tripal/t4d8 issues and pull requests

#334 - Move workflows

Issue - State: open - Opened by laceysanderson about 2 years ago

#333 - added sequence field

Pull Request - State: closed - Opened by srobb1 about 2 years ago - 2 comments

#332 - Update README.md

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 1 comment

#331 - Update README.md

Pull Request - State: closed - Opened by laceysanderson about 2 years ago

#329 - Update latest tag to use the new github action.

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 1 comment

#328 - Docker latest tag is not being updated

Issue - State: closed - Opened by laceysanderson about 2 years ago

#326 - Chado Prepare errors out when reinstalling chado instance

Issue - State: closed - Opened by risharde about 2 years ago - 2 comments

#325 - Fix issue #324 by removing old drush depenendancy.

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 1 comment

#324 - Tripaldocker cannot resolve dependencies

Issue - State: closed - Opened by laceysanderson about 2 years ago

#323 - Terms for Field Properties.

Pull Request - State: closed - Opened by spficklin about 2 years ago - 2 comments

#322 - Properties need terms

Issue - State: closed - Opened by spficklin about 2 years ago
Labels: Group 1 - Entities|Bundles|Fields

#321 - Field Actions Redesign

Pull Request - State: closed - Opened by spficklin about 2 years ago - 10 comments

#320 - Remove auto-creation of Chado in Tests

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 3 comments

#319 - Docker Build: Do not run composer as superuser error

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 1 comment

#318 - Docker Build: Do not run composer as superuser error

Pull Request - State: closed - Opened by laceysanderson about 2 years ago

#317 - Tripal content types: full support for TripalTerms

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 5 comments

#314 - Remove auto-creation of Chado in Tests

Issue - State: closed - Opened by laceysanderson about 2 years ago
Labels: PR Submitted, Group 9 - Documentation, Group 0 - General Maitenance, Required for Alpha1

#313 - BUG Fix #312: pass schema name instead of connection object.

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 2 comments

#312 - LogicException when tests fail

Issue - State: closed - Opened by laceysanderson about 2 years ago - 1 comment
Labels: Bug, Group 2 - Chado/Storage

#311 - Type Field Bug: Genome Assembly

Issue - State: closed - Opened by laceysanderson about 2 years ago - 4 comments
Labels: Bug, Group 1 - Entities|Bundles|Fields, PR Submitted, Required for Alpha1

#310 - Updates to actions for fields

Issue - State: closed - Opened by spficklin about 2 years ago - 1 comment
Labels: Group 1 - Entities|Bundles|Fields, PR Submitted, Required for Alpha1

#309 - Added automated testing to show the query builder is working.

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 1 comment

#308 - Moving Tripal 4 back into tripal/tripal repo

Issue - State: open - Opened by laceysanderson about 2 years ago - 2 comments
Labels: Required for Alpha1

#307 - Fix link to Drupal 10 tests.

Pull Request - State: closed - Opened by laceysanderson about 2 years ago

#306 - Fixes the Readme grid

Pull Request - State: closed - Opened by laceysanderson about 2 years ago

#304 - Update sequence values for each table in chado prepare fixture file

Pull Request - State: closed - Opened by risharde about 2 years ago - 2 comments
Labels: Group 2 - Chado/Storage

#303 - Type Field

Pull Request - State: closed - Opened by spficklin about 2 years ago - 2 comments
Labels: Group 1 - Entities|Bundles|Fields, Group 2 - Chado/Storage

#302 - Fix for ChadoConnection::findVersion()

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 3 comments
Labels: Bug, Group 2 - Chado/Storage

#301 - Invalid or unsupported Chado schema version '1.3x'.

Issue - State: closed - Opened by spficklin about 2 years ago - 1 comment
Labels: Bug

#300 - compiling pepare changes

Pull Request - State: closed - Opened by laceysanderson about 2 years ago

#298 - Type_ID fields

Issue - State: closed - Opened by spficklin about 2 years ago
Labels: Group 1 - Entities|Bundles|Fields, PR Submitted, Required for Alpha1

#297 - Ensure Chado Prepare works in automated testing

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 3 comments

#296 - "Check for new fields" on "Manage Fields" pages causes a WSOD

Issue - State: closed - Opened by laceysanderson about 2 years ago - 1 comment
Labels: Bug, Group 1 - Entities|Bundles|Fields, Required for Alpha1

