traitecoevo/APCalign issues and pull requests

#240 - New function and bumping to version 1.1.0

Pull Request - State: closed - Opened by wcornwell about 2 months ago - 1 comment

#239 - 238 genus family lookup

Pull Request - State: closed - Opened by wcornwell about 2 months ago

#238 - genus -> family lookup

Issue - State: closed - Opened by wcornwell about 2 months ago - 1 comment
Labels: enhancement

#237 - CRAN release 1.1.0

Issue - State: closed - Opened by wcornwell 2 months ago - 8 comments

#236 - dealing with cran and CI issues

Pull Request - State: closed - Opened by wcornwell 2 months ago

#235 - Failing gracefully edge case

Issue - State: closed - Opened by wcornwell 4 months ago - 5 comments

#234 - Tweaks

Pull Request - State: closed - Opened by slager 4 months ago - 1 comment

#233 - fixing badges after cran push

Pull Request - State: closed - Opened by wcornwell 4 months ago

#232 - Develop

Pull Request - State: closed - Opened by wcornwell 4 months ago

#231 - cleaning up

Pull Request - State: closed - Opened by wcornwell 4 months ago

#230 - Cran preparations

Pull Request - State: closed - Opened by fontikar 4 months ago

#229 - spelling fixes and removing special Mac install instructions

Pull Request - State: closed - Opened by wcornwell 4 months ago

#228 - Release APCalign 1.0.1

Issue - State: closed - Opened by fontikar 4 months ago - 1 comment

#227 - Release version 1.0.0

Pull Request - State: closed - Opened by dfalster 5 months ago

#226 - multicore options

Issue - State: closed - Opened by dfalster 5 months ago - 6 comments

#225 - Update roxygen & websites

Pull Request - State: closed - Opened by ehwenk 5 months ago

#224 - Add line breaks

Pull Request - State: closed - Opened by ehwenk 5 months ago

#223 - cleaning up the namespace

Pull Request - State: closed - Opened by wcornwell 5 months ago - 6 comments

#222 - depricated tidyselect expression

Issue - State: closed - Opened by wcornwell 5 months ago

#221 - better description of `imprecise_fuzzy_matches`

Pull Request - State: closed - Opened by ehwenk 5 months ago

#220 - Apply faster implementation of word throughout

Pull Request - State: closed - Opened by dfalster 5 months ago - 1 comment

#219 - Add fuzzy match arguments to `create_taxonomic_update_lookup`

Pull Request - State: closed - Opened by ehwenk 5 months ago

#218 - Option if fuzzy_match accepted list is empty for a given letter

Pull Request - State: closed - Opened by ehwenk 5 months ago - 2 comments

#217 - Code formatting and one new test

Pull Request - State: closed - Opened by wcornwell 5 months ago - 1 comment

#216 - Switch adist to stringdist

Pull Request - State: closed - Opened by ehwenk 5 months ago - 1 comment

#215 - Swap adist for stringdist

Issue - State: closed - Opened by dfalster 5 months ago - 5 comments

#214 - Identifier string fix

Pull Request - State: closed - Opened by ehwenk 5 months ago - 1 comment

#213 - Allow n_allowed > 1 in fuzzy_match

Pull Request - State: closed - Opened by ehwenk 5 months ago

#212 - create_taxonomic_update_lookup doesn't include `fuzzy = TRUE` argument

Issue - State: closed - Opened by ehwenk 5 months ago - 1 comment

#211 - Added skip if github is down

Pull Request - State: closed - Opened by fontikar 5 months ago

#210 - Fuzzy-match: subset accepted list to same first letter

Pull Request - State: closed - Opened by ehwenk 5 months ago

#209 - Fuzzy matching

Pull Request - State: closed - Opened by ehwenk 5 months ago

#208 - removing unused function option and updating readme

Pull Request - State: closed - Opened by wcornwell 5 months ago

#207 - maybe this works?

