tripal/tripal issues and pull requests

#1899 - Remove Drupal 10.0 and 10.1

Pull Request - State: closed - Opened by dsenalik 21 days ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing

#1898 - Add support for Drupal 11.0

Issue - State: open - Opened by dsenalik 22 days ago - 3 comments
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing

#1897 - Remove Drupal 10.0 and 10.1 from unit tests

Issue - State: closed - Opened by dsenalik 22 days ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing

#1896 - add formatting settings to ChadoStringType field

Pull Request - State: closed - Opened by dsenalik 22 days ago - 1 comment
Labels: Tripal 4, Group 7 - Page Display

#1895 - Drush command to update chado instance to match Tripal Term expectations

Pull Request - State: open - Opened by laceysanderson 24 days ago
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1894 - CV Term vs. its alias

Issue - State: open - Opened by dsenalik 24 days ago
Labels: Good First Issue, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 7 - Page Display

#1893 - Allow the ChadoStringTypeFormatter to format

Issue - State: closed - Opened by dsenalik 24 days ago
Labels: Tripal 4, Group 7 - Page Display

#1892 - Unpublish UI

Pull Request - State: open - Opened by spficklin 25 days ago - 2 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1891 - HTML formatting in field values

Issue - State: open - Opened by spficklin 29 days ago - 4 comments
Labels: Group 1 - Tripal Content Types | Terms | Fields, Group 4 - Data Importing, Group 6 - Web Services

#1890 - Add Drupal 10.3 to automated testing

Pull Request - State: closed - Opened by dsenalik 30 days ago - 2 comments
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing

#1889 - Fields move record_id_term to parent class

Pull Request - State: closed - Opened by dsenalik 30 days ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1888 - Add support for Drupal 10.3

Issue - State: closed - Opened by dsenalik 30 days ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 9 - Automated Testing

#1887 - Add missing tripal icon for admin "Manage" toolbar

Pull Request - State: closed - Opened by dsenalik about 1 month ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 7 - Page Display, Easy PR Review 😀

#1886 - Missing icon on Tripal admin tab

Issue - State: closed - Opened by dsenalik about 1 month ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 7 - Page Display

#1885 - GFF3 loader add some additional logger messages when creating terms or DBs

Pull Request - State: closed - Opened by dsenalik about 1 month ago
Labels: Community - Enhancement, Tripal 4, Group 4 - Data Importing, Easy PR Review 😀

#1884 - Explain long pause in GFF importer

Issue - State: closed - Opened by dsenalik about 1 month ago
Labels: Community - Enhancement, Good First Issue, Tripal 4, Group 4 - Data Importing

#1883 - Create Custom Tables with YML Files

Issue - State: open - Opened by spficklin about 1 month ago - 1 comment
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1882 - Tv4g1 issue1843 publishing cardinality

Pull Request - State: open - Opened by spficklin about 1 month ago - 10 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1881 - May 2024 typo corrections

Pull Request - State: closed - Opened by dsenalik about 1 month ago
Labels: Tripal 4, Group 0 - General Maintenance, Easy PR Review 😀

#1880 - Improve Chado Storage error messages

Issue - State: open - Opened by laceysanderson about 1 month ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1879 - Stop hardcoding record_id_term

Issue - State: closed - Opened by dsenalik about 1 month ago
Labels: Good First Issue, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1878 - Render HTML tags in page titles, e.g. organism scientifc name

Pull Request - State: closed - Opened by dsenalik about 2 months ago - 3 comments
Labels: Tripal 4, Group 7 - Page Display

#1877 - 1815 Handle locked (or not locked) materialized views better functionality

Pull Request - State: open - Opened by Ferrisx4 about 2 months ago - 4 comments
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1876 - How are we supporting Chado flyway migrations?