#294 - Tripal DBX, Drupal Query Builder + guessing default database

Issue - State: closed - Opened by laceysanderson about 2 years ago - 2 comments

#293 - Bringing both prepare testing branches together

Pull Request - State: closed - Opened by laceysanderson about 2 years ago - 1 comment

#292 - Add Data Sequence Field

Issue - State: closed - Opened by 4ctrl-alt-del about 2 years ago
Labels: Group 1 - Entities|Bundles|Fields

#291 - Chado prepare step needs automated testing

Issue - State: closed - Opened by laceysanderson about 2 years ago - 4 comments
Labels: Group 1 - Entities|Bundles|Fields, Group 2 - Chado/Storage

#290 - Test Tripal DBX Table Prefixing + Add support for Inheritance

Pull Request - State: closed - Opened by laceysanderson over 2 years ago - 1 comment
Labels: Group 2 - Chado/Storage

#289 - Removed Documentation

Pull Request - State: closed - Opened by spficklin over 2 years ago - 2 comments
Labels: Group 9 - Documentation

#288 - FASTA Importer

Pull Request - State: closed - Opened by risharde over 2 years ago - 2 comments
Labels: Group 4 - Data Importing

#287 - Update workflow compatibility and release timeline

Pull Request - State: closed - Opened by laceysanderson over 2 years ago - 1 comment
Labels: Group 9 - Documentation

#285 - Vocabularies did not appear in the Tripal tool bar after I finished install Tripal in Drupal guided by Docs

Issue - State: closed - Opened by Xueliang24 over 2 years ago - 8 comments

#283 - Tv4g0 issue269 permissions

Pull Request - State: closed - Opened by laceysanderson over 2 years ago - 1 comment

#280 - Too many workflows for Github Actions

Pull Request - State: closed - Opened by laceysanderson over 2 years ago - 1 comment

#279 - Github Actions spawns too many workflows during development

Pull Request - State: closed - Opened by laceysanderson over 2 years ago - 1 comment

#278 - Github Actions spawns too many workflows during development

Issue - State: closed - Opened by laceysanderson over 2 years ago

#275 - GFF3 Importer

Pull Request - State: closed - Opened by risharde over 2 years ago - 3 comments

#274 - Chado Properties Field

Pull Request - State: closed - Opened by spficklin over 2 years ago - 18 comments
Labels: Group 1 - Entities|Bundles|Fields, Group 2 - Chado/Storage

#273 - Docker build fails

Pull Request - State: closed - Opened by laceysanderson over 2 years ago - 1 comment

#272 - Docker Build fails

Issue - State: closed - Opened by laceysanderson over 2 years ago

#271 - Tv4g1 129 tripal fields complex

Pull Request - State: closed - Opened by spficklin over 2 years ago - 7 comments

#265 - Upgrade the Chado Property field

Issue - State: closed - Opened by laceysanderson over 2 years ago
Labels: Group 1 - Entities|Bundles|Fields, PR Submitted, Required for Alpha1

#261 - Automatic Creation of Single Valued, String Chado Fields

Pull Request - State: closed - Opened by spficklin over 2 years ago - 8 comments
Labels: Group 1 - Entities|Bundles|Fields, Group 2 - Chado/Storage, Group 7 - Display

#259 - Upgrade the Organism Field

Issue - State: closed - Opened by laceysanderson over 2 years ago - 1 comment
Labels: Group 1 - Entities|Bundles|Fields

#258 - Automated creation of Tripal Fields for Chado

Issue - State: closed - Opened by laceysanderson over 2 years ago - 2 comments
Labels: Group 1 - Entities|Bundles|Fields

#256 - Chado Prepare: Entity Type Creation -ensure terms attached fully

Issue - State: closed - Opened by laceysanderson over 2 years ago - 2 comments
Labels: Group 1 - Entities|Bundles|Fields, PR Submitted, Required for Alpha1

#253 - TripalJobs Manager

Issue - State: closed - Opened by spficklin over 2 years ago - 1 comment
Labels: Group 3 - Job Management

#244 - Content Types Creation With Terms

Pull Request - State: closed - Opened by spficklin over 2 years ago - 8 comments
Labels: Group 1 - Entities|Bundles|Fields, Group 4 - Data Importing

#242 - Remove $chado member variable from the ChadoIdSpace

Issue - State: closed - Opened by spficklin over 2 years ago - 3 comments
Labels: Group 2 - Chado/Storage

#231 - GFF3Importer

Issue - State: closed - Opened by spficklin over 2 years ago - 2 comments
Labels: Group 4 - Data Importing

#226 - Custom Tables are not multi-chado aware

Issue - State: closed - Opened by spficklin over 2 years ago - 2 comments
Labels: Group 2 - Chado/Storage

#225 - Chado API functions need a ChadoConnection argument

Issue - State: closed - Opened by spficklin over 2 years ago - 1 comment
Labels: Group 2 - Chado/Storage

#218 - Table prefixes applied twice on Updates

Issue - State: closed - Opened by spficklin over 2 years ago - 2 comments
Labels: Bug, Group 2 - Chado/Storage

#217 - Table prefixes in the TripalDBXConnection (Formerly BioDB).

