Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / tripal/tripal issues and pull requests
#1584 - Full Test Suite for ChadoStorage: Single Property Field
Pull Request -
State: closed - Opened by laceysanderson about 1 year ago
- 3 comments
Labels: Tripal 4, Group 9 - Automated Testing
#1583 - REVEAL: Adding the title Templates to the content type YAML
Pull Request -
State: closed - Opened by dsenalik about 1 year ago
- 7 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1582 - REVEAL: Fix Content Type listing
Pull Request -
State: closed - Opened by dsenalik about 1 year ago
- 1 comment
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀
#1581 - Debug level logging is not documented and has a gotchya
Issue -
State: closed - Opened by dsenalik about 1 year ago
- 3 comments
Labels: Tripal 3, Community - Discussion, PR Submitted, Tripal 4, Group 0 - General Maintenance
#1580 - Tripal Importer Plugin Submit Button
Issue -
State: closed - Opened by reynoldtan about 1 year ago
- 1 comment
Labels: bug - confirmed, Good First Issue, Tripal 4, Group 4 - Data Importing
#1579 - Tripal 4 importer logging enhancement
Issue -
State: closed - Opened by dsenalik about 1 year ago
- 2 comments
Labels: Tripal 4, Group 4 - Data Importing
#1578 - Tripal 4 ChadoAnalysisDefault field
Pull Request -
State: closed - Opened by dsenalik about 1 year ago
- 7 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1577 - Tripal 4 tripal logger string substitution not done in some cases
Pull Request -
State: closed - Opened by dsenalik about 1 year ago
- 2 comments
Labels: bug - confirmed, Tripal 4, Group 0 - General Maintenance, Easy PR Review 😀
#1576 - Tripal 4 tripal logger string substitution not done in some cases
Issue -
State: closed - Opened by dsenalik about 1 year ago
- 1 comment
Labels: bug - confirmed, Tripal 4, Group 0 - General Maintenance
#1575 - Expand automated docker build set to include images without Chado
Pull Request -
State: closed - Opened by laceysanderson about 1 year ago
- 1 comment
Labels: Tripal 4, Group 9 - Automated Testing
#1574 - Tripal 3 Fix php8.1 deprecations
Pull Request -
State: closed - Opened by dsenalik about 1 year ago
Labels: bug - confirmed, Tripal 3, Group 0 - General Maintenance, PHP8, Easy PR Review 😀
#1573 - Tripal 3 PHP 8.1 deprecation notices
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 3 comments
Labels: bug - confirmed, Tripal 3, Group 0 - General Maintenance, PHP8
#1572 - Docker builds are too restrictive for automated testing in extension modules
Issue -
State: closed - Opened by laceysanderson over 1 year ago
- 1 comment
Labels: Tripal 4, Group 9 - Automated Testing
#1571 - Cvterm autocomplete needs filter by cv
Issue -
State: closed - Opened by laceysanderson over 1 year ago
- 1 comment
Labels: PR Submitted, Good First Issue, Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado, Group 4 - Data Importing
#1570 - Tripal 4 issue1568 add missing legacy_ro.obo
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 6 comments
Labels: bug - confirmed, Tripal 4, Group 4 - Data Importing
#1569 - OBO Importer: Cannot find term: 'NCIT:C25693' when importing into 2nd chado schema
Issue -
State: open - Opened by laceysanderson over 1 year ago
- 1 comment
Labels: bug - potential, Group 4 - Data Importing
#1568 - OBO Importer: legacy_ro.obo does not exist or cannot be read.
