Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / tseemann/prokka issues and pull requests

#681 - error in prediction of CDS, a lot of sequences

Issue - State: open - Opened by adolfoisla 9 months ago

#680 - Report Bug on WSL Ubuntu

Issue - State: open - Opened by ruqaiyatasneem 10 months ago

#679 - Prokka install fails because Aragorn website is down.

Issue - State: open - Opened by ranitori 10 months ago - 2 comments

#676 - Coult not parse version from '885915 885915'

Issue - State: open - Opened by JCSigala 12 months ago

#674 - fasta headers different between *.fna and *.faa file

Issue - State: closed - Opened by bheimbu 12 months ago

#673 - Prokka run Error

Issue - State: closed - Opened by marianajeeb about 1 year ago

#672 - Is Prokka being maintained?

Issue - State: open - Opened by tarunaaggarwal about 1 year ago

#671 - Using amino acid fasta files as input

Issue - State: open - Opened by SanchitaKamath about 1 year ago

#670 - Date format in gbk file generated from fasta file

Issue - State: open - Opened by JipengLuo about 1 year ago

#669 - tbl2asn issues, again (in a M1 Macbook)

Issue - State: open - Opened by anbadilla about 1 year ago - 4 comments

#668 - Prokka empty and temporary output files

Issue - State: open - Opened by dsbard over 1 year ago

#667 - prokka issues. Please how do I fix this?

Issue - State: open - Opened by chimaobi2000 over 1 year ago - 1 comment

#665 - installing issues

Issue - State: closed - Opened by prabinshtha over 1 year ago - 1 comment

#664 - Can I generate COG categories in the gbk file?

Issue - State: open - Opened by qkqk-hub over 1 year ago

#662 - Convert Travis CI to Github Actions

Pull Request - State: open - Opened by rpetit3 over 1 year ago

#661 - Space missing in GenBank annotation file

Issue - State: open - Opened by etd530 over 1 year ago

#659 - Error when annotating big assemblies file.

Issue - State: open - Opened by RunJiaJi over 1 year ago

#658 - Output file is merging Locus name with length

Issue - State: open - Opened by arbujold over 1 year ago

#657 - Total of 8 + 46 != 53 tRNA + rRNA features ?

Issue - State: closed - Opened by cmkobel over 1 year ago - 1 comment

#655 - Number of tRNA

Issue - State: closed - Opened by ElsaMMendes over 1 year ago

#654 - Issue with installing conda environment in docker container

Issue - State: closed - Opened by colin-heberling over 1 year ago - 4 comments

#653 - tbl2asn Problem

Issue - State: open - Opened by fkessner over 1 year ago - 4 comments

#650 - Prokka Stopped: Cannot call method next result

Issue - State: open - Opened by KFWins2022 almost 2 years ago - 1 comment

#649 - Update READEME.md

Pull Request - State: open - Opened by huoww07 almost 2 years ago

#647 - CRISPR differences in statistics txt file

Issue - State: open - Opened by ireneortega almost 2 years ago

#646 - Problem wih tbl2asn

Issue - State: open - Opened by franzilie almost 2 years ago - 5 comments

#645 - How to annotate with custom database alone?

Issue - State: open - Opened by dineshkumarsrk almost 2 years ago - 1 comment

#644 - What does the "het" says?

Issue - State: closed - Opened by fredericQC about 2 years ago - 1 comment

#643 - Preserving prodigal naming in fasta headers

Issue - State: open - Opened by nschan about 2 years ago

#642 - Can't find required 'find' in your $PATH

Issue - State: open - Opened by junejbkim95 about 2 years ago - 1 comment

#641 - file is not a readable non-empty FASTA file (OS: Linux mint, not WSL)

Issue - State: open - Opened by Silverfoxcome about 2 years ago - 1 comment

#640 - HMM not indexed

Issue - State: open - Opened by btredcup about 2 years ago - 1 comment

#639 - bioperl version comparaison :: problem.

