issue -
State: closed - Opened by HenrikBengtsson over 7 years ago
- 1 comment
#122 - Submitting many jobs generates error qsub: Invalid credential
Issue -
State: open - Opened by renozao over 7 years ago
#121 - job.delay on torque clusters
Issue -
State: closed - Opened by sorhawell over 7 years ago
- 3 comments
#120 - Multicore frozen at 0% in the presence of many system R processes
Issue -
State: open - Opened by cfhammill almost 8 years ago
#119 - there is no package called ‘checkmate’
Issue -
State: closed - Opened by DaveDixon almost 8 years ago
#118 - FYI: Multicore BatchJobs does not work on Solaris Unix (`ps -o ucomm` not supported)
Issue -
State: open - Opened by HenrikBengtsson about 8 years ago
#117 - OS X: makeClusterFunctionsMulticore() gives Error in if (worker$status$n.jobs >= worker$max.jobs) return("J"): missing value where TRUE/FALSE needed
Issue -
State: open - Opened by HenrikBengtsson about 8 years ago
- 2 comments
#116 - LSF submitJobs issue
Issue -
State: closed - Opened by ashokrags about 8 years ago
- 3 comments
#115 - Additional parameters for SLURM to work correctly on LRZ cluster
Pull Request -
State: open - Opened by ja-thomas about 8 years ago
- 1 comment
#114 - WISH: snow adapter
Issue -
State: closed - Opened by krlmlr over 8 years ago
- 2 comments
#113 - WISH: makeClusterFunctionsTorque("<brew string>")
Issue -
State: open - Opened by HenrikBengtsson over 8 years ago
- 2 comments
Labels: enhancement
#112 - Receive negative running time
Issue -
State: open - Opened by philippstats over 8 years ago
#111 - Explain LSF template
Pull Request -
State: open - Opened by krlmlr over 8 years ago
#110 - WISH: Add option for specifying architecture in makeClusterFunctionsLocal()
Issue -
State: open - Opened by HenrikBengtsson over 8 years ago
#109 - Update README URLs based on HTTP redirects
Pull Request -
State: closed - Opened by ReadmeCritic over 8 years ago
#108 - Use SVG Travis badge in README
Pull Request -
State: closed - Opened by gaborcsardi over 8 years ago
- 1 comment
#107 - Results from BatchJobs are what they should be *-1 + job number?
Issue -
State: closed - Opened by rosemm over 8 years ago
- 4 comments
#106 - Locked database
Issue -
State: open - Opened by kerschke over 8 years ago
- 1 comment
#105 - waitForExpiredAndRestart()
Issue -
State: open - Opened by jakob-r over 8 years ago
#104 - order of package loading
Issue -
State: closed - Opened by ringprince almost 9 years ago
- 1 comment
#103 - Exported variable starting with a period are not loaded
Issue -
State: closed - Opened by HenrikBengtsson almost 9 years ago
- 2 comments
Labels: bug
#102 - Change default for max.load
Issue -
State: closed - Opened by krlmlr almost 9 years ago
- 1 comment
#101 - LSF - cat: write error: Input/output error
Issue -
State: closed - Opened by zslastman almost 9 years ago
- 2 comments
#100 - Batchjobs loses track of running jobs on SLURM
Issue -
State: open - Opened by mshvartsman almost 9 years ago
- 3 comments
Labels: bug
#99 - stuck at 0% in multicore on OSX
Issue -
State: closed - Opened by mshvartsman almost 9 years ago
- 3 comments
#98 - allow passing arguments down to source() from loadConfig()
Pull Request -
State: open - Opened by mshvartsman almost 9 years ago
- 1 comment
#97 - gc() introduces a high overhead
Issue -
State: closed - Opened by mllg almost 9 years ago
Labels: enhancement
#96 - Buffer overflow error for large number of jobs
Issue -
State: open - Opened by mschubert almost 9 years ago
- 10 comments
#95 - loadRegistry read only mode
Issue -
State: closed - Opened by jakob-r almost 9 years ago
- 1 comment
#94 - Release updated version to CRAN
Issue -
State: closed - Opened by gmbecker about 9 years ago
- 6 comments
#93 - batchExport() and objects with non-standard names
Issue -
State: open - Opened by HenrikBengtsson about 9 years ago
- 2 comments
Labels: enhancement
#92 - SUGGESTION: support the "ppn" parameter
Issue -
State: open - Opened by jgrn307 about 9 years ago
- 2 comments
#91 - DRMAA support for BatchJobs
Issue -
State: open - Opened by seandavi about 9 years ago
- 1 comment
#90 - Send email when last job is done vs. last submitted job is done
Issue -
State: open - Opened by renozao about 9 years ago
- 2 comments
#89 - Interface: loadResults: missing.ok and missing.value are inconsistent with reduceResults
Issue -
State: closed - Opened by berndbischl about 9 years ago
#88 - add missing.value argument to loadResults. For PR
Pull Request -
State: closed - Opened by gmbecker about 9 years ago
- 6 comments
#87 - Feature/sendmail
Pull Request -
State: open - Opened by renozao about 9 years ago
- 3 comments
#86 - Shows Torque configuration but still getting errors
Issue -
State: closed - Opened by llucas1985 about 9 years ago
- 4 comments
#85 - SSH banner causes submitJobs to fail?