Issue -
State: closed - Opened by laceysanderson over 1 year ago
- 2 comments
Labels: bug - confirmed, Good First Issue, Tripal 4, Group 4 - Data Importing
#1567 - REVEAL: Smaller Bug Fixes / Changes
Issue -
State: open - Opened by laceysanderson over 1 year ago
Labels: Group 0 - General Maintenance
#1566 - REVEAL: Fixes to the Content Terms creation
Issue -
State: open - Opened by laceysanderson over 1 year ago
Labels: Group 1 - Tripal Content Types | Terms | Fields
#1565 - REVEAL: Remove `bio_data` assumption from content types
Issue -
State: closed - Opened by laceysanderson over 1 year ago
- 3 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1564 - REVEAL: Fix Content Type listing
Issue -
State: closed - Opened by laceysanderson over 1 year ago
- 1 comment
Labels: PR Submitted, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1563 - REVEAL: Adding the title Templates to the content type YAML
Issue -
State: closed - Opened by laceysanderson over 1 year ago
- 2 comments
Labels: PR Submitted, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1562 - Tripal4 issue1561 fix parallel message
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: bug - confirmed, Tripal 4, Group 3 - Job Management, Easy PR Review 😀
#1561 - Tripal 4 drush trp-run-jobs --parallel does not take a parameter
Issue -
State: closed - Opened by dsenalik over 1 year ago
Labels: bug - confirmed, Good First Issue, Tripal 4, Group 3 - Job Management
#1560 - Tripal 4 - NCBI Taxonomy Loader
Pull Request -
State: closed - Opened by risharde over 1 year ago
- 7 comments
Labels: Tripal 4, Group 4 - Data Importing
#1559 - Tripal 4 php8 warning fix in OBO loader
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: Tripal 4, Group 4 - Data Importing, PHP8, Easy PR Review 😀
#1558 - Tripal 4 change hook invocation to module handler service
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: bug - confirmed, Tripal 4, Group 0 - General Maintenance
#1557 - Tripal 4 OBOImporter warnings under PHP8
Issue -
State: closed - Opened by dsenalik over 1 year ago
Labels: bug - confirmed, PR Submitted, Tripal 4, Group 4 - Data Importing, PHP8
#1556 - Tripal 4 Drupal 10: All hook invocation delegated to Module Handler service
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 2 comments
Labels: bug - confirmed, Tripal 4, Group 0 - General Maintenance
#1555 - Tripal 4 add a chado boolean field
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 3 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1554 - Project Autocomplete Controller
Pull Request -
State: closed - Opened by reynoldtan over 1 year ago
- 4 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1553 - Chado project autocomplete
Issue -
State: closed - Opened by reynoldtan over 1 year ago
- 1 comment
Labels: Community - Enhancement, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1552 - New infrastructure for Kernel Testing Chado Storage + Property Field Tests
Pull Request -
State: closed - Opened by laceysanderson over 1 year ago
- 2 comments
Labels: Tripal 4, Group 9 - Automated Testing
#1551 - Tripal 4 is missing chado_boolean_type field
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: PR Submitted, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1550 - Tripal 4: Implement some of the missing core fields and add to content types
Issue -
State: open - Opened by dsenalik over 1 year ago
- 8 comments
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields
#1549 - Dependency injection for Chado Storage + Storage Property Types/Values
Pull Request -
State: closed - Opened by laceysanderson over 1 year ago
- 1 comment
Labels: Tripal 4, Group 9 - Automated Testing
#1548 - Port tripal_version() api function and drush trp-version to Tripal 4
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 2 comments
Labels: Tripal 4, Group 0 - General Maintenance
#1547 - Tripal 4 change chado storage handling of empty fields
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 3 comments
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1546 - Kernel tests for Chado Storage
Issue -
State: closed - Opened by laceysanderson over 1 year ago
- 3 comments
Labels: Tripal 4, Group 9 - Automated Testing
#1545 - Tripal 4 tripal_report_error() is deprecated
Issue -
State: open - Opened by dsenalik over 1 year ago
Labels: Good First Issue, Group 0 - General Maintenance
#1544 - Tripal 4 chado storage validation error with form fields where null is allowed
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 3 comments
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1543 - Issue 1520 fix deprecated dynamic property
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: bug - confirmed, Tripal 4, Group 0 - General Maintenance, PHP8, Easy PR Review 😀
#1542 - Move Extensions into Tripal 4 Core
Issue -
State: open - Opened by spficklin over 1 year ago
Labels: Group 8 - Other Integrations
#1541 - Restructure Kernel Tests
Pull Request -
State: closed - Opened by laceysanderson over 1 year ago
