tomasstolker/species issues and pull requests

#128 - Discussion: Use of specutils.Spectrum class?

Issue - State: open - Opened by kelle 3 months ago - 2 comments
Labels: type: discussion, type: idea

#127 - NumbaNotImplementedError for the get_residuals command after updating species to use Sonora Diamondback.

Issue - State: closed - Opened by cianotoole11 3 months ago - 6 comments
Labels: type: bug

#126 - In plot_posterior: showing priors for evolution calculations and enabling easy overplotting of results

Issue - State: open - Opened by gabrielastro 3 months ago
Labels: type: bug, type: feature, priority: medium, implementation: intermediate

#125 - Beiler phot

Pull Request - State: closed - Opened by wbalmer 4 months ago - 2 comments

#124 - Small suggestions for CompareSpectra

Issue - State: closed - Opened by gabrielastro 4 months ago - 2 comments
Labels: type: feature, type: question, priority: low, type: docs, implementation: intermediate

#123 - Allowing for negative extinction when plotting too

Issue - State: closed - Opened by gabrielastro 4 months ago - 6 comments
Labels: type: feature

#122 - Adding Sonora Diamondback to library of grid models?

Issue - State: closed - Opened by cianotoole11 4 months ago - 3 comments
Labels: type: feature, good first issue, priority: medium, implementation: intermediate

#121 - Discrepancy in meaning of C/O for certain models

Issue - State: closed - Opened by muuud 4 months ago - 5 comments
Labels: type: bug, priority: high, implementation: easy

#120 - Error inflation for spectral fitting

Issue - State: open - Opened by gabrielastro 4 months ago
Labels: type: feature, priority: low, type: docs, implementation: intermediate

#119 - Plotting only the marginalised posteriors

Issue - State: open - Opened by gabrielastro 4 months ago - 2 comments
Labels: type: feature, wontfix, implementation: complex

#118 - Non-converged (?) exo-rem models in current grid

Issue - State: open - Opened by gabrielastro 4 months ago - 5 comments
Labels: type: question, type: discussion

#117 - Smoothing spectral data

Issue - State: closed - Opened by gabrielastro 4 months ago - 2 comments
Labels: enhancement, question

#116 - Errorbars for synthetic photometry

Issue - State: open - Opened by gabrielastro 5 months ago
Labels: type: feature, priority: low, implementation: intermediate

#115 - Negative blackbody radius :)

Issue - State: closed - Opened by gabrielastro 5 months ago - 5 comments
Labels: type: bug, type: feature, priority: medium, type: docs, implementation: intermediate

#114 - Reddening slope ism_red below unity truncates model wavelength range & Slightly too narrow wavelength range in spectral files

Issue - State: closed - Opened by gabrielastro 5 months ago - 8 comments
Labels: type: feature

#113 - Make the reported luminosity be the luminosity only of the atmosphere

Issue - State: closed - Opened by gabrielastro 5 months ago - 5 comments
Labels: type: feature, type: question, priority: medium, implementation: intermediate

#112 - In FitModel: lower limit for disk_teff mysteriously changes to 100 K?

Issue - State: closed - Opened by gabrielastro 5 months ago - 3 comments
Labels: type: question

#111 - small bugfix in setup_retrieval without spectra

Pull Request - State: closed - Opened by wbalmer 5 months ago

#110 - Plotting Teff(t) with plot_cooling

Issue - State: closed - Opened by gabrielastro 5 months ago - 7 comments
Labels: type: feature

#109 - Indicating model points on posterior corner plot

Issue - State: open - Opened by gabrielastro 5 months ago - 2 comments
Labels: type: feature, type: question, priority: low, implementation: intermediate

#108 - Flushing the print buffer when running MultiNest

Issue - State: closed - Opened by gabrielastro 6 months ago - 4 comments
Labels: wontfix

#107 - Add parameter to add_model for extending spectra with a powerlaw

Issue - State: closed - Opened by tomasstolker 6 months ago - 1 comment
Labels: type: feature, priority: low, implementation: intermediate

#104 - Units in plot_spectrum, upper limits, photometry off model wavelength range, magnitude conversion, and other small things

Issue - State: open - Opened by gabrielastro 6 months ago - 5 comments
Labels: type: bug, type: feature, type: question

#103 - updated exo-rem grids with higher metallicities

Issue - State: open - Opened by wbalmer 7 months ago - 1 comment
Labels: enhancement

#102 - Problem in add_custom_model with data_path

Issue - State: closed - Opened by cosmicbabs 7 months ago - 2 comments
Labels: type: bug

#100 - Upper limits on photometric measurements?

