Ecosyste.ms: Issues

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GitHub / traja-team/traja issues and pull requests

#103 - import error of is_datetime_or_timedelta from pandas

Issue - State: open - Opened by miaowangcissy 7 months ago - 2 comments

#102 - Bump Numpy version and fix complex type

Pull Request - State: closed - Opened by WolfByttner 10 months ago - 1 comment

#101 - Fix histogram rotation to keep y as first dimension

Pull Request - State: closed - Opened by justinshenk over 2 years ago - 2 comments

#100 - plot_grid is rotating the grid

Issue - State: closed - Opened by OmegAshEnr01n over 2 years ago - 1 comment

#99 - Support maDLC data

Issue - State: closed - Opened by Paddy159 over 2 years ago - 1 comment

#98 - Bump numpy from 1.18.5 to 1.22.0 in /requirements

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#97 - Bump numpy from 1.18.5 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#96 - Cannot import model LSTM

Issue - State: closed - Opened by alisonsin over 3 years ago - 3 comments

#95 - Warning about FixedFormatter / FixedLocator

Issue - State: open - Opened by rodrigo-j-goncalves over 3 years ago

#94 - Draft: Update pituitary gland ODE with better simulator, ODE class and dataframe

Pull Request - State: open - Opened by WolfByttner over 3 years ago - 4 comments

#93 - Fix typo

Pull Request - State: closed - Opened by jootten over 3 years ago - 2 comments

#92 - Minor additions

Pull Request - State: closed - Opened by jootten over 3 years ago

#91 - Review update

Pull Request - State: closed - Opened by justinshenk over 3 years ago - 1 comment

#90 - Fix subpackages

Pull Request - State: closed - Opened by justinshenk over 3 years ago - 1 comment

#89 - Resample time not working

Issue - State: closed - Opened by a-paxton over 3 years ago - 1 comment

#88 - Periodogram not working

Issue - State: closed - Opened by a-paxton over 3 years ago - 1 comment

#87 - Autocorrelation plotting not working

Issue - State: closed - Opened by a-paxton over 3 years ago - 1 comment

#86 - Add methods

Pull Request - State: closed - Opened by justinshenk over 3 years ago - 1 comment

#85 - num_future not used

Issue - State: open - Opened by justinshenk over 3 years ago

#84 - reset_state is unused

Issue - State: open - Opened by justinshenk over 3 years ago

#83 - JOSS Review - Example in latest docs (Predicting Trajectories)

Issue - State: closed - Opened by AbigailMcGovern over 3 years ago - 1 comment

#82 - attention layer on top of LSTMs

Issue - State: open - Opened by Saran-nns almost 4 years ago
Labels: enhancement, help wanted

#81 - Reduce functional test execution time

Issue - State: open - Opened by justinshenk almost 4 years ago
Labels: enhancement

#80 - Test fails on Python 3.8 on CI

Issue - State: open - Opened by justinshenk almost 4 years ago
Labels: bug

#79 - Stock price forecasting demo

Issue - State: open - Opened by justinshenk almost 4 years ago - 6 comments
Labels: enhancement, good first issue

#78 - Added functionality to create a convex hull for any trajectory, as an…

Pull Request - State: closed - Opened by aleczoeller almost 4 years ago - 2 comments

#77 - JOSS Paper Submission revision

Issue - State: closed - Opened by justinshenk almost 4 years ago

#76 - Remove unused HybridTrainer args from docstring

Issue - State: open - Opened by justinshenk almost 4 years ago
Labels: invalid

#75 - Add Pituitary gland example function

Pull Request - State: closed - Opened by WolfByttner almost 4 years ago - 2 comments

#74 - Add delay coordinate embeddings

Issue - State: open - Opened by WolfByttner almost 4 years ago - 1 comment

#73 - Add initial contributing guide

Pull Request - State: closed - Opened by WolfByttner almost 4 years ago - 1 comment

#72 - added validation and testing during training

Pull Request - State: closed - Opened by MaddyThakker almost 4 years ago - 4 comments

#71 - Linter

Pull Request - State: closed - Opened by Saran-nns about 4 years ago - 2 comments