- 2 comments
Labels: Tripal 4, Group 9 - Automated Testing
#1540 - tripal 3 issue 1538 local__contact widget ajax error fix
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields, PHP8, Easy PR Review 😀
#1539 - Test Directory Structure
Issue -
State: open - Opened by laceysanderson over 1 year ago
Labels: Group 9 - Automated Testing
#1538 - Tripal 3 ajax error in local__contact widget
Issue -
State: closed - Opened by dsenalik over 1 year ago
Labels: bug - confirmed, Tripal 3, Group 1 - Tripal Content Types | Terms | Fields, PHP8
#1537 - Tripal 4 port of tripal 3 chado_get_organism_id_from_scientific_name()
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 8 comments
Labels: Tripal 4, Group 0 - General Maintenance
#1536 - Port pull #1328 to Tripal 4
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: Tripal 4, Group 0 - General Maintenance
#1523 - Tripal 4 Drupal 10.1 compatibility
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 2 comments
Labels: bug - confirmed, Tripal 4, Group 9 - Automated Testing
#1522 - Remove use of \Drupal from Class settings in favour of dependency injection
Issue -
State: open - Opened by laceysanderson over 1 year ago
- 2 comments
Labels: Group 0 - General Maintenance
#1521 - Tripal 4 - Fix all the PHP 8.2 deprecations
Pull Request -
State: open - Opened by dsenalik over 1 year ago
- 1 comment
#1520 - Tripal 4 - Fix PHP 8.2 dynamic property deprecations
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 7 comments
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing, PHP8
#1519 - Adds a Dockerfile for PHP 8.2 and testing for Drupal 10.1.x
Pull Request -
State: open - Opened by laceysanderson over 1 year ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing, Easy PR Review 😀
#1518 - Tripal 4 error on "Tripal Content Terms" page
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 4 comments
Labels: bug - confirmed, PR Submitted, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1517 - Compatibility with Drupal 10.0 🎉 (and keeping 9.4 and 9.5)
Pull Request -
State: closed - Opened by laceysanderson over 1 year ago
- 5 comments
Labels: Release Blocker, Tripal 4, Group 0 - General Maintenance, Group 2 - Data Storage | Tripal DBX | Chado, Group 9 - Automated Testing
#1516 - install chado report SQL syntax error
Issue -
State: closed - Opened by jmzhuzhonghua over 1 year ago
- 3 comments
Labels: Community - Question, Tripal 4
#1515 - Tripal 4 - Publish Chado Content
Issue -
State: closed - Opened by Ferrisx4 over 1 year ago
- 3 comments
Labels: PR Submitted, Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado
#1514 - Unpublished/Deleted Items (e.g. organisms) still visible
Issue -
State: open - Opened by Ferrisx4 over 1 year ago
- 1 comment
Labels: bug - potential, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado
#1513 - Tripal 4 - NCBI Taxonomy and Newick Loader
Issue -
State: closed - Opened by risharde over 1 year ago
- 2 comments
Labels: Tripal 4, Group 4 - Data Importing
#1512 - Tripal 4 rename some remaining .inc files to .php - issue1502
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: bug - confirmed, Tripal 4, Group 0 - General Maintenance
#1511 - Remove deprecated functionality to move us closer to D10 support
Pull Request -
State: closed - Opened by laceysanderson over 1 year ago
- 1 comment
Labels: Tripal 4, Group 9 - Automated Testing, Easy PR Review 😀
#1510 - Get Tests to pass on Drupal 10
Issue -
State: closed - Opened by laceysanderson over 1 year ago
- 2 comments
Labels: Tripal 4, Group 9 - Automated Testing
#1509 - Tripal 4 update YAML for various missing fields
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1508 - Tv4g1 issue1507 fix pylotree typo
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀
#1507 - Tripal 4 yml typos
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 2 comments
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1506 - Remove default select from chado_get_organism_select_options()
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: Tripal 4, Group 0 - General Maintenance, Easy PR Review 😀
#1505 - Remove built-in "Select an organism" option from chado_get_organism_select_options()
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: PR Submitted, Good First Issue, Tripal 4, Group 0 - General Maintenance
#1504 - Tv4g1 issue1414 local data source field
Pull Request -
State: open - Opened by pdtouch over 1 year ago
- 4 comments
Labels: waiting on submitter, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1503 - Some API functions are still hardcoded to 'chado'
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: bug - confirmed, Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado
#1502 - All PHP files should end in `.php` for Drupal 9/10
Issue -
State: open - Opened by laceysanderson over 1 year ago
- 3 comments
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing
#1501 - Add a retry for failed requests to remote URLs
Issue -