Issue - State: open - Opened by wbalmer 9 months ago - 1 comment
Labels: question

#99 - Any in cloud params vs kzz bug

Pull Request - State: closed - Opened by wbalmer 10 months ago

#98 - Small fixes

Pull Request - State: closed - Opened by wbalmer 10 months ago - 2 comments

#97 - sonora elf-owl as successor to bobcat and cholla

Issue - State: closed - Opened by wbalmer 11 months ago - 26 comments
Labels: enhancement

#96 - Different fsed for cloud species in retrieval

Issue - State: closed - Opened by wbalmer 11 months ago - 4 comments
Labels: enhancement

#95 - pypi package version

Issue - State: closed - Opened by nenasedk 12 months ago - 1 comment
Labels: enhancement

#94 - wavelength / spectral spacing for exo-rem-highres grid

Issue - State: closed - Opened by wbalmer 12 months ago - 9 comments
Labels: bug

#93 - Using wavel_range with database.add_model()

Issue - State: closed - Opened by gabrielastro 12 months ago - 5 comments
Labels: bug, enhancement

#92 - Installation error: No matching distribution found for matplotlib~=3.8.0

Issue - State: closed - Opened by gabrielastro 12 months ago - 3 comments
Labels: question

#91 - Retrieval with radial velocity / rotational broadening vsini

Issue - State: closed - Opened by Tenivar about 1 year ago - 2 comments
Labels: enhancement

#90 - Higher-order interpolation?

Issue - State: closed - Opened by gabrielastro about 1 year ago - 3 comments
Labels: question

#89 - Running multinest or ultranest in parallel?

Issue - State: closed - Opened by gabrielastro about 1 year ago - 11 comments
Labels: bug

#88 - Enhancing plot_spectrum a bit

Issue - State: closed - Opened by gabrielastro about 1 year ago - 21 comments
Labels: enhancement, question

#87 - Fitting with nested sampling (UltraNest or MultiNest)

Issue - State: closed - Opened by gabrielastro about 1 year ago - 4 comments
Labels: enhancement

#86 - Various small things

Issue - State: closed - Opened by gabrielastro about 1 year ago - 7 comments
Labels: enhancement

#85 - Add AtmosphericRetrieval.run_dynesty

Pull Request - State: closed - Opened by wbalmer about 1 year ago - 2 comments

#84 - Adding dynesty support (especially to retrievals)

Issue - State: closed - Opened by wbalmer about 1 year ago - 8 comments
Labels: enhancement

#83 - Making unpacking/storing of atmospheric models more memory-efficient

Issue - State: closed - Opened by gabrielastro about 1 year ago - 10 comments
Labels: enhancement, question

#82 - Add gradient pt parameterization from Zhang+23

Pull Request - State: closed - Opened by wbalmer about 1 year ago - 9 comments

#81 - Database problem: OSError: Unable to open file (file is already open for read-only)

Issue - State: closed - Opened by gabrielastro about 1 year ago - 4 comments
Labels: bug

#80 - database overview: list_models() and verbosity control?

Issue - State: closed - Opened by gabrielastro about 1 year ago - 4 comments
Labels: enhancement

#80 - database overview: list_models() and verbosity control?

Issue - State: open - Opened by gabrielastro about 1 year ago

#79 - Tutorial "Fitting data with a grid of model spectra" (and a few other pages): small things

Issue - State: open - Opened by gabrielastro about 1 year ago

#79 - Tutorial "Fitting data with a grid of model spectra" (and a few other pages): small things

Issue - State: closed - Opened by gabrielastro about 1 year ago - 5 comments
Labels: enhancement

#78 - Adding priors to corner plot output in plot_posterior

Issue - State: closed - Opened by gabrielastro about 1 year ago - 12 comments
Labels: enhancement

#77 - Adding an arbitrary offset and scaling to atmospheric models

Issue - State: open - Opened by gabrielastro about 1 year ago

#77 - Adding an arbitrary offset and scaling to atmospheric models

Issue - State: closed - Opened by gabrielastro about 1 year ago - 16 comments
Labels: enhancement

#76 - FitModel including disk_teff and disk_radius: TypeCheckError

Issue - State: closed - Opened by gabrielastro about 1 year ago - 6 comments
Labels: bug, good first issue

#75 - add companion data for GJ 758 B

Pull Request - State: closed - Opened by mperrin about 1 year ago - 1 comment

#74 - BT-NextGen (or similar stellar model) with Fe/H < 0?

