Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / tskit-dev/msprime issues and pull requests
#2285 - MacOS ARM wheels packages broken
Issue -
State: open - Opened by jeromekelleher about 1 month ago
- 2 comments
Labels: bug
#2284 - stat verification gc smck
Pull Request -
State: closed - Opened by GertjanBisschop about 2 months ago
- 2 comments
#2283 - update installation docs
Pull Request -
State: closed - Opened by GertjanBisschop about 2 months ago
- 1 comment
#2282 - Smc(k) gene conversion
Pull Request -
State: closed - Opened by GertjanBisschop about 2 months ago
- 3 comments
#2281 - merge
Pull Request -
State: closed - Opened by agushin101 about 2 months ago
#2280 - Enable gene conversion for SMC_K model
Issue -
State: closed - Opened by GertjanBisschop 2 months ago
- 1 comment
#2278 - How to very quickly record marginal changes in tree height along a sequence?
Issue -
State: closed - Opened by trevorcousins 2 months ago
- 3 comments
#2277 - Fix OSX tests
Pull Request -
State: closed - Opened by benjeffery 2 months ago
- 7 comments
#2276 - add tree fixation using newick string and TreeSequence object
Pull Request -
State: open - Opened by not-a-feature 3 months ago
- 5 comments
#2275 - Fix codecov
Pull Request -
State: closed - Opened by benjeffery 3 months ago
- 1 comment
#2273 - add record_provenance argument to sim_mutations; closes #2272
Pull Request -
State: open - Opened by petrelharp 3 months ago
- 1 comment
#2272 - no `record_provenance` argument to sim_mutations
Issue -
State: open - Opened by petrelharp 3 months ago
#2271 - Clarify the meaning of the mutation rate when a matrix is used
Pull Request -
State: open - Opened by hyanwong 3 months ago
- 3 comments
#2270 - Hulls
Pull Request -
State: closed - Opened by GertjanBisschop 4 months ago
- 2 comments
#2269 - AFS folding (polarised=False)
Issue -
State: open - Opened by sunyatin 4 months ago
- 6 comments
#2267 - Disallow unstable beta coalescents
Pull Request -
State: closed - Opened by JereKoskela 4 months ago
- 5 comments
#2266 - multiallelic sites within the VCF
Issue -
State: open - Opened by LuisGFdez 5 months ago
- 1 comment
#2265 - Verification kdeplot
Pull Request -
State: closed - Opened by daikitag 5 months ago
- 1 comment
#2264 - Docs versioning no longer working
Issue -
State: open - Opened by jeromekelleher 5 months ago
- 2 comments
Labels: documentation
#2263 - Update docs copyright year
Issue -
State: closed - Opened by jeromekelleher 5 months ago
Labels: documentation
#2262 - Update installation docs for minimum python version
Issue -
State: closed - Opened by jeromekelleher 5 months ago
Labels: documentation
#2261 - Document no pip install on Windows
Issue -
State: closed - Opened by daikitag 5 months ago
- 1 comment
Labels: documentation
#2258 - update changelog
Pull Request -
State: closed - Opened by GertjanBisschop 5 months ago
- 1 comment
#2257 - Numerical stability of beta model
Pull Request -
State: closed - Opened by JereKoskela 5 months ago
- 6 comments
#2256 - Discrepancy between expected and observed coalescence time in beta coalescent for large values of alpha
Issue -
State: closed - Opened by Sendrowski 5 months ago
- 23 comments
#2255 - Demography.from_demes(): ancestral population sizes and migration rates missing
Issue -
State: open - Opened by simonharnqvist 5 months ago
- 6 comments
#2249 - issue with replicates using "num_replicates"
Issue -
State: closed - Opened by yzliu01 6 months ago
- 4 comments
#2248 - global stop condition
Pull Request -
State: open - Opened by GertjanBisschop 7 months ago
- 1 comment
#2247 - Syncing sweeps implementation in algorithms.py
Pull Request -
State: open - Opened by GertjanBisschop 7 months ago
- 1 comment
#2246 - Update pypi release package
Pull Request -
State: closed - Opened by benjeffery 7 months ago
#2245 - Update changelog date
Pull Request -
State: closed - Opened by benjeffery 7 months ago
#2244 - Remove research notice
Pull Request -
State: closed - Opened by jeromekelleher 7 months ago
- 1 comment
#2243 - Save information about sweep in SweepGenicSelection model
Issue -
State: open - Opened by jeromekelleher 7 months ago
- 6 comments
Labels: enhancement
#2242 - Illogical Lineage Counts in algorithms.py
Issue -
State: open - Opened by agushin101 7 months ago
- 7 comments
#2241 - Additional stats tests microsats
Pull Request -
State: closed - Opened by GertjanBisschop 7 months ago
- 1 comment
#2240 - Update demography tests to stdpopsim 0.2
Issue -
State: open - Opened by GertjanBisschop 7 months ago
- 1 comment
Labels: Infrastructure and tools
#2239 - pin stdpopsim
Pull Request -
State: closed - Opened by GertjanBisschop 7 months ago
- 2 comments
#2238 - avoid negative probs, closes #2237
Pull Request -
State: closed - Opened by petrelharp 7 months ago
- 1 comment
#2237 - TPM microsats model transition matrix error
Issue -
State: closed - Opened by GertjanBisschop 7 months ago
- 6 comments
#2236 - verification.py updates
Pull Request -
State: closed - Opened by GertjanBisschop 7 months ago
- 1 comment
#2235 - Computing likelihood for decapitated ARGs.
