Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / tongzhugroup/mddatasetbuilder issues and pull requests

#227 - chore(ci): use astral-sh/setup-uv action

Pull Request - State: closed - Opened by njzjz-bot about 1 month ago - 1 comment

#226 - build(deps): bump pypa/cibuildwheel from 2.20 to 2.21

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#225 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] 3 months ago - 1 comment

#224 - fix: fix compatibility with NumPy 2.0

Pull Request - State: closed - Opened by njzjz 3 months ago - 1 comment

#223 - build(deps): bump pypa/cibuildwheel from 2.19 to 2.20

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#222 - fix(ci): build sdist only in the sdist step

Pull Request - State: closed - Opened by njzjz 5 months ago

#221 - ci(wheel): use `build[uv]` frontend

Pull Request - State: closed - Opened by njzjz 5 months ago - 1 comment

#220 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 1 comment

#219 - feat: support `datasetbuilder --version`

Pull Request - State: closed - Opened by njzjz 6 months ago - 1 comment

#218 - support `python -m mddatasetbuilder`

Pull Request - State: closed - Opened by njzjz 6 months ago - 1 comment

#217 - fix: type of ncpus should be int

Pull Request - State: closed - Opened by njzjz 6 months ago

#216 - feat: support assigning ncpus for qmcalc

Pull Request - State: closed - Opened by njzjz 6 months ago - 1 comment

#215 - ci: add pyright checker

Pull Request - State: closed - Opened by njzjz 6 months ago - 1 comment

#213 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 1 comment

#212 - build(deps): bump pypa/cibuildwheel from 2.17 to 2.18

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#211 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 1 comment

#210 - ci(wheel): downgrade from py39 to py38 for macos

Pull Request - State: closed - Opened by njzjz 7 months ago - 1 comment

#209 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 1 comment

#208 - build: use uv for cibuildwheel

Pull Request - State: closed - Opened by njzjz 7 months ago - 1 comment

#207 - build(deps): bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 4 comments
Labels: dependencies

#206 - build(deps): bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#205 - build(deps): bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#204 - build(deps): bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#203 - CI: Setup Dependabot for GitHub Actions

Pull Request - State: closed - Opened by njzjz-bot 7 months ago

#202 - build: migrate to scikit-build-core

Pull Request - State: closed - Opened by njzjz 7 months ago - 1 comment

#201 - CI: setup tox-uv

Pull Request - State: closed - Opened by njzjz 7 months ago - 1 comment

#200 - feat(build): Add Git archives version files

Pull Request - State: closed - Opened by njzjz-bot 7 months ago - 1 comment

#199 - bump cibuildwheel to 2.17

Pull Request - State: closed - Opened by njzjz 8 months ago - 1 comment

#198 - CI: Bump codecov/codecov-action from v3 to v4

Pull Request - State: closed - Opened by njzjz-bot 8 months ago

#197 - can datasetbuilder help to add hydrogen atoms to molecules and guess spins of fragments?

Issue - State: open - Opened by notbws 9 months ago - 1 comment
Labels: enhancement

#196 - qmcalc always occupies all the cpus

Issue - State: closed - Opened by notbws 9 months ago
Labels: enhancement

#195 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago - 2 comments

#194 - use M1 to build macosx_universal2

Pull Request - State: closed - Opened by njzjz 10 months ago - 2 comments

#193 - fix default nproc for macos and windows

Pull Request - State: closed - Opened by njzjz 11 months ago - 1 comment

#191 - set default nproc to the number of logical CPUs the current process can use

Pull Request - State: closed - Opened by njzjz about 1 year ago - 1 comment

#189 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#187 - move to ruff formatter

Pull Request - State: closed - Opened by njzjz about 1 year ago - 1 comment

#186 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#185 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#184 - fix extension filename

Pull Request - State: closed - Opened by njzjz about 1 year ago - 1 comment

#182 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#181 - fix pypa/gh-action-pypi-publish tag

Pull Request - State: closed - Opened by njzjz about 1 year ago - 1 comment

#180 - Update README.md

Pull Request - State: closed - Opened by njzjz about 1 year ago - 1 comment

#179 - keep `n_init` parameters for kmeans

Pull Request - State: closed - Opened by njzjz about 1 year ago - 1 comment

#178 - enable ruff configurations

Pull Request - State: closed - Opened by njzjz about 1 year ago - 1 comment

#177 - use Python limited API

Pull Request - State: closed - Opened by njzjz over 1 year ago - 1 comment

#176 - pin pypa/gh-action-pypi-publish to v1

Pull Request - State: closed - Opened by njzjz over 1 year ago

#175 - use OIDC to publish packages

Pull Request - State: closed - Opened by njzjz over 1 year ago

#174 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#173 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#172 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#171 - always pass codecov status

Pull Request - State: closed - Opened by njzjz over 1 year ago - 1 comment

#170 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#169 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago - 1 comment

#168 - format numpydoc

Pull Request - State: closed - Opened by njzjz almost 2 years ago - 1 comment

#167 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#166 - add pre-commit config and lint

Pull Request - State: closed - Opened by njzjz almost 2 years ago - 1 comment

#165 - Revert "set CYTHON_LIMITED_API to 1"

