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GitHub / tseemann/prokka issues and pull requests

#722 - Update prokka

Pull Request - State: open - Opened by qiangqianglab 3 months ago

#721 - Select multiple annotation modes?

Issue - State: open - Opened by wfgui 3 months ago

#720 - No annotation of existing genes

Issue - State: open - Opened by wfgui 4 months ago

#718 - option to include scores in prokka output

Issue - State: open - Opened by jvera888 6 months ago

#717 - Prokka blast version issue?

Issue - State: open - Opened by theblendermann 6 months ago - 1 comment

#716 - Incorrect output format?

Issue - State: closed - Opened by Footboard5358 7 months ago - 1 comment

#715 - Incorrect annotation

Issue - State: open - Opened by jpeasari 7 months ago

#711 - CPU utilization of Prokka

Issue - State: open - Opened by Sourdoc 10 months ago

#709 - File writing error

Issue - State: open - Opened by Andyargueasae 10 months ago

#708 - Genes missing /gene field in .gbk output

Issue - State: open - Opened by NonAggressiveHail 10 months ago

#707 - Rabies genome annotation

Issue - State: open - Opened by marco315176 11 months ago

#706 - Prokka needs blastp 2.2 or higher.

Issue - State: open - Opened by siryanto 11 months ago - 2 comments

#705 - Prokka error with Bio::SearchIO::hmmer3

Issue - State: closed - Opened by Kim-Gihyeon 11 months ago - 1 comment

#704 - Some difference using --kingdom option

Issue - State: open - Opened by ZeWLi 11 months ago

#703 - commande line

Issue - State: open - Opened by azouradel about 1 year ago - 1 comment

#702 - tbl2asn no longer available - replaced with table2asn

Issue - State: open - Opened by dannagifford about 1 year ago - 6 comments

#701 - Annotate several genomes in FASTA format

Issue - State: open - Opened by azouradel about 1 year ago

#700 - annotate **several genomes

Issue - State: open - Opened by azouradel about 1 year ago

#699 - brew installation won't work

Issue - State: open - Opened by biotemon about 1 year ago

#698 - BIoconda issue

Issue - State: open - Opened by EddieGenius about 1 year ago

#697 - Preserve input order

Issue - State: open - Opened by iframst about 1 year ago

#696 - 'is not a readable non-empty FASTA file'

Issue - State: open - Opened by rlporter24 about 1 year ago - 2 comments

#695 - Prokka can't run command: cat error

Issue - State: open - Opened by avinash-ngc about 1 year ago

#694 - 求大神指导，跑着跑着出问题了

Issue - State: open - Opened by dedeqq11111 over 1 year ago

#693 - prokka跑fasta数据时，为什么出现了这些问题

Issue - State: open - Opened by dedeqq11111 over 1 year ago - 1 comment

#692 - prokka

Issue - State: open - Opened by dedeqq11111 over 1 year ago - 1 comment

#691 - --env

Issue - State: open - Opened by NielsPetitjean over 1 year ago

#690 - Merge latest version of prokka

Pull Request - State: closed - Opened by fluhus over 1 year ago - 1 comment

#689 - Cannot download DB of viruses

Issue - State: open - Opened by ruqaiyatasneem over 1 year ago - 1 comment

#688 - missing .gff file

Issue - State: open - Opened by keecarter over 1 year ago

#687 - Can't find required 'less' in your $PATH

Issue - State: open - Opened by 51mystic over 1 year ago

#686 - Problem with installing prokka

Issue - State: open - Opened by NorthonColt over 1 year ago - 1 comment

#685 - Can't locate Time/Piece.pm in @INC

Issue - State: open - Opened by zhonglinma over 1 year ago

#684 - Aragorn blocking installation and table2asn

Issue - State: open - Opened by c-m-gibbs over 1 year ago

#683 - prokka not giving out put if sequence is submitted

Issue - State: closed - Opened by willownine over 1 year ago - 2 comments

#681 - error in prediction of CDS, a lot of sequences

Issue - State: open - Opened by adolfoisla over 1 year ago

#680 - Report Bug on WSL Ubuntu

Issue - State: open - Opened by ruqaiyatasneem over 1 year ago - 1 comment

#679 - Prokka install fails because Aragorn website is down.

Issue - State: open - Opened by ranitori over 1 year ago - 5 comments

#676 - Coult not parse version from '885915 885915'

Issue - State: open - Opened by JCSigala almost 2 years ago

#675 - You need to install 'signalp' to use the --gram option.

Issue - State: open - Opened by abrozzi almost 2 years ago

#674 - fasta headers different between *.fna and *.faa file

Issue - State: closed - Opened by bheimbu almost 2 years ago

#673 - Prokka run Error

Issue - State: closed - Opened by marianajeeb almost 2 years ago

#672 - Is Prokka being maintained?