Issue - State: open - Opened by laceysanderson about 2 months ago
Labels: PMC - Discussion, TAC - Discussion, Group 2 - Data Storage | Tripal DBX | Chado, Group 8 - Other Integrations

#1875 - Chado Contact by Role field

Pull Request - State: closed - Opened by laceysanderson about 2 months ago - 13 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1874 - Fix sequence coordinates widget when creating new feature

Pull Request - State: closed - Opened by dsenalik about 2 months ago - 1 comment
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1873 - WSOD creating a gene

Issue - State: closed - Opened by dsenalik about 2 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1872 - Support HTML tags in content titles

Issue - State: closed - Opened by dsenalik about 2 months ago
Labels: Tripal 4, Group 7 - Page Display

#1871 - URL and name field filters default to plain text

Pull Request - State: closed - Opened by dsenalik 2 months ago - 4 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1870 - Chado Bulk Loader bug when reordering (Tripal 3)

Issue - State: open - Opened by dsenalik 2 months ago
Labels: bug - confirmed, Tripal 3, Group 4 - Data Importing

#1869 - Checking for new fields

Pull Request - State: closed - Opened by spficklin 2 months ago - 5 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1868 - Fields Code cleanup : Tv4g0 issue1866 code cleanup and tv4g10-issue1699-remove-unneeded-use-statements

Pull Request - State: closed - Opened by pdtouch 2 months ago
Labels: Tripal 4, Group 0 - General Maintenance, Group 10 - Performance

#1867 - Publish is not publishing more than one linking record

Pull Request - State: closed - Opened by laceysanderson 2 months ago - 2 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1866 - Code Cleanup

Issue - State: closed - Opened by dsenalik 2 months ago - 1 comment
Labels: Tripal 4, Group 0 - General Maintenance

#1865 - Implement the fallback entity lookup

Pull Request - State: closed - Opened by dsenalik 2 months ago - 6 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1864 - URI fields should be plain text

Issue - State: closed - Opened by dsenalik 2 months ago - 1 comment
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1863 - Expand Tripal Layout to support form display as well

Issue - State: open - Opened by laceysanderson 2 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 7 - Page Display

#1862 - Enable Wysiwyg toolbar for Tripal/Chado Text fields

Pull Request - State: closed - Opened by laceysanderson 2 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1861 - Fix the sequence coordinates field

Pull Request - State: closed - Opened by dsenalik 2 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1860 - Fix dbxref field, observed after GFF3 importer

Pull Request - State: closed - Opened by dsenalik 2 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1859 - Fix the sequence coordinates field

Issue - State: closed - Opened by dsenalik 2 months ago
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1858 - Improving tripal docker performance

Pull Request - State: open - Opened by laceysanderson 2 months ago
Labels: Tripal 4, Group 10 - Performance

#1857 - TripalDocker: First page load is VERY SLOW

Issue - State: open - Opened by laceysanderson 2 months ago
Labels: Tripal 4, Group 8 - Other Integrations, Group 10 - Performance

#1856 - Ensure field labels and descriptions are translatable text

Issue - State: open - Opened by laceysanderson 2 months ago - 2 comments
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields

#1855 - Fixes validation missing values bug

Pull Request - State: closed - Opened by dsenalik 3 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1854 - Fix bug in publish showing up in testing environment

Pull Request - State: closed - Opened by dsenalik 3 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1853 - Publish fails for automated tests, puts fields in wrong schema

Issue - State: closed - Opened by dsenalik 3 months ago
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1852 - Chado Fields using the textarea do not support Wysiwyg / Editor toolbar

Issue - State: closed - Opened by laceysanderson 3 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1851 - New Widgets for Property Fields

Pull Request - State: closed - Opened by laceysanderson 3 months ago - 4 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1850 - Fallback entity lookup

Issue - State: closed - Opened by dsenalik 3 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1849 - Update chado prepare sql for automated tests

Pull Request - State: closed - Opened by dsenalik 3 months ago
Labels: bug - confirmed, Tripal 4, Group 9 - Automated Testing

#1848 - Testing is currently failing

Issue - State: closed - Opened by dsenalik 3 months ago - 1 comment
Labels: bug - confirmed, Tripal 4, Group 9 - Automated Testing

#1847 - Tv4g2 issue1779 no default custom tables

Pull Request - State: closed - Opened by Ferrisx4 3 months ago
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1846 - Catch adding Chado field to non-Chado content type

Pull Request - State: closed - Opened by dsenalik 3 months ago - 2 comments
Labels: bug - confirmed, Group 1 - Tripal Content Types | Terms | Fields, Easy PR Review 😀