Pull Request - State: closed - Opened by njzjz almost 2 years ago

#164 - define Py_LIMITED_API

Pull Request - State: closed - Opened by njzjz almost 2 years ago

#163 - set CYTHON_LIMITED_API to 1

Pull Request - State: closed - Opened by njzjz almost 2 years ago - 1 comment

#162 - fix tox 4 compatibility

Pull Request - State: closed - Opened by njzjz almost 2 years ago - 1 comment

#161 - update test configs

Pull Request - State: closed - Opened by njzjz almost 2 years ago - 1 comment

#160 - use the logger instead of the global logging

Pull Request - State: closed - Opened by njzjz almost 2 years ago - 1 comment

#159 - disable tqdm when stderr is redirected

Pull Request - State: closed - Opened by njzjz almost 2 years ago - 1 comment

#158 - fix reading atomic type from dump files

Pull Request - State: closed - Opened by njzjz almost 2 years ago - 1 comment

#157 - use `exist_ok=True` and remove `_mkdir`

Pull Request - State: closed - Opened by njzjz almost 2 years ago - 1 comment

#156 - deprecate base64 for compress block

Pull Request - State: closed - Opened by njzjz almost 2 years ago - 1 comment

#155 - build macosx_universal2 wheels

Pull Request - State: closed - Opened by njzjz about 2 years ago - 1 comment

#154 - drop Python 3.6 support

Pull Request - State: closed - Opened by njzjz about 2 years ago - 1 comment

#153 - build wheels and upload to pypi

Pull Request - State: closed - Opened by njzjz about 2 years ago - 1 comment

#152 - migrate to openbabel native pbc; support LAMMPS non-orthogonal box

Pull Request - State: closed - Opened by njzjz about 2 years ago - 1 comment

#151 - fix the path of readme

Pull Request - State: closed - Opened by njzjz about 2 years ago

#150 - replace deprecated `np.int` with `int`

Pull Request - State: closed - Opened by njzjz about 2 years ago

#149 - fix coverage for multiprocessing

Pull Request - State: closed - Opened by njzjz about 2 years ago - 1 comment

#148 - enable isolated_build

Pull Request - State: closed - Opened by njzjz about 2 years ago - 1 comment

#147 - debug

Pull Request - State: closed - Opened by njzjz about 2 years ago - 1 comment

#146 - move tests out of the package

Pull Request - State: closed - Opened by njzjz about 2 years ago - 1 comment

#145 - migrate from setup.py to pyproject.toml

Pull Request - State: closed - Opened by njzjz about 2 years ago - 1 comment

#141 - breaking: add "force" to default cli Gaussian keywords; update cli docs

Pull Request - State: closed - Opened by njzjz over 2 years ago - 1 comment

#138 - chore(docs): add a citation badge

Pull Request - State: closed - Opened by njzjz about 3 years ago

#137 - How to set the time step interval in the reaction.json?

Issue - State: closed - Opened by Eipgen about 3 years ago - 2 comments

#113 - Weekly Digest (3 November, 2019 - 10 November, 2019)

Issue - State: closed - Opened by weekly-digest[bot] about 5 years ago - 1 comment
Labels: weekly-digest

#112 - Weekly Digest (27 October, 2019 - 3 November, 2019)

Issue - State: closed - Opened by weekly-digest[bot] about 5 years ago - 1 comment
Labels: weekly-digest

#111 - Weekly Digest (20 October, 2019 - 27 October, 2019)

Issue - State: closed - Opened by weekly-digest[bot] about 5 years ago - 1 comment
Labels: weekly-digest

#110 - Weekly Digest (13 October, 2019 - 20 October, 2019)

Issue - State: closed - Opened by weekly-digest[bot] about 5 years ago - 1 comment
Labels: weekly-digest

#100 - test release

Pull Request - State: closed - Opened by njzjz about 5 years ago - 1 comment
Labels: size/S, PR: draft

#99 - fix: update pypi token

Pull Request - State: closed - Opened by njzjz about 5 years ago - 2 comments
Labels: size/XS, PR: merged, squash when passing

#98 - chore: delete main.workflow

Pull Request - State: closed - Opened by njzjz about 5 years ago - 1 comment
Labels: PR: merged, size/S, squash when passing

#97 - Weekly Digest (6 October, 2019 - 13 October, 2019)

Issue - State: closed - Opened by weekly-digest[bot] about 5 years ago - 1 comment
Labels: weekly-digest

#96 - Restyle fix: add coverage & move to utils

Pull Request - State: closed - Opened by restyled-io[bot] about 5 years ago - 3 comments
Labels: PR: unreviewed, size/XL

#95 - fix: add coverage & move to utils

Pull Request - State: closed - Opened by njzjz about 5 years ago - 8 comments
Labels: PR: merged, size/L

#94 - Restyle fix: update detect module

Pull Request - State: closed - Opened by restyled-io[bot] about 5 years ago - 5 comments
Labels: PR: unreviewed, size/M

#93 - fix: update detect module

Pull Request - State: closed - Opened by njzjz about 5 years ago - 11 comments
Labels: PR: merged, size/M

#92 - Weekly Digest (29 September, 2019 - 6 October, 2019)

Issue - State: closed - Opened by weekly-digest[bot] about 5 years ago - 1 comment
Labels: weekly-digest

#91 - Weekly Digest (22 September, 2019 - 29 September, 2019)

Issue - State: closed - Opened by weekly-digest[bot] about 5 years ago - 1 comment
Labels: weekly-digest

#90 - fix: detect_multiplicity bug

Pull Request - State: closed - Opened by njzjz about 5 years ago - 3 comments
Labels: size/XS, PR: merged, squash when passing

#89 - fix: release to pypi

Pull Request - State: closed - Opened by njzjz about 5 years ago - 1 comment
Labels: PR: merged, size/S, squash when passing

#88 - fix: support all elements' spin multiplicities

Pull Request - State: closed - Opened by njzjz about 5 years ago - 4 comments
Labels: PR: merged, size/S, squash when passing

#87 - fix: detect ring bug

Pull Request - State: closed - Opened by njzjz about 5 years ago - 4 comments
Labels: size/XS, PR: merged, squash when passing