Issue -
State: open - Opened by alexvorobiev about 9 years ago
- 1 comment
Labels: enhancement
#84 - Sensible defaults for `submitJobs()`
Issue -
State: open - Opened by larskotthoff over 9 years ago
- 10 comments
#83 - Add support to submit Rmpi job on OpenLava
Pull Request -
State: open - Opened by ghost over 9 years ago
- 1 comment
#82 - use BatchJobs to submit Rmpi job
Issue -
State: open - Opened by ghost over 9 years ago
#81 - Add openlava example
Pull Request -
State: closed - Opened by ghost over 9 years ago
- 1 comment
#80 - Make cluster submit script template more flexible
Issue -
State: open - Opened by renozao over 9 years ago
- 2 comments
#79 - Add OpenLava support as backend job scheduler
Pull Request -
State: closed - Opened by ghost over 9 years ago
- 6 comments
#78 - Feature/dev packages
Pull Request -
State: open - Opened by renozao over 9 years ago
#77 - Support loading development packages in makeExperimentRegistry
Issue -
State: open - Opened by renozao over 9 years ago
#76 - prospects for something like batchMutate?
Issue -
State: open - Opened by vjcitn over 9 years ago
- 2 comments
#75 - [LSF] log for jobs within jobarray
Issue -
State: open - Opened by ringprince over 9 years ago
- 4 comments
Labels: enhancement
#74 - Full support for R Array Jobs in SGE ?
Issue -
State: open - Opened by michaelmayer2 over 9 years ago
- 3 comments
#73 - Get error in RStudio GUI when the code works fine with R CLI
Issue -
State: closed - Opened by ghost over 9 years ago
- 4 comments
#72 - SUGGESTION: batchEvalQ()
Issue -
State: open - Opened by HenrikBengtsson over 9 years ago
- 2 comments
Labels: enhancement
#71 - Is a shared file system essential for all types of cluster functions?
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 3 comments
Labels: question
#70 - Multicore: Job status briefly "expired" before becoming "done"
Issue -
State: open - Opened by HenrikBengtsson over 9 years ago
- 15 comments
#69 - SUGGESTION: Git Workflow
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 1 comment
Labels: enhancement
#68 - Does 'BatchJobs' still have to be attached, or could it be enough it's loaded?
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 17 comments
Labels: enhancement
#67 - SUGGESTION: Make ncpus=detectCores()-1 the default for makeClusterFunctionsMulticore()
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 3 comments
Labels: enhancement
#66 - Method to delete registry, e.g. removeRegistry(reg)?
