tskit-dev/kastore issues and pull requests

#202 - Version 0.3.3

Pull Request - State: closed - Opened by benjeffery 6 days ago

#201 - Build sdist correctly

Pull Request - State: closed - Opened by benjeffery 6 days ago

#200 - Upgrade actions infrastructure

Pull Request - State: closed - Opened by benjeffery 7 days ago - 4 comments

#199 - Numpy 2 support

Pull Request - State: closed - Opened by jeromekelleher 11 days ago - 3 comments

#198 - Update to support numpy >= 2

Issue - State: open - Opened by jeromekelleher 11 days ago

#197 - Fix codecov

Pull Request - State: closed - Opened by benjeffery 3 months ago - 2 comments

#196 - Conda recipe does not work on (my?) Apple M2

Issue - State: open - Opened by hannesbecher 7 months ago - 1 comment

#195 - Python 3.11

Pull Request - State: closed - Opened by benjeffery about 1 year ago - 1 comment

#194 - Fix codecov and other CI issues

Pull Request - State: closed - Opened by benjeffery about 1 year ago - 1 comment

#193 - Support Python 3.11

Pull Request - State: closed - Opened by benjeffery over 1 year ago - 1 comment

#192 - Release prep

Pull Request - State: closed - Opened by benjeffery almost 2 years ago - 1 comment

#191 - Modernise build

Pull Request - State: closed - Opened by benjeffery almost 2 years ago - 2 comments

#190 - Python 3.10: RuntimeError: module compiled against API version 0x10 but this version of numpy is 0xf

Issue - State: closed - Opened by grahamgower about 2 years ago - 9 comments

#189 - Prevent `contains` from borrowing an array

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 1 comment

#188 - Release prep

Pull Request - State: closed - Opened by benjeffery over 2 years ago

#187 - Rename version file

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 1 comment

#186 - Rename VERSION to VERSION.txt in meson config

Issue - State: closed - Opened by jeromekelleher over 2 years ago

#185 - Fix borrow when array is NULL

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 3 comments

#184 - Doc fix

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 2 comments

#183 - Fix error string

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 1 comment

#182 - C Version 2.1.0

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 1 comment

#181 - Implement KAS_PUT_BORROWS_ARRAY

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 7 comments

#180 - Add put method (or flag to open) where kastore neither copies or takes ownership of the buffer.

Issue - State: closed - Opened by benjeffery over 2 years ago - 5 comments

#179 - KAS_GET_TAKES_OWNERSHIP

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 9 comments

#178 - Update mergify config for deprecations

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 1 comment

#177 - Seperate allocs for KAS_READ_ALL

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 9 comments

#176 - Add open flag to transfer ownership of array buffers

Issue - State: closed - Opened by jeromekelleher over 2 years ago - 2 comments

#175 - Change READ_ALL semantics to sequentially reading to separate buffers

Issue - State: closed - Opened by jeromekelleher over 2 years ago
Labels: enhancement

#174 - Add test for version number and bump to 1.0.2

Pull Request - State: closed - Opened by jeromekelleher over 2 years ago - 1 comment

#173 - Add release tarball action

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 2 comments

#172 - Fix wheel building tests

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 1 comment

#171 - Release tarball should extract to directory

Issue - State: closed - Opened by jeromekelleher over 2 years ago

#170 - Release tarball should dererence symlinks for test-data

Issue - State: closed - Opened by jeromekelleher over 2 years ago - 1 comment

#169 - Release tarball for C_2.0.1 has the wrong name

Issue - State: closed - Opened by jeromekelleher over 2 years ago - 1 comment

#168 - C 2.0.1 prep

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 1 comment

#167 - Bump test coverage in low-level module

Pull Request - State: closed - Opened by jeromekelleher over 2 years ago - 3 comments

#166 - Bump up Python C api test coverage

Issue - State: closed - Opened by jeromekelleher over 2 years ago

#165 - Update meson config

Pull Request - State: closed - Opened by jeromekelleher over 2 years ago - 1 comment