Issue - State: open - Opened by tarunaaggarwal about 2 years ago

#671 - Using amino acid fasta files as input

Issue - State: open - Opened by SanchitaKamath about 2 years ago

#670 - Date format in gbk file generated from fasta file

Issue - State: open - Opened by JipengLuo about 2 years ago

#669 - tbl2asn issues, again (in a M1 Macbook)

Issue - State: open - Opened by anbadilla about 2 years ago - 4 comments

#668 - Prokka empty and temporary output files

Issue - State: open - Opened by dsbard about 2 years ago

#667 - prokka issues. Please how do I fix this?

Issue - State: open - Opened by chimaobi2000 about 2 years ago - 6 comments

#666 - Could not determine version of tbl2asn - please install version 24.3 or higher

Issue - State: open - Opened by peiyaohu about 2 years ago - 3 comments

#665 - installing issues

Issue - State: closed - Opened by prabinshtha about 2 years ago - 1 comment

#664 - Can I generate COG categories in the gbk file?

Issue - State: open - Opened by qkqk-hub about 2 years ago

#662 - Convert Travis CI to Github Actions

Pull Request - State: open - Opened by rpetit3 about 2 years ago

#661 - Space missing in GenBank annotation file

Issue - State: open - Opened by etd530 over 2 years ago - 1 comment

#659 - Error when annotating big assemblies file.

Issue - State: open - Opened by RunJiaJi over 2 years ago

#658 - Output file is merging Locus name with length

Issue - State: open - Opened by arbujold over 2 years ago

#657 - Total of 8 + 46 != 53 tRNA + rRNA features ?

Issue - State: closed - Opened by cmkobel over 2 years ago - 1 comment

#655 - Number of tRNA

Issue - State: closed - Opened by ElsaMMendes over 2 years ago

#654 - Issue with installing conda environment in docker container

Issue - State: closed - Opened by colin-heberling over 2 years ago - 4 comments

#653 - tbl2asn Problem

Issue - State: open - Opened by fkessner over 2 years ago - 4 comments

#650 - Prokka Stopped: Cannot call method next result

Issue - State: open - Opened by KFWins2022 over 2 years ago - 1 comment

#649 - Update READEME.md

Pull Request - State: open - Opened by huoww07 over 2 years ago

#647 - CRISPR differences in statistics txt file

Issue - State: open - Opened by ireneortega almost 3 years ago

#646 - Problem wih tbl2asn

Issue - State: open - Opened by franzilie almost 3 years ago - 5 comments

#645 - How to annotate with custom database alone?

Issue - State: open - Opened by dineshkumarsrk almost 3 years ago - 1 comment

#644 - What does the "het" says?

Issue - State: closed - Opened by fredericQC almost 3 years ago - 1 comment

#643 - Preserving prodigal naming in fasta headers

Issue - State: open - Opened by nschan almost 3 years ago

#642 - Can't find required 'find' in your $PATH

Issue - State: open - Opened by junejbkim95 almost 3 years ago - 1 comment

#641 - file is not a readable non-empty FASTA file (OS: Linux mint, not WSL)

Issue - State: open - Opened by Silverfoxcome almost 3 years ago - 1 comment

#640 - HMM not indexed

Issue - State: open - Opened by btredcup almost 3 years ago - 1 comment

#639 - bioperl version comparaison :: problem.

Issue - State: open - Opened by EricDeveaud about 3 years ago - 1 comment

#638 - prokka issue with blast2- executing singularity

Issue - State: open - Opened by anugos about 3 years ago - 1 comment

#637 - Problems with annotations

Issue - State: open - Opened by manalcric about 3 years ago

#634 - installation issue

Issue - State: open - Opened by alessiaartusi about 3 years ago - 7 comments

#632 - Can't run prokka v1.13 with blastp v2.12

Issue - State: closed - Opened by noisrevni about 3 years ago - 2 comments

#631 - Getting just the structural annotation

Issue - State: open - Opened by gucedac about 3 years ago

#630 - minced ID-tag removal

Issue - State: open - Opened by ohickl over 3 years ago

#629 - unable to install prokka using conda or brew

Issue - State: closed - Opened by dhiru16 over 3 years ago

#628 - Error running prokka

Issue - State: open - Opened by huseyintas over 3 years ago

#627 - error while running Prokka

Issue - State: open - Opened by shashank-KU over 3 years ago - 1 comment

#626 - mapping of Prokka annotated genome is 0%

Issue - State: open - Opened by parulbaranwal over 3 years ago

#625 - Update README.md

Pull Request - State: open - Opened by aboffin over 3 years ago - 2 comments

#624 - CDS labels do not match

Issue - State: open - Opened by hayleyjaywilson over 3 years ago - 2 comments

#623 - Annotated genes that are not there

Issue - State: open - Opened by AnaAndrews over 3 years ago