Ecosyste.ms: Issues

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GitHub / tripal/tripal_galaxy issues and pull requests

#100 - fix undefined offset error on job queue page

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 1 comment

#99 - Uncaught exception in exposed API method

Issue - State: closed - Opened by NicHerndon over 6 years ago - 14 comments
Labels: help wanted

#98 - Display annotation with markup component

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 4 comments

#97 - Tripal Galaxy API Additions

Issue - State: closed - Opened by shawnawsu over 6 years ago - 3 comments
Labels: enhancement

#96 - fix default value issues for conditional inputs

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 5 comments

#95 - 7.x 1.x 66 unavailable server

Pull Request - State: closed - Opened by shawnawsu over 6 years ago - 1 comment

#94 - We need to backport the user quote system to Tv2

Issue - State: closed - Opened by spficklin over 6 years ago - 1 comment

#94 - We need to backport the user quote system to Tv2

Issue - State: closed - Opened by spficklin over 6 years ago - 1 comment

#93 - 7.x 1.x 62 expired results

Pull Request - State: closed - Opened by shawnawsu over 6 years ago

#93 - 7.x 1.x 62 expired results

Pull Request - State: closed - Opened by shawnawsu over 6 years ago

#92 - Create LICENSE (GPL2 to match core)

Pull Request - State: closed - Opened by mestato over 6 years ago - 1 comment

#91 - Disable import expose workflow

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 2 comments
Labels: waiting on submitter

#91 - Disable import expose workflow

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 2 comments
Labels: waiting on submitter

#90 - Hidden input type

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 3 comments
Labels: waiting on submitter

#90 - Hidden input type

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 3 comments
Labels: waiting on submitter

#89 - Display error message when no workflows in galaxy

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago

#88 - Group fixed value inputs

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 4 comments
Labels: waiting on submitter

#88 - Group fixed value inputs

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 4 comments
Labels: waiting on submitter

#87 - Use label as data input step title

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 2 comments
Labels: waiting on submitter

#87 - Use label as data input step title

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 2 comments
Labels: waiting on submitter

#86 - Revert "Optional settings fieldset"

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago

#86 - Revert "Optional settings fieldset"

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago

#85 - Advanced options component

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 1 comment

#84 - When the value of an [Advanced Options] component is [Hide Advanced Options]

Issue - State: closed - Opened by MingChen0919 over 6 years ago - 2 comments

#84 - When the value of an [Advanced Options] component is [Hide Advanced Options]

Issue - State: closed - Opened by MingChen0919 over 6 years ago - 2 comments

#83 - Empty optional settings fieldset

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 2 comments

#83 - Empty optional settings fieldset

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 2 comments

#82 - Non editable inputs in optional settings fieldset

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 3 comments

#81 - optional settings fieldset has non-editable fields

Issue - State: closed - Opened by MingChen0919 over 6 years ago - 1 comment

#80 - Optional settings fieldset

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago

#80 - Optional settings fieldset

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago

#79 - Display help message from tool inputs

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago

#79 - Display help message from tool inputs

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago

#78 - Disable export/import workflow

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 1 comment

#78 - Disable export/import workflow

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago - 1 comment

#77 - get workflow annotation from galaxy directly

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago

#77 - get workflow annotation from galaxy directly

Pull Request - State: closed - Opened by MingChen0919 over 6 years ago

#76 - This link has expired. Please reload the job results page for uploaded links.

