tripal/tripal_analysis_expression issues and pull requests

#438 - Fix incorrect case for obi CV; add update hook

Pull Request - State: closed - Opened by dsenalik about 1 month ago

#437 - Case error with OBI vs. obi for p-value term

Issue - State: open - Opened by dsenalik about 1 month ago
Labels: bug

#436 - Issue 430 add weights to insure correct order of javascript loading

Pull Request - State: closed - Opened by dsenalik over 1 year ago
Labels: bug

#435 - Issue 434 Use fputcsv to properly escape when needed

Pull Request - State: closed - Opened by dsenalik over 1 year ago

#434 - Improper export of expression data for biomaterial with comma in its name

Issue - State: closed - Opened by dsenalik over 1 year ago - 1 comment
Labels: bug, PR submitted

#433 - Issue 432 chado expression data loader

Pull Request - State: closed - Opened by dsenalik over 1 year ago
Labels: PHP8

#432 - PHP8 error with "Chado Expression Data Loader"

Issue - State: closed - Opened by dsenalik over 1 year ago
Labels: bug, PR submitted, PHP8

#431 - Issue 430 fixes to download

Pull Request - State: closed - Opened by dsenalik over 1 year ago

#430 - The heatmap cannot be displayed, and the expression data cannot be downloaded.

Issue - State: closed - Opened by guichenzhu over 1 year ago - 35 comments
Labels: bug, help wanted, PR submitted

#429 - 423 whitespace and typos

Pull Request - State: closed - Opened by dsenalik almost 2 years ago

#428 - expression module

Issue - State: open - Opened by hcj131518 about 2 years ago

#427 - Issue 426 feature_cvtermprop value not always an integer

Pull Request - State: closed - Opened by dsenalik about 2 years ago

#426 - local__expression_details field assumes feature_cvtermprop value is an integer

Issue - State: closed - Opened by dsenalik about 2 years ago - 1 comment
Labels: bug, PR submitted

#425 - 424 functional changes

Pull Request - State: closed - Opened by dsenalik over 2 years ago - 1 comment

#424 - Functional changes for loaders

Issue - State: closed - Opened by dsenalik over 2 years ago - 1 comment
Labels: bug, PR submitted

#423 - Minor changes and typos

Issue - State: closed - Opened by dsenalik over 2 years ago - 1 comment
Labels: enhancement, PR submitted

#422 - Move up initialization of [0]['value'], issue #421

Pull Request - State: closed - Opened by dsenalik over 2 years ago - 1 comment

#421 - Error with data__gene_expression_data field if no expression data

Issue - State: closed - Opened by dsenalik over 2 years ago - 1 comment
Labels: bug, PR submitted, PHP8

#420 - Issue #419 sql returns only organisms with expression data

Pull Request - State: closed - Opened by dsenalik over 2 years ago - 2 comments

#419 - Expression Heatmap form lists all organisms, should list only those with expression data

Issue - State: closed - Opened by dsenalik over 2 years ago - 1 comment
Labels: enhancement, PR submitted

#418 - Issue #417 ignore Id tags that are not a db

Pull Request - State: closed - Opened by dsenalik over 2 years ago - 1 comment

#417 - Steps 8 and 10 are trying to generate dbxref for ontology term

Issue - State: closed - Opened by dsenalik over 2 years ago - 2 comments

#416 - Issue #415 name vs. harmonizedname

Pull Request - State: closed - Opened by dsenalik over 2 years ago - 1 comment

#415 - Issue with Name vs. HarmonizedName arising from pull #411

Issue - State: closed - Opened by dsenalik over 2 years ago - 2 comments

#414 - Correct missed db name changes, issue #413

Pull Request - State: closed - Opened by dsenalik over 2 years ago - 1 comment

#413 - Residual db name changes missed in pull #411

Issue - State: closed - Opened by dsenalik over 2 years ago - 1 comment

#412 - Check these Functions

Issue - State: closed - Opened by spficklin over 2 years ago - 2 comments

#411 - Updated biosample importer namespace

Pull Request - State: closed - Opened by dsenalik over 2 years ago - 8 comments

#410 - Repair problem with sep__biological_sample widget

Pull Request - State: closed - Opened by dsenalik over 2 years ago - 1 comment

#409 - Hard-coded tissue/treatment terms in biomaterial

Issue - State: open - Opened by spficklin over 2 years ago

#408 - Issue 407 changes just to sep__biological_sample field

Pull Request - State: closed - Opened by dsenalik over 2 years ago - 10 comments

#407 - Fields don't follow design requirements

Issue - State: open - Opened by spficklin over 2 years ago - 2 comments

#406 - Issue 405 extend Biosample Browser sep__biological_sample field to Project