Pull Request - State: closed - Opened by wcornwell 5 months ago

#206 - Updated pkgdown and fixed error in #199

Pull Request - State: closed - Opened by fontikar 5 months ago

#205 - fix CRAN issue before release

Issue - State: closed - Opened by wcornwell 5 months ago - 5 comments

#204 - trying to update actions to best practices

Pull Request - State: closed - Opened by wcornwell 5 months ago

#203 - Removing hard limit on current downloads and documentation wording improvements

Pull Request - State: closed - Opened by wcornwell 5 months ago - 4 comments

#202 - better family-level matching algorithms

Pull Request - State: closed - Opened by ehwenk 6 months ago

#201 - Message updates

Pull Request - State: closed - Opened by ehwenk 6 months ago - 2 comments

#200 - Standardise names updates

Pull Request - State: closed - Opened by ehwenk 6 months ago

#199 - updating website

Issue - State: closed - Opened by wcornwell 6 months ago - 5 comments

#198 - 108 make output messages optional

Pull Request - State: closed - Opened by wcornwell 6 months ago - 1 comment

#197 - Suggested changes to standardise names

Issue - State: closed - Opened by ehwenk 6 months ago - 1 comment

#196 - Refactor load_taxonomic_resources to increase speed

Pull Request - State: closed - Opened by dfalster 6 months ago - 3 comments

#195 - updating families

Issue - State: closed - Opened by ehwenk 6 months ago - 4 comments
Labels: enhancement

#194 - Caching UI and documentation

Issue - State: closed - Opened by wcornwell 6 months ago - 2 comments

#193 - Small fixes

Pull Request - State: closed - Opened by ehwenk 6 months ago

#192 - Update doc

Pull Request - State: closed - Opened by fontikar 6 months ago

#191 - Shortening `match_taxa`

Issue - State: open - Opened by fontikar 6 months ago
Labels: enhancement

#190 - Testing framework of benchmarks

Issue - State: closed - Opened by fontikar 6 months ago - 2 comments

#189 - NAMESPACE check Imports whole package `dplyr` vs importing specific functions

Issue - State: closed - Opened by fontikar 6 months ago - 5 comments

#188 - `lintr` line breaks, some lines too long

Issue - State: closed - Opened by fontikar 6 months ago

#187 - load_taxonomic_resources is slow

Issue - State: closed - Opened by fontikar 6 months ago - 4 comments

#186 - Added documentation on how to be more reproducible with APCalign

Pull Request - State: closed - Opened by fontikar 6 months ago - 1 comment

#185 - switch arrow dependancy back to CRAN once arrow macOS binary bug is fixed

Issue - State: closed - Opened by wcornwell 6 months ago - 3 comments
Labels: bug

#184 - Parquet workaround

Pull Request - State: closed - Opened by wcornwell 6 months ago

#183 - possible work around for arrow and fixing current data download bug

Pull Request - State: closed - Opened by wcornwell 6 months ago

#182 - Refining graceful failing when GitHub is down

Pull Request - State: closed - Opened by fontikar 7 months ago

#181 - Update fuzzy_match.R

Pull Request - State: closed - Opened by ehwenk 7 months ago - 6 comments

#180 - Unexpected aligned name - old vs. new spelling

Issue - State: closed - Opened by a-orn 7 months ago - 12 comments

#179 - Bug fix, re-number match algorithms

Pull Request - State: closed - Opened by ehwenk 8 months ago

#178 - Issues with arrow on cran

Issue - State: closed - Opened by dfalster 8 months ago - 1 comment

#177 - Enhancement of `identifier` argument, to accept columns and not a string

Issue - State: closed - Opened by fontikar 8 months ago - 1 comment
Labels: enhancement