Issue - State: closed - Opened by MingChen0919 over 6 years ago - 6 comments
Labels: bug, release-blocker, PR Submitted

#75 - Fix 39

Pull Request - State: closed - Opened by almasaeed2010 over 6 years ago

#75 - Fix 39

Pull Request - State: closed - Opened by almasaeed2010 over 6 years ago

#74 - Fix issue #71

Pull Request - State: closed - Opened by almasaeed2010 over 6 years ago - 1 comment

#74 - Fix issue #71

Pull Request - State: closed - Opened by almasaeed2010 over 6 years ago - 1 comment

#73 - Limit file size

Issue - State: closed - Opened by mestato over 6 years ago - 3 comments

#72 - Fix 71

Pull Request - State: closed - Opened by MingChen0919 almost 7 years ago

#70 - Fix issue #48

Pull Request - State: closed - Opened by almasaeed2010 almost 7 years ago

#70 - Fix issue #48

Pull Request - State: closed - Opened by almasaeed2010 almost 7 years ago

#69 - A fix for issue #53

Pull Request - State: closed - Opened by almasaeed2010 almost 7 years ago

#68 - Pre-populate webform before submitting

Issue - State: closed - Opened by spficklin almost 7 years ago - 1 comment

#68 - Pre-populate webform before submitting

Issue - State: closed - Opened by spficklin almost 7 years ago - 1 comment

#67 - Consider moving file management tool to Tripal

Issue - State: closed - Opened by spficklin almost 7 years ago - 3 comments
Labels: release-blocker

#67 - Consider moving file management tool to Tripal

Issue - State: closed - Opened by spficklin almost 7 years ago - 3 comments
Labels: release-blocker

#66 - Disable Galaxy Instance & Workflows

Issue - State: closed - Opened by spficklin almost 7 years ago
Labels: release-blocker

#66 - Disable Galaxy Instance & Workflows

Issue - State: closed - Opened by spficklin almost 7 years ago
Labels: release-blocker

#65 - Adding users to a galaxy server

Issue - State: closed - Opened by cwytko almost 7 years ago - 3 comments
Labels: help wanted, question, wontfix, User

#65 - Adding users to a galaxy server

Issue - State: closed - Opened by cwytko almost 7 years ago - 3 comments
Labels: help wanted, question, wontfix, User

#64 - User file association

Issue - State: closed - Opened by cwytko almost 7 years ago - 4 comments
Labels: File Issue, User

#64 - User file association

Issue - State: closed - Opened by cwytko almost 7 years ago - 4 comments
Labels: File Issue, User

#63 - Distinct Users when submitting a published workflow

Issue - State: closed - Opened by cwytko almost 7 years ago - 2 comments
Labels: release-blocker, User

#62 - Expiration of Galaxy results leaves dangling "View Results" links

Issue - State: closed - Opened by mestato almost 7 years ago - 2 comments
Labels: release-blocker

#61 - tripal_html5_file_process

Issue - State: closed - Opened by gdroc almost 7 years ago - 6 comments

#60 - webform for hisat2 alignment workflow is not correct

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 4 comments
Labels: bug, waiting on submitter

#59 - workflow status info not showing on job queue table

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 2 comments
Labels: bug, waiting on submitter

#58 - can't delete galaxy servers

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 1 comment
Labels: bug

#57 - need to annotate and export webform by directly editing webform components

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 6 comments
Labels: enhancement, waiting on submitter

#56 - need to check if the submission id exists before invoking the workflow

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 1 comment
Labels: bug

#55 - Can't launch workflow

Issue - State: closed - Opened by NicHerndon almost 7 years ago - 2 comments
Labels: help wanted, waiting on submitter

#54 - missing descriptions in several fields of tool rmarkdown_fastqc_report v2.0.0

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 4 comments
Labels: high priority

#53 - text flow out out the fieldset name area

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 4 comments
Labels: waiting on submitter

#52 - error occurs when clicking 'Previous page' from Preview step

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 3 comments
Labels: bug, release-blocker

#51 - mismatch between galaxy tool xml and tripal webform for tool flagstat v2.0.1

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 8 comments
Labels: high priority

#50 - FIX tripal_galaxy_build_webform_add_component

Issue - State: closed - Opened by cwytko almost 7 years ago
Labels: bug

#49 - Allow Clickable Steps to Workflow Re runs

Issue - State: closed - Opened by cwytko almost 7 years ago - 1 comment
Labels: enhancement, wontfix

