tlubitz/SBtab issues and pull requests

#119 - What is the reason for the openpyxl <= 2.6.4 requirement?

Issue - State: open - Opened by danolson1 over 1 year ago

#118 - CVE-2021-41496 (Medium) detected in numpy-1.20.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl - autoclosed

Issue - State: closed - Opened by mend-bolt-for-github[bot] about 2 years ago - 1 comment
Labels: security vulnerability

#117 - Could you make scripts available through the pip installation?

Issue - State: open - Opened by smoretti over 2 years ago - 1 comment

#116 - CVE-2021-34141 (Medium) detected in numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl

Issue - State: open - Opened by mend-bolt-for-github[bot] almost 3 years ago
Labels: Mend: dependency security vulnerability

#115 - CVE-2021-33430 (Medium) detected in numpy-1.20.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl - autoclosed

Issue - State: closed - Opened by mend-bolt-for-github[bot] almost 3 years ago - 1 comment
Labels: Mend: dependency security vulnerability

#114 - SBtab to SBML conversion does not save references

Issue - State: open - Opened by DanielRoodzant about 3 years ago

#113 - bug when there are no rows starting with "!"

Issue - State: closed - Opened by eladnoor over 3 years ago - 1 comment

#112 - Conversion to and from dataframes does not work

Issue - State: open - Opened by danolson1 over 3 years ago - 1 comment

#111 - add_sbtab_string() missing 1 required positional argument: 'filename'

Issue - State: closed - Opened by Anha101 over 3 years ago - 1 comment

#110 - Hochkomma

Issue - State: closed - Opened by liebermeister almost 4 years ago - 1 comment

#109 - Show units

Pull Request - State: closed - Opened by liebermeister almost 4 years ago

#108 - Datei "objtables.tsv"

Issue - State: closed - Opened by liebermeister almost 4 years ago - 1 comment

#107 - No indication of open source license

Issue - State: closed - Opened by eladnoor almost 4 years ago

#106 - changed header_row in from_data_frame to str

Pull Request - State: closed - Opened by tlubitz almost 4 years ago

#105 - error when changing attribute in SBtab

Issue - State: closed - Opened by eladnoor almost 4 years ago - 2 comments

#104 - Fix: if SBtab Table is added to SBtabDocument, do not rely on it havi…

Pull Request - State: closed - Opened by tlubitz almost 4 years ago - 4 comments

#103 - adding SBtabTable to SBtabDocument fails

Issue - State: closed - Opened by eladnoor almost 4 years ago

#102 - Missing annotations when converting from SBML3 to SBtab

Issue - State: open - Opened by smoretti about 4 years ago - 2 comments

#101 - Modified commandline tools; added commandline tools for direct SBtab …

Pull Request - State: closed - Opened by liebermeister about 4 years ago - 3 comments

#100 - CVE-2020-13091 (High) detected in pandas-0.24.2-cp27-cp27mu-manylinux1_x86_64.whl - autoclosed

Issue - State: closed - Opened by mend-bolt-for-github[bot] about 4 years ago - 1 comment
Labels: security vulnerability

#99 - CVE-2016-10735 (Medium) detected in bootstrap-3.3.7.js

Issue - State: open - Opened by mend-bolt-for-github[bot] about 4 years ago
Labels: Mend: dependency security vulnerability

#98 - CVE-2018-20676 (Medium) detected in bootstrap-3.3.7.js

Issue - State: open - Opened by mend-bolt-for-github[bot] about 4 years ago
Labels: Mend: dependency security vulnerability

#97 - CVE-2020-11022 (Medium) detected in jquery-3.4.1.min.js, jquery-3.0.0.js

Issue - State: open - Opened by mend-bolt-for-github[bot] about 4 years ago
Labels: Mend: dependency security vulnerability

#96 - CVE-2020-11023 (Medium) detected in jquery-3.4.1.min.js, jquery-3.0.0.js

Issue - State: open - Opened by mend-bolt-for-github[bot] about 4 years ago
Labels: Mend: dependency security vulnerability

#95 - SBML2SBtab converter

Issue - State: closed - Opened by liebermeister about 4 years ago - 5 comments

#94 - sbml2sbtab.py cannot find SBtab library (and how to use it)

Issue - State: closed - Opened by smoretti about 4 years ago - 7 comments

#93 - Fehlender Zeilenumbruch

Issue - State: closed - Opened by liebermeister about 4 years ago - 2 comments

#92 - rewriting SBtabTable.from_data_frame() without using string parsing

Pull Request - State: closed - Opened by tlubitz over 4 years ago

#91 - fix Document.name bug

Pull Request - State: closed - Opened by tlubitz over 4 years ago

#90 - Feature/new constructor

Pull Request - State: closed - Opened by tlubitz over 4 years ago - 5 comments

#89 - "AttributeError: module 'misc' has no attribute 'getDelimiter'"

Issue - State: closed - Opened by liebermeister over 4 years ago - 7 comments

#88 - Support for TableType 'Config'

Issue - State: closed - Opened by eladnoor almost 5 years ago - 2 comments

#87 - SBtabTools in sbtab_dict.py

Issue - State: open - Opened by liebermeister almost 5 years ago - 1 comment

#86 - Verdeckte Anzeige in SBtab - HTML auf Webseite

Issue - State: open - Opened by liebermeister almost 5 years ago

#85 - "Warning"

