Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / tskit-dev/tsdate issues and pull requests
#208 - Error in assignment?
Issue -
State: closed - Opened by benjeffery over 2 years ago
- 14 comments
#207 - Update pre-commit
Pull Request -
State: closed - Opened by benjeffery over 2 years ago
#206 - iwt --- OverflowError: int too large to convert to float
Issue -
State: closed - Opened by chlangley over 2 years ago
- 2 comments
#205 - Make CI single threaded
Pull Request -
State: closed - Opened by benjeffery over 2 years ago
#204 - Fix approx checks
Pull Request -
State: closed - Opened by benjeffery over 2 years ago
- 2 comments
#203 - Set node metadata schema
Issue -
State: closed - Opened by hyanwong over 2 years ago
- 11 comments
#202 - Add population_size as alias for Ne
Issue -
State: closed - Opened by hyanwong over 2 years ago
- 3 comments
#201 - Default to not filtering sites, pops, indivs in preprocess
Pull Request -
State: closed - Opened by hyanwong over 2 years ago
- 3 comments
#200 - fix mutation rate in tests, re-add historical examples test
Pull Request -
State: closed - Opened by hyanwong over 2 years ago
- 1 comment
#199 - Update readme to cite Science paper
Pull Request -
State: closed - Opened by hyanwong over 2 years ago
- 9 comments
#198 - Investigate poor dating performance for ancient nodes, revealed by Brandt et al
Issue -
State: open - Opened by hyanwong over 2 years ago
- 7 comments
#197 - circleci failing, but tests pass locally?
Issue -
State: closed - Opened by awohns over 2 years ago
- 11 comments
#195 - Return posterior and set time_units
Pull Request -
State: closed - Opened by hyanwong over 2 years ago
#194 - Modify tables
Pull Request -
State: closed - Opened by hyanwong over 2 years ago
- 1 comment
#193 - Upgrade circle CI image
Pull Request -
State: closed - Opened by benjeffery over 2 years ago
- 4 comments
#192 - Use new append functionality
Pull Request -
State: closed - Opened by hyanwong over 2 years ago
- 2 comments
#191 - Add tutorial for reinferring tsinfer tree sequences using estimated dates
Issue -
State: open - Opened by awohns over 2 years ago
- 3 comments
Labels: documentation
#190 - Sampling times from posterior
Issue -
State: closed - Opened by awohns over 2 years ago
- 9 comments
Labels: enhancement
#189 - Support time units in tree sequence
Issue -
State: closed - Opened by awohns over 2 years ago
- 2 comments
#188 - require mutation_rate, fail if unsimplified
Pull Request -
State: closed - Opened by awohns over 2 years ago
- 7 comments
#187 - require that tree sequences are simplified
Issue -
State: closed - Opened by awohns over 2 years ago
- 5 comments
#186 - Add LiTI to Tsdate?
Issue -
State: closed - Opened by swamidass almost 3 years ago
- 2 comments
#185 - mutation_rate as a required parameter
Issue -
State: closed - Opened by awohns almost 3 years ago
- 2 comments
#184 - update CHANGELOG
Pull Request -
State: closed - Opened by awohns about 3 years ago
#183 - remove typed list and pin numba
Pull Request -
State: closed - Opened by awohns about 3 years ago
#182 - What is a solution to the dangling nodes error?