Pull Request - State: closed - Opened by dsenalik over 2 years ago - 1 comment

#405 - Use the sep__biological_sample "Biosample Browser" tripal field on Projects

Issue - State: closed - Opened by dsenalik over 2 years ago - 1 comment

#404 - Remove Composer files

Pull Request - State: closed - Opened by spficklin over 2 years ago - 1 comment

#403 - Fixes for gene_expression_data field

Pull Request - State: closed - Opened by spficklin over 2 years ago - 1 comment

#402 - The data__gene_expression_data needs reworking for web services.

Issue - State: closed - Opened by spficklin over 2 years ago - 1 comment
Labels: PR submitted

#401 - Error Populating the expression_feature MView

Issue - State: open - Opened by spficklin over 2 years ago

#400 - Expression Data Viewer too big

Issue - State: closed - Opened by spficklin over 2 years ago - 1 comment
Labels: PR submitted

#399 - Bump url-parse from 1.4.4 to 1.5.10 in /tripal_analysis_expression/theme/build

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#398 - Expression data field crashes gene page

Issue - State: closed - Opened by spficklin over 2 years ago - 1 comment
Labels: PR submitted

#397 - Updated Expression Loader

Pull Request - State: closed - Opened by spficklin over 2 years ago - 1 comment

#396 - Expression Importer Uses SRA Experiment ID as Biosample

Issue - State: closed - Opened by spficklin over 2 years ago - 1 comment
Labels: PR submitted

#395 - Dependabot prs

Pull Request - State: closed - Opened by spficklin over 2 years ago - 1 comment

#394 - Expression loader is too slow

Issue - State: closed - Opened by spficklin over 2 years ago - 1 comment
Labels: PR submitted

#393 - Missing values not supported in Matrix format

Issue - State: open - Opened by spficklin over 2 years ago
Labels: PR submitted

#392 - Updated BioSample Importer

Pull Request - State: closed - Opened by spficklin over 2 years ago - 32 comments

#391 - Bump url-parse from 1.4.4 to 1.5.7 in /tripal_analysis_expression/theme/build

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#391 - Bump url-parse from 1.4.4 to 1.5.7 in /tripal_analysis_expression/theme/build

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#390 - Bump follow-redirects from 1.5.9 to 1.14.8 in /tripal_analysis_expression/theme/build

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#390 - Bump follow-redirects from 1.5.9 to 1.14.8 in /tripal_analysis_expression/theme/build

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#389 - Bump ajv from 6.10.0 to 6.12.6

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#389 - Bump ajv from 6.10.0 to 6.12.6

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#388 - Bump follow-redirects from 1.5.9 to 1.14.7 in /tripal_analysis_expression/theme/build

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#388 - Bump follow-redirects from 1.5.9 to 1.14.7 in /tripal_analysis_expression/theme/build

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#387 - Bump url-parse from 1.4.4 to 1.5.3 in /tripal_analysis_expression/theme/build

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#387 - Bump url-parse from 1.4.4 to 1.5.3 in /tripal_analysis_expression/theme/build

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#386 - SEP vocabulary is deprecated

Issue - State: open - Opened by spficklin about 3 years ago

#386 - SEP vocabulary is deprecated

Issue - State: open - Opened by spficklin about 3 years ago

#385 - Biosample loader is slow

Issue - State: closed - Opened by spficklin about 3 years ago - 1 comment
Labels: PR submitted

#384 - Biosample loader crashes browser

Issue - State: closed - Opened by spficklin about 3 years ago - 1 comment
Labels: PR submitted

#383 - Proposal for CV term selector for the biosample

Issue - State: closed - Opened by spficklin about 3 years ago - 2 comments
Labels: PR submitted

#382 - Fix for issue Biosample CSV importer

Pull Request - State: closed - Opened by spficklin about 3 years ago - 2 comments

#382 - Fix for issue Biosample CSV importer

Pull Request - State: closed - Opened by spficklin about 3 years ago - 2 comments

#381 - Biosample loader and CSV files.

Issue - State: closed - Opened by spficklin about 3 years ago - 1 comment
Labels: PR submitted