#1845 - Attribution fields on project/analysis-based content types

Issue - State: open - Opened by laceysanderson 3 months ago - 1 comment
Labels: Tripal 4, PMC - Discussion, Group 1 - Tripal Content Types | Terms | Fields

#1844 - Implements the ChadoBuddy framework + Cvterm/Dbxref buddies

Pull Request - State: open - Opened by laceysanderson 3 months ago
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1843 - Publish is not publishing more than one item when cardinality is unlimited

Issue - State: open - Opened by dsenalik 3 months ago - 1 comment
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1842 - Automated Field Testing: focused on the field creation forms in Drupal 10.2+

Pull Request - State: open - Opened by laceysanderson 3 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 9 - Automated Testing

#1841 - Fix data leak between publish calls

Pull Request - State: closed - Opened by laceysanderson 3 months ago - 4 comments
Labels: bug - confirmed, Tripal 4, Follow-up Needed, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1840 - Modified composer.json php version to 8.1

Pull Request - State: closed - Opened by pdtouch 3 months ago - 1 comment

#1839 - Move helper functions out of Functional base and into Test Trait

Pull Request - State: closed - Opened by laceysanderson 3 months ago - 2 comments
Labels: Tripal 4, Group 9 - Automated Testing, Easy PR Review 😀

#1838 - Methods for creating content types + fields should be in a TestTrait

Issue - State: closed - Opened by laceysanderson 3 months ago
Labels: Tripal 4, Group 9 - Automated Testing

#1837 - Chado fields cannot be added to content types

Issue - State: closed - Opened by mdondrup 3 months ago - 1 comment
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1836 - Sequence Field infers sequence based on location

Issue - State: open - Opened by laceysanderson 3 months ago - 1 comment
Labels: Community - Please Contribute, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1835 - GFF importer, fix loading gene sequence from FASTA section

Pull Request - State: closed - Opened by dsenalik 3 months ago - 1 comment
Labels: bug - confirmed, Tripal 4, Group 4 - Data Importing

#1834 - Add IPv6 loopback to support docker v26

Pull Request - State: closed - Opened by dsenalik 3 months ago - 1 comment
Labels: Tripal 4, Group 0 - General Maintenance

#1833 - Publications Importer V4

Pull Request - State: closed - Opened by risharde 3 months ago - 1 comment
Labels: Tripal 4, Group 4 - Data Importing

#1832 - no pg_hba.conf entry for host "::1"

Issue - State: closed - Opened by dsenalik 3 months ago - 4 comments
Labels: Tripal 3, Tripal 4, bug - external, Group 0 - General Maintenance

#1831 - Error with Chado module installation

Issue - State: closed - Opened by smriti-135 3 months ago - 2 comments
Labels: Community - Discussion, Tripal 4

#1830 - Fix automated testing on 4.x

Pull Request - State: closed - Opened by laceysanderson 3 months ago - 1 comment
Labels: Tripal 4, Group 9 - Automated Testing

#1829 - Automated Testing failing on 4.x due to dockerfile change name

Issue - State: closed - Opened by laceysanderson 3 months ago
Labels: bug - confirmed, Tripal 4, bug - external

#1828 - How to search for Tripal Content?

Issue - State: open - Opened by mdondrup 3 months ago - 3 comments
Labels: Community - Question, Tripal 4, Group 5 - Search | ElasticSearch | Views

#1827 - Remove uniqueness constraint on Analysis Program+version?

Issue - State: closed - Opened by mdondrup 3 months ago - 5 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1826 - Analysis validation (maybe others) don't show the offending values

Issue - State: closed - Opened by dsenalik 3 months ago - 1 comment
Labels: bug - confirmed, PR Submitted, Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1825 - Tripal Extensions Access Denied

Issue - State: open - Opened by mdondrup 3 months ago - 3 comments
Labels: Tripal 4, bug - external, Group 0 - General Maintenance

#1824 - Publish doesn't get dbxref quite right

Issue - State: closed - Opened by dsenalik 3 months ago - 1 comment
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1823 - Gene imported with GFF importer have no sequence

