tskit-dev/tskit-rust issues and pull requests

#524 - chore: update bitflags requirement from 1.2.1 to 2.3.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, rust

#523 - chore: update bindgen requirement from 0.65.1 to 0.66.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies, rust

#522 - chore: update bitflags requirement from 1.2.1 to 2.3.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, rust

#521 - refactor: Remove unneeded private feilds from struct Tree

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#520 - Is Tree a type or a trait?

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#519 - refactor: mark all pub enums non_exhaustive.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#518 - make TskitError an opaque struct

Pull Request - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#517 - Add tree interface abstraction to sys

Pull Request - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#516 - refactor: Add sys::LLTree

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#515 - Reorganize tree code

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#514 - refactor: LLTreeSeq impl now takes flag types directly

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#513 - chore: move flags into sys and re-export

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#512 - chore: reorganize treeseq code in sys

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#511 - chore: reorganize tables code in sys

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#510 - feature gate bindings

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#509 - refactor: remove tsk_id_t

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#508 - refactor: remove TSK_NULL

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#507 - refactor: remove tsk_size_t

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#506 - refactor: remove tsk_flags_t from lib.rs and prelude

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#505 - refactor: remove TSK_NODE_IS_SAMPLE

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#504 - chore: move bindings into sys

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#503 - chore: move sys into subdir

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#502 - bump crate version

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#501 - bump C API

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#500 - chore: update bitflags requirement from 1.2.1 to 2.2.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, rust

#499 - chore: update bindgen requirement from 0.63.0 to 0.65.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, rust

#498 - Add test of Tree/TreeSeq liftimes

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#497 - add treeseq liftime to Tree

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#496 - bump bitflags when we next have a semver bump

Issue - State: closed - Opened by molpopgen over 1 year ago - 2 comments

#495 - chore: update bitflags requirement from 1.2.1 to 2.0.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 3 comments
Labels: dependencies, rust

#494 - chore: update delegate requirement from 0.8.0 to 0.9.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, rust

#493 - chore: add cargo-semver checks + caching to CI

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#492 - test: add cargo-semver to CI

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#491 - doc: book section on node defaults

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#491 - doc: book section on node defaults

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#490 - refactor: manually impl Default for NodeDefaultsWithMetadata

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#490 - refactor: manually impl Default for NodeDefaultsWithMetadata

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#489 - refactor: replace macros with fn for adding node table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#489 - refactor: replace macros with fn for adding node table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#488 - Support adding nodes via default values

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#488 - Support adding nodes via default values

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#487 - feat: implement Builder pattern for flags

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#486 - feat: impl Default for Bookmark

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#485 - refactor!: TableCollection::simplify now takes &[NodeId]

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#485 - refactor!: TableCollection::simplify now takes &[NodeId]

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#484 - feat: impl Default for row id types

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#483 - refactor: mod table_view is no longer pub

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#482 - refactor: remove internal impl Deref/DerefMut for edge diff iterator.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#481 - remove internal deref impl

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#480 - Use cargo semver during CI

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#479 - feat: Allow use of bookmark in examples/haploid_wright_fisher

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#478 - chore: bump MSRV to 1.60.0

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#477 - add internal tests for soundness

Pull Request - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#476 - chore: update bindgen requirement from 0.63.0 to 0.64.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies, rust

#475 - Metadata retrieval doc strings

Issue - State: open - Opened by molpopgen over 1 year ago
Labels: documentation

#474 - doc: add book section on NodeDefaults

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#473 - style: Deprecate "OwningX" type aliases for tables.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#472 - doc: Remove references to "Owning" table types.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#471 - docs: Fix links to provenance table in docs

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#470 - test: Use cargo semver-checks during CI

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#469 - chore: update delegate requirement from 0.8.0 to 0.9.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, rust

#468 - Use semver-checks in CI

Issue - State: closed - Opened by molpopgen over 1 year ago - 2 comments

#467 - Owning type names are still used.

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#466 - Support default values for adding nodes

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#465 - refactor: remove generic from TableCollection::simplify

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#464 - start on builder api for simplification flags

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#463 - feat: impl Default for Bookmark

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#462 - refactor: remove code duplication for adding provenance table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#462 - refactor: remove code duplication for adding provenance table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#461 - refactor: Remove code duplication when adding migration table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#461 - refactor: Remove code duplication when adding migration table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#460 - refactor: remove code duplication for adding site table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#460 - refactor: remove code duplication for adding site table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#459 - refactor: Remove code duplication for adding mutation table rows.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#459 - refactor: Remove code duplication for adding mutation table rows.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#458 - refactor: Reduce code duplication adding individual table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#458 - refactor: Reduce code duplication adding individual table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#458 - refactor: Reduce code duplication adding individual table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#457 - refactor: Remove code duplication when adding population table rows.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#457 - refactor: Remove code duplication when adding population table rows.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#456 - Remove code duplication: adding edge table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#456 - Remove code duplication: adding edge table rows

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#455 - feat: TableViews can now lend &mut for all table types.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#455 - feat: TableViews can now lend &mut for all table types.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#455 - feat: TableViews can now lend &mut for all table types.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#454 - feat: TableViews can now lend &mut for all table types.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#454 - feat: TableViews can now lend &mut for all table types.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#454 - feat: TableViews can now lend &mut for all table types.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#453 - refactor: remove code duplication for adding rows to NodeTable.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#453 - refactor: remove code duplication for adding rows to NodeTable.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#452 - Fix docs in tree.rs re: DerefMut vs delegating.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#452 - Fix docs in tree.rs re: DerefMut vs delegating.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#452 - Fix docs in tree.rs re: DerefMut vs delegating.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#451 - refactor: remove impl Deref/DerefMut for LLEdgeDifferencesIterator

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#451 - refactor: remove impl Deref/DerefMut for LLEdgeDifferencesIterator

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#451 - refactor: remove impl Deref/DerefMut for LLEdgeDifferencesIterator

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#450 - Internal type related to edge difference iterator implements Deref/DerefMut

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment
Labels: API

#449 - TreeSequence docs mistakenly refer to Deref

Issue - State: closed - Opened by molpopgen over 1 year ago - 2 comments
Labels: documentation

#448 - Add type for managing pointers to tskit-c types.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#448 - Add type for managing pointers to tskit-c types.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

GitHub / tskit-dev/tskit-rust issues and pull requests