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 6 comments
Labels: enhancement
#65 - Directory '...' does not seem to be empty (on Windows)
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 3 comments
#64 - short hand function for restarting BatchJobs Registry
Issue -
State: closed - Opened by jakob-r over 9 years ago
- 3 comments
Labels: enhancement
#63 - extend loadExports with argument that define files to load
Pull Request -
State: closed - Opened by surmann over 9 years ago
#62 - max.jobs limited to ncpus
Issue -
State: closed - Opened by larskotthoff over 9 years ago
- 9 comments
#61 - time.running and time.done are not available for jobs with errors
Issue -
State: closed - Opened by larskotthoff over 9 years ago
- 3 comments
#60 - loadRegistry() with modified working directory
Issue -
State: closed - Opened by surmann over 9 years ago
- 1 comment
Labels: wontfix
#59 - showLog() on Windows does not work
Issue -
State: closed - Opened by surmann over 9 years ago
- 1 comment
#58 - registry sync error -- database is locked
Issue -
State: closed - Opened by vjcitn over 9 years ago
- 42 comments
#57 - Different resources for individual jobs
Issue -
State: open - Opened by MalgorzataOles over 9 years ago
- 8 comments
#56 - Chunks as array jobs with SGE problem
Issue -
State: closed - Opened by frankeriksson over 9 years ago
- 2 comments
#55 - SUGGESTION: Making staged.queries=TRUE the default
Issue -
State: closed - Opened by HenrikBengtsson over 9 years ago
- 3 comments
Labels: enhancement
#54 - waitForJobs in conjunction with array jobs
Issue -
State: open - Opened by dagola over 9 years ago
- 7 comments
#53 - Cast string "array.id" to integer, makeClusterFunctionTorque with SSH
Pull Request -
State: open - Opened by dagola over 9 years ago
- 9 comments
#52 - dbBeginTransaction deprecated in RSQLite 1.0.0
Issue -
State: closed - Opened by vjcitn almost 10 years ago
- 4 comments
#51 - batchExpandGrid should store the grid
Issue -
State: closed - Opened by berndbischl almost 10 years ago
- 2 comments
#50 - dbDoQuery() occasionally gives "RS_SQLite_fetch: failed first step: attempt to write a readonly database"
Issue -
State: closed - Opened by HenrikBengtsson almost 10 years ago
- 4 comments
#49 - Display memory statistics in getJobInfo() and showStatus()
Issue -
State: closed - Opened by surmann almost 10 years ago
- 1 comment
#48 - Cannot run simple SGE example
Issue -
State: closed - Opened by jtpoirier almost 10 years ago
- 11 comments
#47 - Multicore mode on multiple machines in parallel
Issue -
State: open - Opened by berndbischl almost 10 years ago
Labels: enhancement
#46 - isFileFromRooot
Issue -
State: closed - Opened by berndbischl almost 10 years ago
- 6 comments
#45 - check.posix
Issue -
State: closed - Opened by berndbischl almost 10 years ago
- 1 comment
#44 - SSH mode: bashrc
Issue -
State: closed - Opened by berndbischl almost 10 years ago
- 1 comment
#42 - Debian Med autotest problem
Issue -
State: closed - Opened by berndbischl about 10 years ago
- 2 comments
#39 - maybe we want to log the max mem consumption after a job completes in the DB
Issue -
State: closed - Opened by berndbischl about 10 years ago
- 1 comment
#36 - BatchJobs does not check if the arguments provided to a function are sufficient
Issue -
State: open - Opened by mschubert about 10 years ago
- 2 comments
Labels: enhancement
#32 - add method to export object to slaves
Issue -
State: closed - Opened by berndbischl over 10 years ago
Labels: enhancement
#30 - Install slurm with arrayjobs on test system
Issue -
State: closed - Opened by berndbischl over 10 years ago
- 1 comment
#28 - Always use R CMD BATCH in cluster functions
Issue -
State: closed - Opened by berndbischl over 10 years ago
- 4 comments
#18 - Support for other DBMS
Issue -
State: closed - Opened by mllg over 10 years ago
- 9 comments
Labels: enhancement
#14 - Html help: When jobs are run in interactive mode for this, too much crappy output is produced
Issue -
State: closed - Opened by berndbischl over 10 years ago
- 2 comments
#12 - batchMapQuick: arg 'inds': the semantics of inds are quite unclear when combined with chunking
Issue -
State: closed - Opened by berndbischl over 10 years ago
- 3 comments
#11 - Explain array jobs mode somewhere on web page and test it better
Issue -
State: open - Opened by berndbischl over 10 years ago
#4 - Graph of dependent jobs?
Issue -
State: open - Opened by mllg over 10 years ago
- 9 comments
Labels: enhancement