Issue - State: closed - Opened by wbalmer over 1 year ago - 14 comments
Labels: enhancement

#73 - Can not find the atmosphere model associated with the 'linder2019-petitCODE-metal_0.0' when running get_photometry

Issue - State: closed - Opened by maxwellmb over 1 year ago - 2 comments
Labels: bug, enhancement

#72 - BEX Exoplanet Grids

Issue - State: closed - Opened by maxwellmb over 1 year ago - 3 comments
Labels: enhancement

#71 - Support for Python 3.11

Pull Request - State: closed - Opened by tomasstolker over 1 year ago

#70 - TypeCheckError: argument "deredden" (None)

Issue - State: closed - Opened by f4hzg over 1 year ago - 5 comments
Labels: bug

#69 - SPHINX M-dwarf grid

Issue - State: closed - Opened by wbalmer over 1 year ago - 2 comments
Labels: enhancement

#68 - Retrieving free abundances that vary with altitude

Pull Request - State: closed - Opened by tomasstolker over 1 year ago

#67 - Fit tool for estimating ages and masses from luminosities

Pull Request - State: closed - Opened by tomasstolker over 1 year ago

#66 - Changed use of interp2d to RegularGridInterpolator

Pull Request - State: closed - Opened by tomasstolker over 1 year ago

#65 - interp2d deprecation in SciPy 1.10 leads to too many warnings printed during sampling

Issue - State: closed - Opened by wbalmer over 1 year ago - 1 comment
Labels: bug

#64 - [bug] Flux-To-Magnitude conversion: error propagation

Issue - State: closed - Opened by nenasedk almost 2 years ago - 1 comment
Labels: bug

#63 - [bug] Writing to hdf5 file fails with run_multinest and run_ultranest.

Issue - State: closed - Opened by nenasedk almost 2 years ago - 8 comments
Labels: bug, good first issue

#62 - CVE-2007-4559 Patch

Pull Request - State: closed - Opened by TrellixVulnTeam about 2 years ago

#61 - add ATMO-low logg model grid from Petrus+22?

Issue - State: closed - Opened by wbalmer over 2 years ago - 2 comments
Labels: enhancement

#60 - Support for converting line luminosities into accretion luminosities

Pull Request - State: closed - Opened by tomasstolker over 2 years ago

#59 - BTSettl-CIFIST models error with read_model.py and scipy interpnd

Issue - State: closed - Opened by logan-pearce over 2 years ago - 2 comments
Labels: bug, question

#58 - Notebook tutorial for atmospheric retrievals and many new features

Pull Request - State: closed - Opened by tomasstolker almost 3 years ago

#57 - Retrieving a weighted combination of two clouds and some small updates

Pull Request - State: closed - Opened by tomasstolker about 3 years ago

#56 - Refactoring of add_model and support for Sonora models

Pull Request - State: closed - Opened by tomasstolker about 3 years ago - 1 comment

#55 - Support for fitting blended stars/companions with FitModel

Pull Request - State: closed - Opened by tomasstolker about 3 years ago - 1 comment

#54 - New features for AtmosphericRetrieval

Pull Request - State: closed - Opened by tomasstolker about 3 years ago

#53 - Error in loglikelihood function: returned non-finite number

Issue - State: closed - Opened by wbalmer over 3 years ago - 3 comments
Labels: bug, question

#52 - Flux conservation for retrieving physical temperature profiles

Pull Request - State: closed - Opened by tomasstolker over 3 years ago

#51 - Framework for atmospheric retrievals with petitRADTRANS

Pull Request - State: closed - Opened by tomasstolker over 3 years ago

#50 - Warning: 'PyMultiNest could not be imported.'

Issue - State: closed - Opened by suvadip31 over 3 years ago - 4 comments
Labels: type: question

#49 - Error during installation

Issue - State: closed - Opened by suvadip31 over 3 years ago - 4 comments
Labels: question

#48 - Empirical low-gravity spectra and development of comparison tools

Pull Request - State: closed - Opened by tomasstolker over 3 years ago

#47 - Spectra of directly imaged planets and brown dwarfs

Pull Request - State: closed - Opened by tomasstolker over 3 years ago

#46 - Running example fails with UnboundLocalError: local variable 'integrand1' referenced before assignment ...

Issue - State: closed - Opened by mfeldt almost 4 years ago - 9 comments
Labels: bug, question

#45 - Added functionalities for the analysis of emission lines

Pull Request - State: closed - Opened by tomasstolker almost 4 years ago

#44 - Comply with detector type update on SVO website

Pull Request - State: closed - Opened by tomasstolker almost 4 years ago

#43 - spectral_type

Issue - State: closed - Opened by henrikruh almost 4 years ago - 1 comment
Labels: bug

#42 - Added the smooth_spectrum and resample_spectrum methods to ModelBox

Pull Request - State: closed - Opened by tomasstolker almost 4 years ago

#41 - Added wavel_resample and phot_type parameters

Pull Request - State: closed - Opened by tomasstolker almost 4 years ago - 1 comment