Issue -
State: open - Opened by stsmall about 3 years ago
- 1 comment
#181 - Export get_dates (without documentation)
Pull Request -
State: closed - Opened by awohns about 3 years ago
#180 - Rename date.py
Pull Request -
State: closed - Opened by awohns about 3 years ago
#179 - Add option for a flat prior
Issue -
State: closed - Opened by awohns about 3 years ago
- 11 comments
#178 - Change preprocess_ts() defaults
Issue -
State: closed - Opened by awohns about 3 years ago
- 2 comments
#177 - add citation information to documentation
Pull Request -
State: closed - Opened by awohns about 3 years ago
#176 - add simple test cases with exhaustive enumeration of all possible combos of node times
Issue -
State: open - Opened by awohns about 3 years ago
#175 - fix numba deprecation
Pull Request -
State: closed - Opened by awohns about 3 years ago
#174 - Numba type scheduled for deprecation
Issue -
State: closed - Opened by hyanwong about 3 years ago
- 5 comments
#173 - Use .tobytes() instead of deprecated .tostring()
Pull Request -
State: closed - Opened by hyanwong about 3 years ago
#172 - Use num_edges directly
Pull Request -
State: closed - Opened by hyanwong about 3 years ago
- 2 comments
#171 - Address underflow in log-sum-exp
Pull Request -
State: closed - Opened by awohns over 3 years ago
- 8 comments
#170 - citation information
Issue -
State: closed - Opened by agladstein over 3 years ago
- 1 comment
#169 - fix race condition, again
Pull Request -
State: closed - Opened by awohns over 3 years ago
#167 - Build wheels
Pull Request -
State: closed - Opened by benjeffery over 3 years ago
#166 - Assessing best avenues for improved date estimation.
Issue -
State: open - Opened by hyanwong over 3 years ago
- 7 comments
#165 - Loopy Belief Propagation
Issue -
State: closed - Opened by awohns over 3 years ago
- 7 comments
#161 - fix race condition tests
Pull Request -
State: closed - Opened by awohns over 3 years ago
#156 - Use Unscaled Time Internally
Pull Request -
State: closed - Opened by awohns over 3 years ago
- 7 comments
#144 - Add 'remove_historical_samples' option to preprocess_ts?
Issue -
State: open - Opened by hyanwong over 3 years ago
#139 - Move repo to tskit-dev
Issue -
State: closed - Opened by awohns over 3 years ago
- 12 comments
#137 - Should we continue to use coalescent time internally?
Issue -
State: closed - Opened by hyanwong over 3 years ago
- 5 comments
#118 - Caching issue
Pull Request -
State: closed - Opened by awohns over 4 years ago
#117 - circleci caching
Pull Request -
State: closed - Opened by awohns over 4 years ago
#96 - Simplify root iterations & ts checking using new `root_threshold `
Issue -
State: closed - Opened by hyanwong over 4 years ago
- 3 comments
#95 - Lognormal, probability_space framework, correct logic, more tests
Pull Request -
State: closed - Opened by awohns over 4 years ago
- 1 comment
#94 - Maximization performs worse than inside-outside: Improvements?
Issue -
State: closed - Opened by awohns over 4 years ago
#80 - added support for internal samples, more tests coming
Pull Request -
State: closed - Opened by awohns over 4 years ago
- 5 comments
#65 - Add support in backwards step for dangling nodes
Issue -
State: closed - Opened by hyanwong over 4 years ago
- 1 comment
Labels: enhancement
#52 - Areas not covered by code
Issue -
State: open - Opened by hyanwong over 4 years ago
Labels: good first issue
#40 - Viterbi Algorithm
Issue -
State: closed - Opened by awohns over 4 years ago
- 4 comments
Labels: enhancement
#38 - Dating dangling nodes
Issue -
State: open - Opened by awohns almost 5 years ago
- 2 comments
Labels: enhancement
#36 - Use timeslices, not timepoints, with children & parents allowed in the same timeslice
Issue -
State: closed - Opened by hyanwong almost 5 years ago
- 4 comments
#30 - Take find_node_tip_weights out of prior_maker
Pull Request -
State: closed - Opened by hyanwong almost 5 years ago
- 1 comment
#29 - added approximate prior and efficient mutation mapping
Pull Request -
State: closed - Opened by awohns almost 5 years ago
- 1 comment
#7 - Extend the top end of the adaptive time grid to include large values
Issue -
State: open - Opened by hyanwong almost 5 years ago
- 1 comment
Labels: invalid