Issue - State: open - Opened by mdondrup 4 months ago - 21 comments
Labels: bug - potential, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 4 - Data Importing

#1822 - Automated Testing for fields

Issue - State: open - Opened by laceysanderson 4 months ago - 1 comment
Labels: Group 1 - Tripal Content Types | Terms | Fields, Group 9 - Automated Testing

#1821 - Postgresql version settable for building a docker

Pull Request - State: closed - Opened by dsenalik 4 months ago - 7 comments
Labels: Tripal 4, Group 0 - General Maintenance

#1820 - Postgres version in the docker files is hardcoded, make it settable

Issue - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 0 - General Maintenance

#1819 - Add missing terms for some chado columns, defining when necessary

Pull Request - State: closed - Opened by dsenalik 4 months ago - 2 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1818 - Provide a way to set the base table for a newly defined content type

Issue - State: closed - Opened by dsenalik 4 months ago - 1 comment
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1817 - A few fields have errors when added to a newly defined content type

Issue - State: open - Opened by dsenalik 4 months ago
Labels: bug - confirmed, Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1816 - Missing CV Terms

Issue - State: closed - Opened by dsenalik 4 months ago - 2 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 2 - Data Storage | Tripal DBX | Chado

#1815 - Locked Mview handling

Issue - State: open - Opened by Ferrisx4 4 months ago - 7 comments
Labels: Tripal 4, Group 2 - Data Storage | Tripal DBX | Chado

#1814 - Ensure that Tripal Layout is installed in our dockers

Pull Request - State: closed - Opened by laceysanderson 4 months ago - 2 comments
Labels: Tripal 4, Group 0 - General Maintenance

#1813 - Update remaining t4d8 references

Pull Request - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 0 - General Maintenance, Easy PR Review 😀

#1812 - Field group should be included in the Tripal Docker

Issue - State: closed - Opened by laceysanderson 4 months ago
Labels: Tripal 4, Group 0 - General Maintenance

#1811 - There are still a few t4d8 references left

Issue - State: closed - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 0 - General Maintenance

#1810 - Gene entity Display : Issue with Tripal Layout

Issue - State: open - Opened by SalihaZ 4 months ago - 34 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields, Group 7 - Page Display

#1809 - The predefined null contact gets published

Issue - State: open - Opened by dsenalik 4 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1808 - Tripal (not chado) fields cannot be added through GUI

Issue - State: closed - Opened by dsenalik 4 months ago - 1 comment
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1807 - Adding generic Tripal properties to a content type gives WSOD and error.

Issue - State: open - Opened by spficklin 4 months ago
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1806 - Publication Importer - V3

Pull Request - State: closed - Opened by risharde 4 months ago - 5 comments
Labels: Tripal 4, Group 4 - Data Importing

#1805 - New base table third party setting + Drupal 10.2 fixes

Pull Request - State: closed - Opened by dsenalik 4 months ago - 21 comments
Labels: Tripal 4, Group 1 - Tripal Content Types | Terms | Fields

#1804 - PHPUnit testing error on Drupal 10.2 - not sure if it's an incompatibility, bug or something else

Issue - State: closed - Opened by risharde 4 months ago - 13 comments
Labels: Tripal 4, Group 9 - Automated Testing

#1803 - Twig\Error\LoaderError: Template "@organisms/list/list.twig" is not defined

Issue - State: open - Opened by LinsenHou 4 months ago - 8 comments
Labels: Community - Question, Tripal 4

#1802 - Update older tests to use ChadoTestTrait instead of a hardcoded `testchado` schema

Pull Request - State: closed - Opened by laceysanderson 4 months ago - 2 comments
Labels: Tripal 4, Group 9 - Automated Testing

#1801 - Tripal Layout naming change to human readable format in Admin -> Extensions

Pull Request - State: closed - Opened by risharde 4 months ago
Labels: Tripal 4, Group 9 - Automated Testing, Easy PR Review 😀

#1800 - Tripal Layout uses machine name as the module title in Admin -> Extensions

Issue - State: closed - Opened by risharde 4 months ago - 2 comments

GitHub / tripal/tripal issues and pull requests