#48 - Galaxy User Permissions Broken

Issue - State: closed - Opened by mestato almost 7 years ago - 4 comments
Labels: bug, release-blocker, waiting on submitter

#47 - Delete Galaxy Workflow Input file on Invoke

Issue - State: closed - Opened by cwytko almost 7 years ago - 1 comment
Labels: enhancement, wontfix, File Issue

#46 - Check tripal galaxy module permission section

Issue - State: closed - Opened by cwytko almost 7 years ago

#45 - Get rid of duplicate files uploaded to Galaxy

Issue - State: closed - Opened by cwytko almost 7 years ago - 1 comment
Labels: duplicate, File Issue

#44 - Previously 'user uploaded files' on tripal side are reuploaded galaxy side

Issue - State: closed - Opened by cwytko almost 7 years ago - 1 comment
Labels: duplicate, File Issue

#43 - Check user functionalities with tripal_galaxy

Issue - State: closed - Opened by cwytko almost 7 years ago
Labels: enhancement

#42 - Automatically add Users from Tripal to Galaxy

Issue - State: closed - Opened by cwytko almost 7 years ago - 1 comment
Labels: enhancement

#41 - fix selected table not showing error

Pull Request - State: closed - Opened by MingChen0919 almost 7 years ago

#40 - error when adding a site wide file

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 1 comment

#39 - Some files on the drop down list of "User Uploaded Files" field don't exist, which causes an error

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 4 comments
Labels: bug, release-blocker

#38 - Call to undefined function dpm() error when adding workflow

Issue - State: closed - Opened by NicHerndon almost 7 years ago - 4 comments
Labels: question

#37 - checking status of workflow

Issue - State: closed - Opened by spficklin almost 7 years ago - 1 comment
Labels: bug

#36 - error when adding some workflows

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 3 comments
Labels: bug

#35 - `Undefined index: name` error when importing some workflows

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 3 comments
Labels: duplicate, waiting on submitter

#34 - missing chunks error when uploading big files (~5G)

Issue - State: closed - Opened by MingChen0919 almost 7 years ago - 13 comments
Labels: File Issue

#33 - history_content['content_link'] issue

Issue - State: closed - Opened by MingChen0919 about 7 years ago - 2 comments
Labels: bug, waiting on submitter

#32 - Error at trp-run-jobs never updates workflow status

Issue - State: closed - Opened by mestato about 7 years ago - 3 comments
Labels: bug, waiting on submitter

#31 - Use Galaxy Data Libraries?

Issue - State: closed - Opened by mestato about 7 years ago - 6 comments
Labels: enhancement, question

#30 - fix history_content['content_link'] issue

Pull Request - State: closed - Opened by MingChen0919 about 7 years ago - 1 comment

#29 - Deleting Galaxy Instance

Issue - State: closed - Opened by mestato about 7 years ago - 4 comments
Labels: bug

#28 - tripal data collection problem

Issue - State: closed - Opened by mestato about 7 years ago - 8 comments
Labels: bug, waiting on submitter

#27 - Galaxy Workflow Run Lifespan

Issue - State: closed - Opened by spficklin about 7 years ago - 1 comment
Labels: enhancement, release-blocker

#26 - A webform field that allows for uploading all types of files is needed

Issue - State: closed - Opened by MingChen0919 about 7 years ago - 13 comments
Labels: bug

#25 - label-value mismatch issue for boolean input fields.

Issue - State: closed - Opened by MingChen0919 about 7 years ago - 7 comments
Labels: bug

#24 - Workflows being marked as deprecated

Issue - State: closed - Opened by spficklin about 7 years ago - 1 comment
Labels: release-blocker

#23 - support fastq file with extension `.fq`.

Issue - State: closed - Opened by MingChen0919 about 7 years ago - 7 comments