Issue - State: closed - Opened by spficklin over 2 years ago - 6 comments
Labels: Group 2 - Chado/Storage, PR Submitted

#215 - Uninstalling tripal_chado removes custom table information from public.tripal_custom_tables, correct?

Issue - State: closed - Opened by risharde over 2 years ago - 1 comment

#212 - Chado Prepare

Issue - State: closed - Opened by spficklin over 2 years ago - 3 comments
Labels: Group 1 - Entities|Bundles|Fields, Group 2 - Chado/Storage, Group 4 - Data Importing

#209 - Chado custom table functionality

Pull Request - State: closed - Opened by risharde over 2 years ago - 8 comments

#204 - Importer - 5 - tripal importer make preparer compatible

Pull Request - State: closed - Opened by risharde almost 3 years ago - 8 comments

#203 - Importer - 4 - tripal importer chado custom tables (D9 compatible)

Pull Request - State: closed - Opened by risharde almost 3 years ago - 3 comments

#197 - Move in-progress docs + expand

Issue - State: closed - Opened by laceysanderson almost 3 years ago
Labels: Group 9 - Documentation

#196 - Upgrading Importer use of old Chado Prepare to the new Task system

Issue - State: closed - Opened by risharde almost 3 years ago - 6 comments
Labels: Group 4 - Data Importing

#190 - Merge tripal_biodb module into tripal module

Issue - State: closed - Opened by laceysanderson almost 3 years ago - 3 comments
Labels: Group 2 - Chado/Storage

#170 - Multiple chado instances and ChadoConnection behavior

Issue - State: closed - Opened by guignonv about 3 years ago - 1 comment
Labels: Group 2 - Chado/Storage, Group 9 - Documentation

#134 - Tripal BioDB Integration

Issue - State: closed - Opened by laceysanderson over 3 years ago - 15 comments
Labels: Group 2 - Chado/Storage

#125 - Automatic machine name in TripalEntityType::create

Issue - State: closed - Opened by laceysanderson over 3 years ago
Labels: Group 1 - Entities|Bundles|Fields

#124 - Improve Hands-on Cvterm docs

Issue - State: closed - Opened by laceysanderson over 3 years ago - 2 comments
Labels: Group 2 - Chado/Storage, Group 9 - Documentation

#123 - Chado setup prepare

Pull Request - State: closed - Opened by laceysanderson over 3 years ago - 3 comments

#122 - Group 2: Tripal Chado MISCELLANEOUS API functions

Issue - State: closed - Opened by laceysanderson over 3 years ago
Labels: Group 2 - Chado/Storage

#113 - Postgresql out of memory error when dropping chado database

Issue - State: closed - Opened by risharde over 3 years ago - 1 comment
Labels: Group 9 - Documentation

#109 - We need a working OBO importer for Tripal 4

Issue - State: closed - Opened by risharde almost 4 years ago - 1 comment
Labels: Group 4 - Data Importing

#103 - Have TripalDocker automatically build images and push to docker hub/github

Issue - State: closed - Opened by laceysanderson about 4 years ago - 1 comment

#102 - Tv4 docker with 9.0.x and 9.1.x + Fix deprecation notices

Pull Request - State: closed - Opened by laceysanderson about 4 years ago

#101 - Review/Edit of Developer Documentation

Pull Request - State: closed - Opened by 4ctrl-alt-del about 4 years ago

#100 - Deprecation Notices for Drupal 9.1.x

Issue - State: closed - Opened by laceysanderson about 4 years ago - 6 comments

#99 - Places icon to Tripal toolbar tray items

Pull Request - State: closed - Opened by reynoldtan about 4 years ago

#98 - Added a single unit test to work on performance optimization of chado_insert_cvterm function + optimization tweak which brings execution down from 5.9ms to 5.3ms

Pull Request - State: closed - Opened by risharde about 4 years ago - 3 comments

GitHub / tripal/t4d8 issues and pull requests