#176 - Not picking up lowercase genus

Issue - State: closed - Opened by ehwenk 8 months ago - 1 comment
Labels: bug

#175 - work on APCalign vignettes/articles & function descriptions

Pull Request - State: closed - Opened by ehwenk 9 months ago

#174 - Algorithm fixes

Pull Request - State: closed - Opened by ehwenk 9 months ago

#173 - CRAN prep and minor fixes to documentation

Pull Request - State: closed - Opened by fontikar 11 months ago - 2 comments

#172 - Release APCalign 0.1.3

Issue - State: closed - Opened by fontikar 11 months ago - 1 comment

#171 - Update develop to have new changes

Pull Request - State: closed - Opened by fontikar 11 months ago

#170 - Graceful failures are now okay

Pull Request - State: closed - Opened by fontikar 11 months ago

#169 - simplfying data download and adding a trycatch

Pull Request - State: closed - Opened by wcornwell 11 months ago - 4 comments

#168 - `full` argument documentation slightly wrong

Issue - State: closed - Opened by yangsophieee 11 months ago

#167 - map in APNI genera

Pull Request - State: closed - Opened by ehwenk 11 months ago - 1 comment

#166 - fix how genus determined

Pull Request - State: closed - Opened by ehwenk 11 months ago

#165 - fix scientific_name_id

Pull Request - State: closed - Opened by ehwenk 11 months ago

#164 - Graceful testing for load_taxonomic_resources

Pull Request - State: closed - Opened by fontikar 12 months ago - 3 comments

#163 - Internet resources should fail gracefully

Issue - State: closed - Opened by fontikar 12 months ago - 1 comment

#162 - multicore

Issue - State: closed - Opened by wcornwell 12 months ago - 1 comment
Labels: enhancement

#161 - Upgrade to default_version

Pull Request - State: closed - Opened by fontikar 12 months ago

#160 - Getting latest release version number

Issue - State: closed - Opened by fontikar 12 months ago - 3 comments

#159 - Minor PR: CRAN preparation

Pull Request - State: closed - Opened by fontikar 12 months ago

#158 - ensure first matches only look for species/infraspecific

Pull Request - State: closed - Opened by ehwenk 12 months ago - 3 comments

#157 - Genus sp. names in resources$`APC list (known names)`$canonical_name causing matching at the species level instead of genus level

Issue - State: closed - Opened by wcornwell 12 months ago - 5 comments

#156 - Bug in fuzzy match

Pull Request - State: closed - Opened by ehwenk 12 months ago

#155 - rename `imprecise_fuzzy_matches` to `two_level_fuzzy`?

Issue - State: closed - Opened by wcornwell about 1 year ago - 2 comments
Labels: question

#154 - Error caused by accepted list name?

Issue - State: closed - Opened by yangsophieee about 1 year ago - 12 comments

#153 - Prepping CRAN

Pull Request - State: closed - Opened by fontikar about 1 year ago - 1 comment

#152 - draft figure--any thoughts?

Issue - State: closed - Opened by wcornwell about 1 year ago - 5 comments

#151 - new repo?

Issue - State: closed - Opened by wcornwell about 1 year ago - 4 comments

#150 - Possibly place APNI "perfect matches" ahead of APC "fuzzy matches"

Issue - State: closed - Opened by ehwenk about 1 year ago - 1 comment

#149 - Minor changes

Pull Request - State: closed - Opened by ehwenk about 1 year ago

#148 - move matches 5a, 5b, 6a, 6b to first in sequence

Pull Request - State: closed - Opened by ehwenk about 1 year ago

#147 - Function documentation

Pull Request - State: closed - Opened by ehwenk about 1 year ago - 1 comment

#146 - add row_number to incoming list of names in align_names

Issue - State: closed - Opened by ehwenk about 1 year ago - 3 comments

#145 - add scientific_name

Pull Request - State: closed - Opened by ehwenk about 1 year ago

#144 - Native edge cases

Pull Request - State: closed - Opened by wcornwell about 1 year ago - 4 comments

GitHub / traitecoevo/APCalign issues and pull requests