Issue -
State: open - Opened by GertjanBisschop 7 months ago
Labels: enhancement
#2234 - make verfication.py compatible with latest pyslim
Pull Request -
State: closed - Opened by GertjanBisschop 7 months ago
- 1 comment
#2233 - Tests fail with stdpopsim 0.2.0
Issue -
State: open - Opened by benjeffery 7 months ago
- 7 comments
Labels: Infrastructure and tools
#2232 - modify checks arg lik
Pull Request -
State: closed - Opened by GertjanBisschop 7 months ago
- 8 comments
#2231 - remove ll_representation argument
Pull Request -
State: open - Opened by GertjanBisschop 7 months ago
- 2 comments
#2230 - fix msmssweeps verification
Pull Request -
State: closed - Opened by GertjanBisschop 7 months ago
- 1 comment
#2229 - AttributeErrors in verification.py: MsmsSweeps
Issue -
State: closed - Opened by GertjanBisschop 7 months ago
- 5 comments
#2228 - remove tests/data folder
Pull Request -
State: closed - Opened by GertjanBisschop 7 months ago
- 3 comments
#2227 - update changelog
Pull Request -
State: closed - Opened by GertjanBisschop 7 months ago
- 1 comment
#2226 - 1.3.0 Release
Issue -
State: closed - Opened by jeromekelleher 7 months ago
- 2 comments
#2225 - dtwf/ped stats tests
Pull Request -
State: closed - Opened by GertjanBisschop 7 months ago
- 1 comment
#2224 - fix sorting bug pedigrees
Pull Request -
State: closed - Opened by GertjanBisschop 7 months ago
- 1 comment
#2223 - Island model - migration rate definition
Issue -
State: closed - Opened by JaneeshBansal 8 months ago
- 1 comment
#2222 - Update development.md
Pull Request -
State: closed - Opened by daikitag 8 months ago
- 1 comment
#2221 - CpG mutation models
Issue -
State: open - Opened by hyanwong 8 months ago
- 3 comments
#2220 - Update DOI msprime 1.0 paper CITATION.md
Pull Request -
State: closed - Opened by GertjanBisschop 8 months ago
- 1 comment
#2218 - No Sweep Model for Spatially Structured Populations
Issue -
State: open - Opened by YuanboSong 8 months ago
- 1 comment
#2217 - Inconsistencies between algorithm.c and algorithm.py
Issue -
State: open - Opened by YuanboSong 8 months ago
- 1 comment
#2216 - Fix docs build warning
Pull Request -
State: closed - Opened by benjeffery 8 months ago
- 1 comment
#2214 - Update pedigree doc
Pull Request -
State: closed - Opened by daikitag 8 months ago
- 4 comments
#2213 - Example to simulate multiple bottlenecks for a population over several time points
Issue -
State: closed - Opened by yzliu01 8 months ago
- 4 comments
#2212 - Clarify the population size is diploid (by default)
Pull Request -
State: closed - Opened by hyanwong 8 months ago
- 4 comments
#2211 - draw_pedigree documentation
Issue -
State: closed - Opened by daikitag 8 months ago
- 3 comments
#2210 - Documentation for replicate_index
Issue -
State: open - Opened by daikitag 8 months ago
- 3 comments
#2208 - Update PyPI auth method
Pull Request -
State: closed - Opened by benjeffery 9 months ago
- 1 comment
#2207 - Update pre commit
Pull Request -
State: closed - Opened by benjeffery 9 months ago
- 3 comments
#2206 - Update deps, remove py37 and fix test warnings
Pull Request -
State: closed - Opened by benjeffery 9 months ago
- 1 comment
#2205 - Update docs build
Pull Request -
State: closed - Opened by benjeffery 9 months ago
- 1 comment
#2204 - Problem with Demography Debugger output
Issue -
State: closed - Opened by helmutsimon 9 months ago
- 2 comments
#2202 - Set favicon
Pull Request -
State: closed - Opened by jeromekelleher 10 months ago
- 5 comments
#2201 - Clean up config and get version working