#164 - Add missing goto and fix tests

Pull Request - State: closed - Opened by jeromekelleher over 2 years ago - 1 comment

#163 - Update python and pre-commit

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 1 comment

#162 - Fix circleCI

Pull Request - State: closed - Opened by benjeffery over 2 years ago - 1 comment

#161 - Fix mergify

Pull Request - State: closed - Opened by benjeffery over 2 years ago

#160 - error code not returned

Issue - State: closed - Opened by bhaller over 2 years ago - 1 comment
Labels: bug

#159 - Ship standalone C tarball

Issue - State: closed - Opened by jeromekelleher over 2 years ago - 16 comments

#158 - Update meson config

Issue - State: closed - Opened by jeromekelleher over 2 years ago - 1 comment

#157 - CircleCI builds broken

Issue - State: closed - Opened by jeromekelleher over 2 years ago - 1 comment

#156 - Mergify configuration broken

Issue - State: closed - Opened by jeromekelleher over 2 years ago

#155 - Update mergify config

Pull Request - State: closed - Opened by jeromekelleher over 2 years ago - 1 comment

#154 - Change internal flag value to fit into 16 bit int

Pull Request - State: closed - Opened by jeromekelleher over 2 years ago - 3 comments

#153 - undefined behavior sanitizer dislikes (1 << 31)

Issue - State: closed - Opened by bhaller over 2 years ago - 4 comments
Labels: bug

#152 - Add checksum to header

Issue - State: open - Opened by jeromekelleher over 2 years ago - 1 comment
Labels: enhancement

#151 - Add GitHub actions badges to README

Issue - State: open - Opened by jeromekelleher over 3 years ago

#150 - Delete obsolete badges.

Pull Request - State: closed - Opened by jeromekelleher over 3 years ago - 1 comment

#149 - Add mergify

Pull Request - State: closed - Opened by benjeffery over 3 years ago

#148 - Move tests to actions

Pull Request - State: closed - Opened by benjeffery over 3 years ago

#147 - Update pre-commit and and clang-format

Pull Request - State: closed - Opened by benjeffery over 3 years ago - 1 comment

#146 - Update CI config

Issue - State: closed - Opened by jeromekelleher over 3 years ago - 3 comments

#145 - Update Circle config to new image.

Pull Request - State: closed - Opened by jeromekelleher over 3 years ago - 1 comment

#144 - Add appropriate casts, e.g. (char *), to malloc/calloc/realloc.

Pull Request - State: closed - Opened by clorton over 3 years ago - 6 comments

#143 - Fix warning on gcc 4.8.5

Pull Request - State: closed - Opened by benjeffery over 3 years ago - 1 comment

#142 - trivial fix needed for warning

Issue - State: closed - Opened by bhaller over 3 years ago - 7 comments

#141 - Fix development makefile to allow compilation.

Pull Request - State: closed - Opened by jeromekelleher over 3 years ago - 4 comments

#140 - Create .gitignore

Pull Request - State: closed - Opened by hyanwong over 3 years ago - 1 comment

#139 - Test using pytest?

Issue - State: open - Opened by hyanwong over 3 years ago - 6 comments

#138 - Test and build wheels for python3.9

Pull Request - State: closed - Opened by benjeffery over 3 years ago - 1 comment

#137 - Don't build c module on RTD

Pull Request - State: closed - Opened by benjeffery almost 4 years ago - 1 comment

#136 - master->main

Pull Request - State: closed - Opened by benjeffery almost 4 years ago - 2 comments

#135 - CLI to compare 2 kastore files

Issue - State: open - Opened by hyanwong almost 4 years ago - 2 comments

#134 - 0.3.1 Changelog and version update

Pull Request - State: closed - Opened by benjeffery almost 4 years ago - 1 comment

#133 - C API installation ?