#70 - test vaegan

Issue - State: open - Opened by Saran-nns about 4 years ago

#69 - Build is failing

Issue - State: closed - Opened by justinshenk about 4 years ago

#68 - Linting

Issue - State: open - Opened by Saran-nns about 4 years ago - 1 comment

#67 - Implement regression parameter 'guess' visualisations

Issue - State: open - Opened by WolfByttner about 4 years ago

#66 - fixing accuracy > 1 error

Pull Request - State: closed - Opened by MaddyThakker about 4 years ago - 3 comments

#65 - Unused variable

Issue - State: open - Opened by justinshenk about 4 years ago - 1 comment
Labels: invalid

#64 - Plotly imported but not used

Issue - State: closed - Opened by justinshenk about 4 years ago - 4 comments
Labels: question

#63 - Fix geolife remove to utm

Pull Request - State: closed - Opened by justinshenk about 4 years ago

#62 - Remove to_utm, fix geolife import and add pedestrian datasets

Pull Request - State: closed - Opened by justinshenk about 4 years ago

#61 - Fix color_dark plotting

Pull Request - State: closed - Opened by justinshenk about 4 years ago

#60 - Fix color_dark plotting

Pull Request - State: closed - Opened by justinshenk about 4 years ago

#59 - Empty manifold module

Issue - State: open - Opened by justinshenk about 4 years ago - 3 comments
Labels: help wanted

#58 - Compute PCA on latent space

Issue - State: open - Opened by WolfByttner about 4 years ago

#57 - test_ae_classification_network_converges gives accuracy > 1

Issue - State: closed - Opened by MaddyThakker about 4 years ago - 2 comments

#56 - Classification

Pull Request - State: closed - Opened by WolfByttner about 4 years ago - 3 comments

#55 - Fix time plotting

Pull Request - State: closed - Opened by justinshenk about 4 years ago

#54 - Add calc_laterality and fix plotting error

Pull Request - State: closed - Opened by justinshenk about 4 years ago - 2 comments

#52 - Fortasyn mice - predict how long ago they suffered a stroke

Issue - State: open - Opened by WolfByttner about 4 years ago - 1 comment

#51 - Classification

Pull Request - State: closed - Opened by WolfByttner about 4 years ago - 1 comment

#50 - Classify Fortasyn mice - stroke or not

Issue - State: closed - Opened by WolfByttner about 4 years ago - 1 comment

#49 - Shorten calculate_ method name to calc_ for consistency

Pull Request - State: closed - Opened by justinshenk about 4 years ago

#48 - Update vaegan.py

Pull Request - State: open - Opened by Saran-nns about 4 years ago - 15 comments

#47 - Add latent space visualisers

Issue - State: open - Opened by WolfByttner about 4 years ago - 3 comments

#46 - Add classification functionality

Issue - State: open - Opened by WolfByttner about 4 years ago

#45 - Added Elk example

Pull Request - State: closed - Opened by MaddyThakker about 4 years ago

#44 - Added Elk example

Pull Request - State: closed - Opened by MaddyThakker about 4 years ago

#43 - Add example dataset(s) with parameters

Issue - State: open - Opened by WolfByttner about 4 years ago

#42 - Add example dataset(s) with classes

Issue - State: open - Opened by WolfByttner about 4 years ago

#40 - Create WeightedRandomSamplers unit tests in test_dataset.py

Issue - State: closed - Opened by WolfByttner about 4 years ago - 1 comment

#39 - Datagenerator

Pull Request - State: closed - Opened by WolfByttner about 4 years ago - 7 comments