Pull Request -
State: closed - Opened by jeromekelleher 10 months ago
- 3 comments
#2200 - Publish pip wheels for Windows
Issue -
State: open - Opened by tomwhite 10 months ago
- 1 comment
#2199 - raise error when recording migrants
Pull Request -
State: closed - Opened by GertjanBisschop 10 months ago
- 1 comment
#2198 - The error for importing msprime
Issue -
State: closed - Opened by frezaei98 10 months ago
- 1 comment
#2197 - Change docs theme to sphinx-book-theme
Pull Request -
State: closed - Opened by benjeffery 11 months ago
- 1 comment
#2195 - parent node having a time value <= to its child
Issue -
State: closed - Opened by connor-french 11 months ago
- 8 comments
#2194 - update docs
Pull Request -
State: closed - Opened by GertjanBisschop 11 months ago
- 4 comments
#2193 - Update docs config
Pull Request -
State: closed - Opened by benjeffery 11 months ago
- 1 comment
#2192 - Update docs deps
Pull Request -
State: closed - Opened by benjeffery 11 months ago
#2190 - recording migrants with sweep model
Issue -
State: closed - Opened by GertjanBisschop 12 months ago
- 3 comments
#2189 - Update intro.md to add tutorial links
Pull Request -
State: closed - Opened by hyanwong 12 months ago
- 1 comment
#2187 - problems with gsl version in pyslim 1.0.3
Issue -
State: closed - Opened by ShyamieG 12 months ago
- 6 comments
#2186 - Recording recombination events
Issue -
State: closed - Opened by GertjanBisschop about 1 year ago
- 1 comment
#2185 - additional_nodes docs
Pull Request -
State: closed - Opened by GertjanBisschop about 1 year ago
- 2 comments
#2184 - msprime.simulate() - Generates Value error on call to `ts.as_fasta()` when Ne is set
Issue -
State: closed - Opened by isaacovercast about 1 year ago
- 1 comment
#2183 - auto_flush_edges
Pull Request -
State: closed - Opened by GertjanBisschop about 1 year ago
- 1 comment
#2182 - Autoflush edges in the simulator
Issue -
State: closed - Opened by jeromekelleher about 1 year ago
- 1 comment
#2181 - Prototype
Pull Request -
State: closed - Opened by jeromekelleher about 1 year ago
- 1 comment
#2180 - Test and build wheels on 3.11
Pull Request -
State: closed - Opened by benjeffery about 1 year ago
- 5 comments
#2177 - Python 3.11 wheels
Issue -
State: closed - Opened by tomwhite about 1 year ago
- 1 comment
#2176 - Additional_nodes DTWF/FIXED_PEDIGREE
Pull Request -
State: closed - Opened by GertjanBisschop about 1 year ago
- 1 comment
#2175 - doi for msprime 1.0 is not correct
Issue -
State: closed - Opened by xin-huang about 1 year ago
- 2 comments
Labels: documentation
#2174 - modified stats test unary nodes
Pull Request -
State: closed - Opened by GertjanBisschop about 1 year ago
- 1 comment
#2173 - clarification to migration documentation
Pull Request -
State: closed - Opened by petrelharp about 1 year ago
- 1 comment
#2170 - Fix codecov with token
Pull Request -
State: closed - Opened by benjeffery about 1 year ago
- 5 comments
#2169 - Fix codecov
Pull Request -
State: closed - Opened by benjeffery about 1 year ago
#2168 - Update verification.py to use coalescent_segments_only flag
Issue -
State: closed - Opened by GertjanBisschop about 1 year ago
- 1 comment
#2167 - enable additional_nodes and coalescing_segments_only flags for DTWF and FixedPedigree
Issue -
State: closed - Opened by GertjanBisschop about 1 year ago
- 1 comment
#2166 - Fix lint action
Pull Request -
State: closed - Opened by benjeffery about 1 year ago
#2165 - Update mergify config
Pull Request -
State: closed - Opened by benjeffery over 1 year ago