tripal/tripal issues and pull requests

#1982 - Update Tripal Layout to support configuring the Form Display

Pull Request - State: open - Opened by laceysanderson 11 days ago
Labels: Group 7 - Page Display, Priority - High

#1981 - add path alias to tripal entity base class

Pull Request - State: open - Opened by dsenalik 11 days ago
Labels: Follow-up Needed, Group 1 - Tripal Content Types | Terms | Fields

#1980 - Fix the creation of duplicate aliases every time an entity is edited

Pull Request - State: closed - Opened by dsenalik 11 days ago - 1 comment
Labels: Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀, Priority - Medium

#1979 - Contact content type uses local:contact instead of Communication Contact term

Issue - State: open - Opened by dsenalik 14 days ago
Labels: Group 1 - Tripal Content Types | Terms | Fields, Priority - Low

#1978 - Update ChadoProperty Text widget to support filtered HTML

Pull Request - State: closed - Opened by laceysanderson 19 days ago - 2 comments
Labels: Group 1 - Tripal Content Types | Terms | Fields, Priority - High

#1977 - Publish update - no drupal records when no chado records

Pull Request - State: open - Opened by dsenalik 20 days ago
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields, Priority - Medium

#1976 - TripalContent listing is not filterable

Issue - State: open - Opened by laceysanderson 20 days ago
Labels: Group 1 - Tripal Content Types | Terms | Fields, Group 5 - Search | ElasticSearch | Views, Priority - High

#1975 - Reload/Sync button on Tripal Content pages

Issue - State: open - Opened by laceysanderson 20 days ago
Labels: Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1974 - ChadoProperty field needs to be able to support formatted text

Issue - State: closed - Opened by laceysanderson 20 days ago
Labels: Group 1 - Tripal Content Types | Terms | Fields, Priority - High

#1973 - Multiple URL alias' for Tripal Content pages

Issue - State: open - Opened by laceysanderson 20 days ago - 2 comments
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields, Priority - Medium

#1971 - configurable mechanism for hiding fields when they have an "empty" value

Pull Request - State: open - Opened by dsenalik 22 days ago
Labels: Group 1 - Tripal Content Types | Terms | Fields, Group 7 - Page Display, Priority - Medium

#1970 - Empty Values for Boolean + Integer

Issue - State: open - Opened by laceysanderson 26 days ago - 1 comment
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields, Group 7 - Page Display

#1969 - Add a field display setting to hide "empty" values

Issue - State: closed - Opened by dsenalik 26 days ago - 1 comment
Labels: Group 1 - Tripal Content Types | Terms | Fields, Group 7 - Page Display

#1968 - Ensure TripalFields can be added through UI and add some tests

Pull Request - State: closed - Opened by laceysanderson 27 days ago - 2 comments
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields, Group 9 - Automated Testing, Easy PR Review 😀

#1967 - Provide validation for already-used field terms

Pull Request - State: closed - Opened by dsenalik 29 days ago - 2 comments
Labels: Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀, Priority - Medium

#1966 - Tripal (not chado) fields can't be added

Issue - State: closed - Opened by dsenalik 29 days ago - 1 comment
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields

#1965 - Handle inline template and link for HTML replacements in the title

Pull Request - State: closed - Opened by laceysanderson about 1 month ago - 1 comment
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields

#1964 - HTML in title PR not comptible with Drupal Relationships field

Issue - State: closed - Opened by laceysanderson about 1 month ago
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields

#1963 - TripalEntity needs to have the URL alias base field added to better support URL alias'

Issue - State: open - Opened by laceysanderson about 1 month ago
Labels: Group 1 - Tripal Content Types | Terms | Fields

#1962 - Fix dbxref "Add another item" bug

Pull Request - State: closed - Opened by dsenalik about 1 month ago - 3 comments
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀, Priority - High

#1961 - Dbxref "Add another item" bug

Issue - State: closed - Opened by dsenalik about 1 month ago
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields, Priority - High

#1960 - Publication Importer Version 5

Pull Request - State: open - Opened by risharde about 1 month ago - 3 comments
Labels: Group 4 - Data Importing, waiting on changes

