Ecosyste.ms: Issues

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GitHub / tripal/tripal_analysis_blast issues and pull requests

#48 - blast xml results/parsing not working (database not configured)

Issue - State: open - Opened by smriti-135 8 months ago - 2 comments

#47 - 46 tv3 php8 warnings

Pull Request - State: open - Opened by dsenalik almost 2 years ago

#46 - PHP8 Warnings

Issue - State: open - Opened by dsenalik almost 2 years ago - 2 comments

#45 - Issue #44 array_key_exists changed to property_exists

Pull Request - State: closed - Opened by dsenalik about 2 years ago
Labels: hacktoberfest-accepted

#44 - PHP8 errors

Issue - State: closed - Opened by dsenalik about 2 years ago - 1 comment

#43 - No XML loader for after enabling tripal blast analysis module

Issue - State: open - Opened by shmenolin over 3 years ago - 1 comment

#42 - Undefined index errors

Issue - State: open - Opened by spficklin over 3 years ago

#40 - loading blast tabulated results

Issue - State: closed - Opened by theBowja over 5 years ago - 12 comments

#39 - Database field is now required

Pull Request - State: closed - Opened by jwest60 over 5 years ago - 1 comment

#38 - Form database field not marked as required

Issue - State: closed - Opened by jwest60 over 5 years ago - 2 comments

#37 - Fix HTML issue

Pull Request - State: closed - Opened by almasaeed2010 over 5 years ago - 2 comments

#36 - View is munged when blast results added

Issue - State: closed - Opened by spficklin over 5 years ago - 2 comments

#35 - Databases list are not showing up

Issue - State: closed - Opened by almasaeed2010 over 5 years ago - 1 comment

#34 - Fix collapse fieldset script

Pull Request - State: closed - Opened by almasaeed2010 over 5 years ago - 3 comments

#33 - Fix continue in switch error

Pull Request - State: closed - Opened by almasaeed2010 over 5 years ago

#32 - create release

Issue - State: closed - Opened by bradfordcondon over 5 years ago

#31 - Continue in php 7.3

Issue - State: closed - Opened by almasaeed2010 over 5 years ago - 2 comments

#30 - module needs readme

Issue - State: closed - Opened by bradfordcondon almost 6 years ago - 1 comment

#29 - Fixes missing feature viewer & NCBI parsing results

Pull Request - State: closed - Opened by spficklin almost 6 years ago - 26 comments

#28 - regexp for hit Organism

Issue - State: closed - Opened by kyrenya almost 6 years ago - 3 comments
Labels: documentation

#27 - Make sure DB exists and fix typo

Pull Request - State: closed - Opened by almasaeed2010 about 6 years ago - 1 comment

#26 - if no hits for a gene the output is confusing

Issue - State: closed - Opened by bradfordcondon about 6 years ago - 7 comments
Labels: enhancement

#25 - Usage doc

Issue - State: closed - Opened by abretaud about 6 years ago - 2 comments
Labels: question

#24 - Fix install errors

Pull Request - State: closed - Opened by abretaud about 6 years ago - 1 comment

#23 - Fix term_vocabulary issue

Pull Request - State: closed - Opened by almasaeed2010 about 6 years ago - 4 comments

#22 - TripalImporter makes call to public.chado_analysis for nid

Issue - State: closed - Opened by bradfordcondon over 6 years ago - 1 comment

#21 - NCBI NR parser

Issue - State: closed - Opened by bradfordcondon over 6 years ago - 2 comments
Labels: enhancement, PR sumbitted

#20 - change default branch to 7.x-3.x

Issue - State: closed - Opened by bradfordcondon over 6 years ago - 8 comments

#19 - Fix error with tripal_load_bundle_entity

Pull Request - State: closed - Opened by abretaud over 6 years ago - 1 comment

#18 - Empty db_query() call

Issue - State: closed - Opened by almasaeed2010 almost 7 years ago - 1 comment

#17 - Fix Persistent DB Connections

Pull Request - State: closed - Opened by almasaeed2010 almost 7 years ago - 1 comment

#16 - Resolve update error

Pull Request - State: closed - Opened by bradfordcondon almost 7 years ago - 2 comments

#15 - Various fixes

Pull Request - State: closed - Opened by abretaud almost 7 years ago - 1 comment

#14 - Update link

Pull Request - State: closed - Opened by bradfordcondon about 7 years ago - 1 comment

#13 - BlastImporter Attempts to Find Node ID instead of Entity ID

Issue - State: closed - Opened by almasaeed2010 about 7 years ago - 1 comment

#12 - link needs updating in uploader form for database

Issue - State: closed - Opened by bradfordcondon about 7 years ago

#11 - Remove not noeeded quotation mark

Pull Request - State: closed - Opened by almasaeed2010 about 7 years ago - 1 comment

#10 - Error Installing 7.x-3.x

Issue - State: closed - Opened by almasaeed2010 about 7 years ago

#9 - Fix warning when hit_url is absent

Pull Request - State: closed - Opened by abretaud over 7 years ago - 3 comments

#8 - When tripal_ds is enabled field doesn't show alignment bars

Issue - State: closed - Opened by spficklin over 7 years ago - 14 comments
Labels: bug, PR sumbitted

#7 - Tripal v3 field has a few issues

Issue - State: open - Opened by spficklin over 7 years ago - 2 comments
Labels: on hold

#6 - Only add js and css on pages where it is needed

Pull Request - State: closed - Opened by abretaud about 8 years ago - 1 comment

#5 - Fix deprecated calls to tripal_analysis_get_property

Pull Request - State: closed - Opened by abretaud about 8 years ago - 2 comments

#4 - Add bio.js feature-viewer for visualization of alignments

Pull Request - State: closed - Opened by abretaud about 8 years ago - 2 comments

#3 - Replace deprecated call to sql_regcase

Pull Request - State: closed - Opened by abretaud over 8 years ago - 1 comment

#2 - fix missing theme warning

Pull Request - State: closed - Opened by abretaud over 8 years ago

#1 - Fix hsp discarded when on frame 0

Pull Request - State: closed - Opened by abretaud over 8 years ago - 2 comments