#38 - trainer.fit error

Issue - State: closed - Opened by MaddyThakker about 4 years ago - 2 comments

#37 - Fixed import

Pull Request - State: closed - Opened by MaddyThakker about 4 years ago

#36 - Docs.rinterface

Pull Request - State: closed - Opened by WolfByttner about 4 years ago

#35 - Remove rpy2, fix actogram plotting and test

Pull Request - State: closed - Opened by justinshenk about 4 years ago

#34 - Vae.docs

Pull Request - State: closed - Opened by WolfByttner about 4 years ago

#33 - Vae.rebase

Pull Request - State: closed - Opened by WolfByttner about 4 years ago

#32 - reduce user defined args at Trainers

Issue - State: closed - Opened by Saran-nns about 4 years ago - 2 comments

#31 - Building docs with sphinx

Issue - State: closed - Opened by justinshenk about 4 years ago

#30 - User defined(external)/Custom model support

Issue - State: closed - Opened by Saran-nns about 4 years ago - 3 comments

#29 - pytorch-lightning like trainers

Issue - State: closed - Opened by Saran-nns about 4 years ago - 2 comments

#28 - Trajectory Datasets

Issue - State: open - Opened by justinshenk about 4 years ago - 6 comments

#27 - Implement / test ODE Network

Issue - State: open - Opened by justinshenk about 4 years ago

#26 - Forecasting using LSTM, hybrid models (AE, VAE) with and without classifier networks

Pull Request - State: closed - Opened by Saran-nns about 4 years ago - 1 comment

#25 - check ae, vae todo vaegan,irl,lstm

Pull Request - State: closed - Opened by WolfByttner about 4 years ago - 2 comments

#24 - Remove user defined warmup steps in the model definitions and use warmup steps feature in optimizer instead

Issue - State: open - Opened by Saran-nns over 4 years ago - 2 comments
Labels: enhancement

#23 - LSTM data loaders for single step prediction using sequential and random batch generators

Pull Request - State: closed - Opened by Saran-nns over 4 years ago - 1 comment

#22 - dataset transformer

Pull Request - State: closed - Opened by Saran-nns over 4 years ago

#21 - bug spotted on Mac OS X

Pull Request - State: closed - Opened by alexlib over 4 years ago

#20 - Not able to animate using traja.plotting.animate

Issue - State: closed - Opened by dhivya-jayaraman about 5 years ago - 8 comments

#19 - Add support for adding static objects to plots

Issue - State: open - Opened by justinshenk over 5 years ago - 1 comment
Labels: enhancement

#18 - Add support for 3rd dimension (z)

Issue - State: open - Opened by justinshenk over 5 years ago
Labels: enhancement

#17 - Small changes to docs

Pull Request - State: closed - Opened by JarnoRFB over 5 years ago - 1 comment

#16 - Integrate binder

Issue - State: closed - Opened by JarnoRFB almost 6 years ago - 1 comment

#15 - Complete unit tests for plotting.py

Issue - State: closed - Opened by justinshenk almost 6 years ago - 1 comment
Labels: good first issue

#14 - Add a trajectory prediction model to models folder

Issue - State: closed - Opened by justinshenk almost 6 years ago

#13 - Test and complete method expected_sq_displacement in trajectory.py

Issue - State: closed - Opened by justinshenk almost 6 years ago - 1 comment

#12 - Complete unit tests for trajectory.py

Issue - State: closed - Opened by justinshenk almost 6 years ago - 2 comments
Labels: good first issue

#11 - Complete unit tests for test_trajadataframe.py

Issue - State: closed - Opened by justinshenk almost 6 years ago

#10 - GUI - Allow selecting multiple CSV files for comparing experimental groups

Issue - State: closed - Opened by justinshenk almost 6 years ago - 2 comments

#9 - Fix SettingWithCopyWarning caused in plotting.py

Issue - State: open - Opened by justinshenk almost 6 years ago

#8 - Add black black code formatting

Pull Request - State: closed - Opened by JarnoRFB almost 6 years ago

#7 - Fix few doc issue and some dependencies

Pull Request - State: closed - Opened by JarnoRFB about 6 years ago

#6 - `trip_gird` units make no sense after binning

Issue - State: closed - Opened by JarnoRFB about 6 years ago - 1 comment

#5 - Prefer type hints over docstring annotations

Issue - State: closed - Opened by JarnoRFB about 6 years ago - 1 comment

#4 - Use consistent string quoting

Issue - State: closed - Opened by JarnoRFB about 6 years ago - 4 comments