#1959 - Publish new vs. update existing entities

Issue - State: open - Opened by dsenalik about 1 month ago
Labels: Good First Issue, Group 1 - Tripal Content Types | Terms | Fields, Priority - Low

#1958 - Fix the "Remove" button on field widgets

Pull Request - State: closed - Opened by dsenalik about 1 month ago - 1 comment
Labels: Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1957 - Formatters should filter out empty elements

Issue - State: open - Opened by dsenalik about 1 month ago
Labels: Group 1 - Tripal Content Types | Terms | Fields, Priority - Low

#1956 - Empty entity title fields are not getting removed when publishing

Issue - State: closed - Opened by dsenalik about 1 month ago - 1 comment
Labels: Group 1 - Tripal Content Types | Terms | Fields

#1955 - Build tripaldocker on all the versions so extensions can better test.

Pull Request - State: closed - Opened by laceysanderson about 2 months ago
Labels: Tripal 4, Group 0 - General Maintenance, Easy PR Review 😀

#1954 - Fix failing tests in the version grid 🙈

Pull Request - State: closed - Opened by laceysanderson about 2 months ago
Labels: URGENT!, Tripal 4, Group 9 - Automated Testing

#1953 - Support Drupal 11.0

Pull Request - State: open - Opened by dsenalik about 2 months ago - 2 comments
Labels: Group 0 - General Maintenance

#1952 - fix publish to store placeholders of proper type

Pull Request - State: closed - Opened by dsenalik about 2 months ago - 12 comments
Labels: Group 1 - Tripal Content Types | Terms | Fields

#1951 - Improve Tripaldocker: support VSCode devcontainers + single dockerfile with args approach

Pull Request - State: closed - Opened by laceysanderson about 2 months ago - 11 comments
Labels: Group 8 - Other Integrations

#1950 - Improve Tripaldocker: support VSCode devcontainers + explore single dockerfile with args approach

Issue - State: closed - Opened by laceysanderson about 2 months ago
Labels: Group 8 - Other Integrations

#1949 - don't add to render array if no value

Pull Request - State: closed - Opened by dsenalik about 2 months ago - 3 comments
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1948 - Publish bug - nulls in drupal field tables

Issue - State: closed - Opened by dsenalik about 2 months ago - 6 comments
Labels: bug - potential, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1947 - Add a "general" test chado schema for tests that don't need all of chado

Issue - State: open - Opened by dsenalik about 2 months ago
Labels: Tripal 4, Group 9 - Automated Testing, Group 10 - Performance

#1946 - regex fix for issue #1945

Pull Request - State: closed - Opened by dsenalik about 2 months ago
Labels: Tripal 4, Group 9 - Automated Testing, Easy PR Review 😀

#1945 - branch regex can't handle group 10

Issue - State: closed - Opened by dsenalik about 2 months ago
Labels: Tripal 4, Group 9 - Automated Testing

#1944 - GFF3 importer now uses buddies

Pull Request - State: closed - Opened by dsenalik about 2 months ago
Labels: Group 4 - Data Importing, Group 10 - Performance

#1943 - Make sure the contact widget/formatter know they are compatible with both fields

Pull Request - State: closed - Opened by laceysanderson 2 months ago - 1 comment
Labels: Group 1 - Tripal Content Types | Terms | Fields

#1942 - ChadoAdditionalTypeTypeDefault can be manually added

Pull Request - State: closed - Opened by dsenalik 2 months ago
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1941 - Can't add "Chado Type Reference" field

Issue - State: closed - Opened by dsenalik 2 months ago - 2 comments
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1940 - Set default terms for field properties when chado mapping is missing.

Pull Request - State: closed - Opened by laceysanderson 2 months ago - 1 comment
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields

#1939 - Many field properties do not have defaults set for when chado mapping is not present.