State: open - Opened by dsenalik over 1 year ago
- 6 comments
Labels: bug - confirmed, Group 4 - Data Importing, Group 9 - Automated Testing
#1500 - Version number updates
Pull Request -
State: closed - Opened by spficklin over 1 year ago
Labels: Tripal 3, Easy PR Review 😀
#1499 - Update testing badge urls and other t4d8 references in the README
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: bug - confirmed, Tripal 4, Group 0 - General Maintenance, Easy PR Review 😀
#1498 - Tripal 4 chado_unabbreviate_infraspecific_rank (port tripal 3 pull 1244)
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 4 comments
Labels: Community - Enhancement, Tripal 4, Group 0 - General Maintenance, Group 2 - Data Storage | Tripal DBX | Chado
#1497 - Tripal 4 issue1496 fix old workflow versions
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 2 comments
Labels: bug - confirmed, Tripal 4, Group 4 - Data Importing, Group 9 - Automated Testing
#1496 - Tripal 4 testing badges do not work
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 3 comments
Labels: bug - confirmed, PR Submitted, Tripal 4, Group 9 - Automated Testing
#1495 - Issue 1414 local source data field for Analysis
Pull Request -
State: closed - Opened by pdtouch over 1 year ago
- 2 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1494 - Create ChadoLocalSourceDataFormatterDefault.php
Pull Request -
State: closed - Opened by pdtouch over 1 year ago
- 1 comment
#1493 - Create ChadoLocalSourceDataWidgetDefault.php
Pull Request -
State: closed - Opened by pdtouch over 1 year ago
- 1 comment
#1492 - Create ChadoLocalSourceDataDefault.php
Pull Request -
State: closed - Opened by pdtouch over 1 year ago
- 1 comment
#1491 - Create ChadoLocalSourceDataWidgetDefault.php
Pull Request -
State: closed - Opened by pdtouch over 1 year ago
#1490 - Create ChadoLocalSourceDataDefault.php
Pull Request -
State: closed - Opened by pdtouch over 1 year ago
- 1 comment
#1489 - Tv4 merge tripal3 pull 1369 gff loader changes
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
Labels: Tripal 4, Group 4 - Data Importing
#1488 - Tripal 4 - FASTA loader
Pull Request -
State: closed - Opened by risharde over 1 year ago
- 8 comments
Labels: Tripal 4, Group 4 - Data Importing
#1487 - Issue 1318 Add autocompletes for upcoming chado_linker module
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
Labels: Community - Enhancement, Tripal 3, Group 1 - Tripal Content Types | Terms | Fields, PHP8
#1486 - Chado CV Term Autocomplete Functionality
Pull Request -
State: closed - Opened by reynoldtan over 1 year ago
- 1 comment
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado
#1485 - Port pull #1244 to Tripal 4
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: PR Submitted, Tripal 4, Group 0 - General Maintenance
#1484 - Tv4g4 issue1483 organism lists for select
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: Tripal 4, Group 4 - Data Importing, Easy PR Review 😀
#1483 - Port pull #1311 to Tripal 4
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 8 comments
Labels: PR Submitted, Tripal 4, Group 4 - Data Importing
#1482 - Chado cvterm autocomplete
Issue -
State: closed - Opened by laceysanderson over 1 year ago
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado
#1481 - Tripal 4 additional type field bug with "term_name"
Issue -
State: closed - Opened by dsenalik over 1 year ago
- 2 comments
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields
#1480 - Update Dockerfile-php8-pgsql13
Pull Request -
State: closed - Opened by pdtouch over 1 year ago
- 3 comments
Labels: Community - Enhancement, Tripal 4, Group 0 - General Maintenance, Easy PR Review 😀
#1479 - Update Dockerfile-php8.1-pgsql13
Pull Request -
State: closed - Opened by pdtouch over 1 year ago
- 1 comment
Labels: Community - Enhancement, Tripal 4, Group 0 - General Maintenance, Easy PR Review 😀
#1478 - Change Automated PHPunit testing workflow to be triggered on pull requests
Pull Request -
State: closed - Opened by laceysanderson over 1 year ago
- 4 comments
Labels: Tripal 4, Group 9 - Automated Testing
#1477 - Phpunit workflows not running on PRs from a forked repo
Issue -
State: closed - Opened by laceysanderson over 1 year ago
- 3 comments
#1476 - Update Dockerfile-php8.1-pgsql13
Pull Request -
State: closed - Opened by pdtouch over 1 year ago
- 6 comments
Labels: Community - Enhancement, Tripal 4, Group 0 - General Maintenance, Easy PR Review 😀
#1475 - Redo of "Content Types and Fields defined by YAML" focused on minimal changes
Pull Request -
State: closed - Opened by laceysanderson over 1 year ago
- 2 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀
#1474 - Tripal 4 Issue 1472 $form_state bugfix
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: bug - confirmed, Tripal 4, Group 4 - Data Importing, Easy PR Review 😀
#1473 - Tv4g4 issue1472 form state bug - Abandoned, wrong starting branch
Pull Request -
State: closed - Opened by dsenalik over 1 year ago
- 1 comment
Labels: wontfix