Issue - State: open - Opened by EricDeveaud about 2 years ago - 1 comment

#638 - prokka issue with blast2- executing singularity

Issue - State: open - Opened by anugos over 2 years ago - 1 comment

#637 - Problems with annotations

Issue - State: open - Opened by manalcric over 2 years ago

#634 - installation issue

Issue - State: open - Opened by alessiaartusi over 2 years ago - 7 comments

#632 - Can't run prokka v1.13 with blastp v2.12

Issue - State: closed - Opened by noisrevni over 2 years ago - 2 comments

#631 - Getting just the structural annotation

Issue - State: open - Opened by gucedac over 2 years ago

#630 - minced ID-tag removal

Issue - State: open - Opened by ohickl over 2 years ago

#629 - unable to install prokka using conda or brew

Issue - State: closed - Opened by dhiru16 over 2 years ago

#628 - Error running prokka

Issue - State: open - Opened by huseyintas over 2 years ago

#627 - error while running Prokka

Issue - State: open - Opened by shashank-KU over 2 years ago - 1 comment

#626 - mapping of Prokka annotated genome is 0%

Issue - State: open - Opened by parulbaranwal over 2 years ago

#625 - Update README.md

Pull Request - State: open - Opened by aboffin over 2 years ago - 2 comments

#624 - CDS labels do not match

Issue - State: open - Opened by hayleyjaywilson over 2 years ago - 2 comments

#623 - Annotated genes that are not there

Issue - State: open - Opened by AnaAndrews over 2 years ago

#622 - Improve lists of Rfam domain-specific models

Issue - State: open - Opened by AntonPetrov over 2 years ago

#621 - Problem of Output Files

Issue - State: open - Opened by Chauncy-Fang over 2 years ago

#620 - Unable to locate some packages

Issue - State: open - Opened by unnatiaggarwalsmile over 2 years ago - 1 comment

#619 - Use the version module to parse Bioperl version strings

Pull Request - State: open - Opened by prehensilecode over 2 years ago

#618 - Error Prokka and Roary

Issue - State: open - Opened by sekhwal over 2 years ago

#617 - Prokka error

Issue - State: open - Opened by sekhwal over 2 years ago - 11 comments

#616 - Prokka running error

Issue - State: open - Opened by sekhwal over 2 years ago - 2 comments

#615 - Conda install work around

Issue - State: open - Opened by samche42 over 2 years ago - 2 comments

#614 - Issue calling Hmmer when running Prokka

Issue - State: open - Opened by skbrimer over 2 years ago - 2 comments

#613 - Problem with databas

Issue - State: open - Opened by H440775h over 2 years ago

#612 - Plasmid Annotations

Issue - State: open - Opened by Javaria-Ashraf over 2 years ago - 1 comment

#611 - Link `--proteins` section of manual to `fasta-db-format` section

Pull Request - State: open - Opened by 0xaf1f over 2 years ago - 1 comment

#609 - Unnamed/uncharacterized genes are not annotated as expected

Issue - State: open - Opened by ReganDM over 2 years ago

#608 - prokka install issue with M1 mac processor using homebrew - miniforge

Issue - State: open - Opened by beherrm over 2 years ago - 7 comments

#607 - Running prokka-genbank_to_fasta_db on new genbank format

Issue - State: open - Opened by emmannaemeka over 2 years ago - 1 comment

#606 - Where to obtain gene length from reference sequences?

Issue - State: closed - Opened by miguelsemedobb almost 3 years ago

#605 - usegenus but no genus

Issue - State: open - Opened by EllistonV almost 3 years ago

#604 - prokka signalp

Issue - State: open - Opened by Gao-Lei-Xinjiang almost 3 years ago

#602 - Manual installation of database

Issue - State: open - Opened by Bibi888 almost 3 years ago

#599 - prokka setup db

Issue - State: open - Opened by annavet almost 3 years ago - 2 comments

#598 - Bio::SearchIO: hmmer3 cannot be found

Issue - State: open - Opened by yzhzu almost 3 years ago - 6 comments

#593 - bioperl v1.7.8 kills the prokka 🐿🔫

Issue - State: open - Opened by lskatz about 3 years ago - 1 comment

#582 - Four extra unexpected output files with prefix 'protein.XXX'....

Issue - State: closed - Opened by RunJiaJi about 3 years ago - 2 comments
Labels: bug

#577 - error of minced to run prokka

Issue - State: open - Opened by huiluocao about 3 years ago - 3 comments

#576 - prokka output files for gene quantification

Issue - State: closed - Opened by khemlalnirmalkar over 3 years ago - 6 comments
Labels: question, assume_resolved, metagenome

#558 - Incorrect annotations from custom database

Issue - State: open - Opened by jellila over 3 years ago - 1 comment

#557 - initialization of Vm error

Issue - State: open - Opened by nanzhen102 over 3 years ago - 1 comment

#554 - ncRNA prediction does not work

Issue - State: open - Opened by Ekie22 over 3 years ago - 2 comments

#549 - blastp version issue

Issue - State: closed - Opened by Ankita-1211 over 3 years ago - 4 comments

#544 - check blast version fails due to v2.10 which is recognized as <2.2

Issue - State: open - Opened by uloeber almost 4 years ago - 7 comments

#542 - date format in gbk file

Issue - State: closed - Opened by fetyj almost 4 years ago - 9 comments

#532 - blastp version number comparison error

Issue - State: closed - Opened by CuriousTim almost 4 years ago - 3 comments

#520 - Can prokka annotate only from --protein file?

Issue - State: open - Opened by Zazgah about 4 years ago - 6 comments