Issue - State: closed - Opened by laceysanderson 2 months ago
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields

#1938 - Chado property buddy

Pull Request - State: closed - Opened by dsenalik 2 months ago - 1 comment
Labels: Group 2 - Data Storage | Tripal DBX | Chado

#1937 - Support Chado Flyway Migrations

Pull Request - State: open - Opened by laceysanderson 2 months ago
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1936 - Field Settings form is not aware of updates to the schema

Issue - State: open - Opened by laceysanderson 2 months ago
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1935 - Chado Buddy for Properties

Issue - State: closed - Opened by dsenalik 2 months ago
Labels: Group 2 - Data Storage | Tripal DBX | Chado, Group 10 - Performance

#1934 - Docker build fails for PHP8.2 docker file - Windows related

Issue - State: closed - Opened by risharde 2 months ago - 6 comments

#1933 - Windows: Docker build reference to tripaldocker/dockerfile-* file does not seem to be a feature

Issue - State: closed - Opened by risharde 2 months ago - 2 comments

#1932 - Enforce that two different fields cannot have the same cv term

Issue - State: closed - Opened by dsenalik 3 months ago
Labels: Group 1 - Tripal Content Types | Terms | Fields

#1931 - Remove double-space collapse for publish

Pull Request - State: closed - Opened by dsenalik 3 months ago - 1 comment
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1930 - Entity title token replacement if >1 space causes publish duplication

Issue - State: closed - Opened by dsenalik 3 months ago
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1929 - Resolve discovered field name length problems

Pull Request - State: closed - Opened by dsenalik 3 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1928 - Check for new fields fails if property name is too long

Issue - State: closed - Opened by dsenalik 3 months ago
Labels: bug - confirmed, PR Submitted, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1927 - Taxonomy loader split

Pull Request - State: open - Opened by dsenalik 3 months ago - 1 comment
Labels: Group 4 - Data Importing

#1926 - Deprecations for tripal_chado.query in branch tv4g2-issue1341-chadoQu…

Pull Request - State: closed - Opened by pdtouch 3 months ago
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1925 - Improve performance of GFF3 importer

Issue - State: closed - Opened by dsenalik 3 months ago - 2 comments
Labels: Group 4 - Data Importing, Group 10 - Performance

#1924 - Publish fails if fields defining content title are duplicated in Chado

Issue - State: open - Opened by dsenalik 3 months ago
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 4 - Data Importing

#1923 - Set default for chado storage selector when there is only one option

Pull Request - State: closed - Opened by dsenalik 3 months ago
Labels: Community - Enhancement, Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado, Easy PR Review 😀

#1922 - Set default for chado storage selector when there is only one option

Issue - State: closed - Opened by dsenalik 3 months ago
Labels: Community - Enhancement, Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1921 - Revert one change from PR #1882

Pull Request - State: closed - Opened by dsenalik 3 months ago - 1 comment
Labels: bug - confirmed, Release Blocker, Tripal 4, waiting on tagged user, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1920 - The "Remove" button on an entity edit does not remove a linked record from Chado

Issue - State: closed - Opened by dsenalik 3 months ago - 3 comments
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1919 - We can no longer edit and add a linked content type 😱

Issue - State: closed - Opened by dsenalik 3 months ago - 1 comment

#1918 - Synonym field was broken on Drupal ≥ 10.2

Pull Request - State: closed - Opened by dsenalik 3 months ago
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1917 - Update TripalJobs to support callables instead of only functions.

Pull Request - State: closed - Opened by laceysanderson 4 months ago - 1 comment
Labels: Tripal 4, Group 3 - Job Management

#1916 - Tripal Jobs should support callables as callbacks.

Issue - State: closed - Opened by laceysanderson 4 months ago
Labels: Tripal 4, Group 3 - Job Management

#1915 - Adding Organism Image Field

Pull Request - State: open - Opened by spficklin 4 months ago - 2 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀, waiting on changes

#1914 - Fix the "Remove" button on edit form on linker fields

Pull Request - State: closed - Opened by dsenalik 4 months ago - 1 comment
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1913 - Analysis field not working

Issue - State: closed - Opened by spficklin 4 months ago - 8 comments
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1912 - ChadoStorage::deleteValues()

Pull Request - State: closed - Opened by spficklin 4 months ago - 2 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1911 - Local Terms need to be updated in many sites

