Ecosyste.ms: Issues

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GitHub / tolkit/gfatk issues and pull requests

#18 - Use a hashset to automatically dedup node neighbours

Pull Request - State: closed - Opened by lavafroth 11 months ago

#17 - ci: create automatic release workflow

Pull Request - State: closed - Opened by lavafroth 11 months ago - 1 comment

#16 - Hashmap for NodeIndex <-> segment ID

Issue - State: open - Opened by ASLeonard over 1 year ago - 1 comment

#15 - Allow any name for GFA segments, lines, paths etc.

Issue - State: closed - Opened by Euphrasiologist over 1 year ago

#14 - Obtain path sequences as specified in P-lines

Issue - State: closed - Opened by dirkjanvw over 1 year ago - 11 comments

#13 - gfatk linear usage questions

Issue - State: closed - Opened by Orz-CQ about 2 years ago - 4 comments

#12 - Format GFA to be compatible with gfatk

Issue - State: closed - Opened by Euphrasiologist over 2 years ago

#11 - Fix linear

Pull Request - State: closed - Opened by Euphrasiologist over 2 years ago

#10 - Add upper node number limit to `gfatk linear`

Issue - State: closed - Opened by Euphrasiologist over 2 years ago

#9 - `gfatk linear -ei` bug

Issue - State: closed - Opened by Euphrasiologist over 2 years ago - 1 comment

#7 - Restrict linear based on node number

Issue - State: closed - Opened by Euphrasiologist over 2 years ago

#6 - Extract multiple mito contigs

Issue - State: closed - Opened by Euphrasiologist over 2 years ago - 1 comment

#4 - Add `gfatk extract-chloro` command

Issue - State: closed - Opened by Euphrasiologist over 2 years ago

#3 - Allow user supplied path in `gfatk linear`

Issue - State: closed - Opened by Euphrasiologist over 2 years ago

#2 - Remove redundancy from end of last joined contig

Issue - State: open - Opened by Euphrasiologist over 2 years ago - 1 comment

#1 - `gfatk linear` should linearise within subgraphs

Issue - State: closed - Opened by Euphrasiologist over 2 years ago