Issue - State: open - Opened by liebermeister almost 5 years ago - 1 comment

#84 - Änderungen in Definitions-Tabelle und Beispieldateien

Pull Request - State: closed - Opened by liebermeister almost 5 years ago

#83 - Separate fields for Document and DocumentName

Issue - State: open - Opened by eladnoor almost 5 years ago

#82 - fixing issue #81: from_data_frame causes errors in header row

Pull Request - State: closed - Opened by eladnoor almost 5 years ago - 3 comments

#81 - SBtab header is printed incorrectly

Issue - State: closed - Opened by eladnoor almost 5 years ago - 3 comments

#80 - Copied modified files (from previous pull requests) to other directories

Pull Request - State: closed - Opened by liebermeister almost 5 years ago

#79 - CVE-2018-20677 (Medium) detected in bootstrap-3.3.7-3.3.13.min.js, bootstrap-3.3.7-3.3.13.js

Issue - State: closed - Opened by mend-bolt-for-github[bot] almost 5 years ago
Labels: security vulnerability

#78 - Paar Änderungen an Definitions- und Beispieldateien

Pull Request - State: closed - Opened by liebermeister almost 5 years ago - 1 comment

#77 - sorry ich hatte noch was verdüdelt .. hier teil 2 meines pull requests ..

Pull Request - State: closed - Opened by liebermeister almost 5 years ago

#76 - Changes in misc.py and sbtab2html.py to accomodate for RBA - HTML output

Pull Request - State: closed - Opened by liebermeister almost 5 years ago

#75 - cannot read sbtab, from csv or pd.dataframe

Issue - State: closed - Opened by Karrenbelt about 5 years ago - 4 comments

#74 - WS-2018-0021 (Medium) detected in bootstrap-2.2.2.min.js

Issue - State: closed - Opened by mend-bolt-for-github[bot] over 5 years ago
Labels: security vulnerability

#73 - CVE-2019-8331 (Medium) detected in bootstrap-2.2.2.min.js

Issue - State: closed - Opened by mend-bolt-for-github[bot] over 5 years ago
Labels: security vulnerability

#72 - CVE-2018-14042 (Medium) detected in bootstrap-2.2.2.min.js

Issue - State: closed - Opened by mend-bolt-for-github[bot] over 5 years ago
Labels: security vulnerability

#71 - CVE-2018-14041 (Medium) detected in bootstrap-2.2.2.min.js

Issue - State: closed - Opened by mend-bolt-for-github[bot] over 5 years ago
Labels: security vulnerability

#70 - CVE-2018-14040 (Medium) detected in bootstrap-2.2.2.min.js

Issue - State: closed - Opened by mend-bolt-for-github[bot] over 5 years ago
Labels: security vulnerability

#69 - CVE-2019-11358 (Medium) detected in jquery-3.3.1.min.js

Issue - State: closed - Opened by mend-bolt-for-github[bot] over 5 years ago
Labels: security vulnerability

#68 - CVE-2015-9251 (Medium) detected in jquery-1.10.0.min.js

Issue - State: closed - Opened by mend-bolt-for-github[bot] over 5 years ago
Labels: security vulnerability

#67 - CVE-2019-6446 (High) detected in numpy-1.14.5-cp27-cp27mu-manylinux1_x86_64.whl

Issue - State: closed - Opened by mend-bolt-for-github[bot] over 5 years ago
Labels: security vulnerability

#66 - Support physical units natively

Issue - State: open - Opened by eladnoor over 5 years ago
Labels: enhancement

#65 - Add example files for FBC and Layout to Download Area

Issue - State: closed - Opened by tlubitz almost 6 years ago
Labels: enhancement

#64 - fixing from_data_frame to match the new format (obligatory TableID)

Pull Request - State: closed - Opened by eladnoor almost 6 years ago

#63 - File not found Error raised in SBtab.read_csv() for no reason

Issue - State: closed - Opened by eladnoor almost 6 years ago - 2 comments
Labels: bug

#62 - change_attribute() is not working for SBtabDocuments

Issue - State: closed - Opened by eladnoor almost 6 years ago - 2 comments
Labels: bug

#61 - Outsource definition file readin to misc

Issue - State: closed - Opened by tlubitz about 6 years ago
Labels: enhancement

#60 - Employ Travis CI for SBtab

Issue - State: closed - Opened by tlubitz about 6 years ago
Labels: enhancement

#59 - FileNotFoundError in version 0.9.44

Issue - State: closed - Opened by eladnoor about 6 years ago - 5 comments

#58 - change_attribute function adds a line break at the end of the header_row

Issue - State: closed - Opened by eladnoor about 6 years ago
Labels: bug

#57 - adding default values to most arguments in from_data_frame()

Pull Request - State: closed - Opened by eladnoor about 6 years ago

#56 - Writing a new SBtabDocument

Issue - State: closed - Opened by eladnoor about 6 years ago - 3 comments
Labels: bug

#55 - Parameters in from_data_frame() function

Issue - State: closed - Opened by tlubitz about 6 years ago - 8 comments
Labels: question

#54 - More options for I/O of SBtabDocument

Issue - State: closed - Opened by eladnoor about 6 years ago - 8 comments
Labels: enhancement

#53 - Date attribute in header_row is causing export issues

Issue - State: closed - Opened by eladnoor about 6 years ago - 2 comments
Labels: bug

#52 - Issues installing

Issue - State: closed - Opened by thh32 about 6 years ago - 4 comments

#51 - Write unit tests for misc module

Issue - State: closed - Opened by tlubitz about 6 years ago - 1 comment
Labels: enhancement

#50 - Export all obligatory attributes from SBML to SBtab

Issue - State: closed - Opened by tlubitz over 6 years ago - 1 comment
Labels: enhancement