Issue - State: open - Opened by laceysanderson 4 months ago - 2 comments
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1910 - Allow publishing in batches

Issue - State: open - Opened by dsenalik 4 months ago - 2 comments
Labels: Group 1 - Tripal Content Types | Terms | Fields, Group 10 - Performance

#1909 - Fix ogi CV definition

Pull Request - State: closed - Opened by dsenalik 4 months ago
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1908 - Definition for ogi namespace is wrong

Issue - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1907 - Rename duplicated terms in tcontact.obo

Pull Request - State: closed - Opened by dsenalik 4 months ago - 4 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1906 - Duplicate terms in tcontact.obo

Issue - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 3, bug - potential, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1905 - OBO importer - fix unsubstituted message

Pull Request - State: closed - Opened by dsenalik 4 months ago
Labels: bug - confirmed, Tripal 4, Group 4 - Data Importing, Easy PR Review 😀

#1904 - OBO importer variable not substituted in message

Issue - State: closed - Opened by dsenalik 4 months ago - 3 comments
Labels: bug - confirmed, Good First Issue, Tripal 4, Group 4 - Data Importing

#1903 - Tripal 4 yml typos

Pull Request - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1902 - Find a new ontology for stocks

Issue - State: open - Opened by dsenalik 4 months ago - 2 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1901 - remove duplicated yaml

Pull Request - State: closed - Opened by dsenalik 4 months ago
Labels: bug - potential, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1900 - Duplicated definitions in YAML

Issue - State: closed - Opened by dsenalik 4 months ago
Labels: bug - potential, Good First Issue, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1899 - Remove Drupal 10.0 and 10.1

Pull Request - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing

#1898 - Add support for Drupal 11.0

Issue - State: open - Opened by dsenalik 4 months ago - 4 comments
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing

#1897 - Remove Drupal 10.0 and 10.1 from unit tests

Issue - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing

#1896 - add formatting settings to ChadoStringType field

Pull Request - State: closed - Opened by dsenalik 4 months ago - 1 comment
Labels: Tripal 4, Group 7 - Page Display

#1895 - Drush command to update chado instance to match Tripal Term expectations

Pull Request - State: closed - Opened by laceysanderson 4 months ago - 17 comments
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1894 - CV Term vs. its alias

Issue - State: open - Opened by dsenalik 4 months ago - 1 comment
Labels: Good First Issue, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 7 - Page Display

#1893 - Allow the ChadoStringTypeFormatter to format

Issue - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 7 - Page Display

#1892 - Unpublish UI

Pull Request - State: closed - Opened by spficklin 4 months ago - 5 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1891 - HTML formatting in field values

Issue - State: open - Opened by spficklin 4 months ago - 4 comments
Labels: Group 1 - Tripal Content Types | Terms | Fields, Group 4 - Data Importing, Group 6 - Web Services

#1890 - Add Drupal 10.3 to automated testing

Pull Request - State: closed - Opened by dsenalik 4 months ago - 2 comments
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing

#1889 - Fields move record_id_term to parent class

Pull Request - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1888 - Add support for Drupal 10.3

Issue - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing

#1887 - Add missing tripal icon for admin "Manage" toolbar

Pull Request - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 7 - Page Display, Easy PR Review 😀

#1886 - Missing icon on Tripal admin tab

Issue - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 7 - Page Display

#1885 - GFF3 loader add some additional logger messages when creating terms or DBs

Pull Request - State: closed - Opened by dsenalik 4 months ago
Labels: Community - Enhancement, Tripal 4, Group 4 - Data Importing, Easy PR Review 😀

#1884 - Explain long pause in GFF importer

Issue - State: closed - Opened by dsenalik 4 months ago
Labels: Community - Enhancement, Good First Issue, Tripal 4, Group 4 - Data Importing

#1883 - Create Custom Tables with YML Files

Issue - State: open - Opened by spficklin 4 months ago - 1 comment
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1882 - Tv4g1 issue1843 publishing cardinality

Pull Request - State: closed - Opened by spficklin 4 months ago - 11 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

GitHub / tripal/tripal issues and pull requests