Issue - State: closed - Opened by Becheler almost 4 years ago - 2 comments

#132 - Release 0.3.1

Issue - State: closed - Opened by jeromekelleher about 4 years ago - 1 comment

#131 - Use oldest-supported-numpy in wheel building

Pull Request - State: closed - Opened by benjeffery about 4 years ago - 3 comments

#130 - modify store example

Pull Request - State: closed - Opened by petrelharp about 4 years ago - 2 comments

#129 - oldest-supported-numpy needs to go into wheel building

Issue - State: closed - Opened by jeromekelleher about 4 years ago - 3 comments

#128 - Removed oldest-supported-numpy from setup.py

Pull Request - State: closed - Opened by jeromekelleher about 4 years ago - 2 comments

#127 - oldest_supported_numpy in setup.py causing issues on conda

Issue - State: closed - Opened by jeromekelleher about 4 years ago
Labels: bug

#126 - Use production PyPI password

Pull Request - State: closed - Opened by benjeffery about 4 years ago - 1 comment

#125 - Prep release - increment versions and complete changelogs

Pull Request - State: closed - Opened by benjeffery about 4 years ago - 1 comment

#124 - Docs update

Pull Request - State: closed - Opened by jeromekelleher about 4 years ago - 2 comments

#123 - Typo

Pull Request - State: closed - Opened by hyanwong about 4 years ago - 1 comment

#122 - Fix EOF semantics.

Pull Request - State: closed - Opened by jeromekelleher about 4 years ago - 1 comment

#121 - EOF semantics incorrect

Issue - State: closed - Opened by jeromekelleher about 4 years ago
Labels: bug

#120 - Change EOF message

Issue - State: closed - Opened by jeromekelleher about 4 years ago

#119 - Circle builds failing on master

Issue - State: closed - Opened by jeromekelleher about 4 years ago - 3 comments

#118 - Build wheels in github action, upload to pypi on tag

Pull Request - State: closed - Opened by benjeffery about 4 years ago - 6 comments

#117 - Add license and platforms to setup.py

Pull Request - State: closed - Opened by benjeffery about 4 years ago

#116 - Format C code with clang-format

Pull Request - State: closed - Opened by benjeffery about 4 years ago - 1 comment

#115 - Update trove classifier

Pull Request - State: closed - Opened by benjeffery about 4 years ago - 2 comments

#114 - Require python 3.6

Pull Request - State: closed - Opened by benjeffery about 4 years ago - 1 comment

#113 - Change "Development status" in setup.py to stable

Issue - State: closed - Opened by jeromekelleher about 4 years ago

#112 - Change copyright/author etc to Tskit developers

Issue - State: closed - Opened by jeromekelleher about 4 years ago - 1 comment

#111 - Add pre-commit checks

Pull Request - State: closed - Opened by benjeffery about 4 years ago - 2 comments

#110 - Add github action to automate sdist upload and manylinux wheel builds?

Issue - State: closed - Opened by jeromekelleher about 4 years ago - 6 comments

#109 - Update RTD configuration.

Pull Request - State: closed - Opened by jeromekelleher about 4 years ago - 1 comment

#108 - Enable nosetests on Appveyor.

Pull Request - State: closed - Opened by jeromekelleher about 4 years ago - 1 comment

#107 - Verify RTD build

Issue - State: closed - Opened by jeromekelleher about 4 years ago - 1 comment

#106 - Fix bugs

Pull Request - State: closed - Opened by jeromekelleher about 4 years ago - 1 comment

#105 - AppVeyor tests not actually running.

Issue - State: closed - Opened by jeromekelleher about 4 years ago

#104 - Add tskit standard formatting

Issue - State: closed - Opened by jeromekelleher about 4 years ago - 6 comments

#103 - Set min python version to 3.6

Issue - State: closed - Opened by jeromekelleher about 4 years ago - 1 comment

GitHub / tskit-dev/kastore issues and pull requests