Ecosyste.ms: Issues
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GitHub / tlambert03/nd2 issues and pull requests
#244 - [test-bot] pip install --pre is failing
Issue -
State: open - Opened by github-actions[bot] 20 days ago
Labels: bug
#243 - ci(pre-commit.ci): autoupdate
Pull Request -
State: open - Opened by pre-commit-ci[bot] 22 days ago
- 2 comments
#242 - feat: dask chunking on frame level implemented
Pull Request -
State: open - Opened by gatoniel 2 months ago
- 7 comments
Labels: enhancement
#241 - build: test py3.13
Pull Request -
State: open - Opened by tlambert03 3 months ago
- 2 comments
#240 - fix: fix for dask 2024.8
Pull Request -
State: closed - Opened by tlambert03 3 months ago
- 2 comments
#239 - Warning about garbage collection, even with "with", with dask 2024.8
Issue -
State: closed - Opened by cmalinmayor 3 months ago
- 3 comments
#238 - Export position names to OME metadata
Issue -
State: open - Opened by anntzer 3 months ago
#237 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] 3 months ago
Labels: bug
#236 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 4 months ago
- 2 comments
#235 - ci(dependabot): bump CodSpeedHQ/action from 2 to 3
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
- 1 comment
Labels: dependencies
#234 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 5 months ago
- 2 comments
#233 - fix: tqdm -> tqdm.auto, for notebook users
Pull Request -
State: closed - Opened by georgeoshardo 5 months ago
- 2 comments
#232 - How to convert ROI coordinates from relative to pixels
Issue -
State: open - Opened by Kees-van-der-Oord-Nikon 5 months ago
- 3 comments
#231 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] 6 months ago
Labels: bug
#230 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] 6 months ago
Labels: bug
#229 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 7 months ago
- 2 comments
#228 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] 7 months ago
Labels: bug
#227 - test: drop aicsimageio test
Pull Request -
State: closed - Opened by tlambert03 7 months ago
- 2 comments
Labels: tests
#226 - fix: Fix datetime extraction
Pull Request -
State: closed - Opened by tlambert03 7 months ago
- 2 comments
#225 - Issue with saving nd2 to ome-tiff
Issue -
State: closed - Opened by BornKrefeld 7 months ago
- 1 comment
#224 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] 7 months ago
- 1 comment
Labels: bug
#223 - Error with saving nd2 file as ome-tiff file
Issue -
State: closed - Opened by BornKrefeld 7 months ago
- 2 comments
#222 - Save a single channel in nd2 to numpy
Issue -
State: closed - Opened by BornKrefeld 7 months ago
- 1 comment
#221 - Update _ome.py
Pull Request -
State: closed - Opened by rysk-t 8 months ago
- 5 comments
#220 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 8 months ago
- 2 comments
#219 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] 8 months ago
Labels: bug
#218 - feat: better color object
Pull Request -
State: closed - Opened by tlambert03 8 months ago
- 2 comments
Labels: enhancement
#217 - feat: add to_ome_tif method
Pull Request -
State: closed - Opened by fdrgsp 8 months ago
- 5 comments
Labels: enhancement
#216 - feat: add `write_tiff` export to OME-TIFF, include full metadata as StructuredAnnotation
Pull Request -
State: closed - Opened by tlambert03 9 months ago
- 8 comments
Labels: enhancement
#215 - feat: export to OME-TIFF, include full metadata as StructuredAnnotation
Issue -
State: closed - Opened by tlambert03 9 months ago
#214 - ci(dependabot): bump softprops/action-gh-release from 1 to 2
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 1 comment
Labels: dependencies
#213 - chore: use ruff format, add typos
Pull Request -
State: closed - Opened by tlambert03 9 months ago
- 2 comments
#212 - todo: improve handling of files with subloops
Issue -
State: open - Opened by tlambert03 9 months ago
#211 - bioio-nd2 failing to load from large file
Issue -
State: closed - Opened by toloudis 9 months ago
- 1 comment
#210 - ci: try reusable workflow
Pull Request -
State: closed - Opened by tlambert03 9 months ago
- 1 comment
#209 - chore: remove old deprecations
Pull Request -
State: closed - Opened by tlambert03 9 months ago
- 2 comments
#208 - build: drop python 3.7
Pull Request -
State: closed - Opened by tlambert03 9 months ago
- 2 comments
Labels: dependencies
#207 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] 9 months ago
Labels: bug
#206 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 10 months ago
- 2 comments
Labels: hide
#205 - ci(dependabot): bump codecov/codecov-action from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 2 comments
Labels: dependencies
#203 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] 10 months ago
Labels: bug
#201 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 11 months ago
- 2 comments
Labels: hide
#200 - tests: lxml on >=39
Pull Request -
State: closed - Opened by tlambert03 11 months ago
- 2 comments
Labels: tests
#197 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 12 months ago
- 2 comments
Labels: hide
#193 - fix: hacky fix for files with subloops
Pull Request -
State: closed - Opened by tlambert03 about 1 year ago
- 4 comments
Labels: bug
#190 - Missing axis
Issue -
State: closed - Opened by aaristov about 1 year ago
- 10 comments
#184 - todo: turn color integers into tuples (or something meaningful)
Issue -
State: closed - Opened by tlambert03 about 1 year ago
#165 - ci(pre-commit.ci): autoupdate
Pull Request -
State: open - Opened by pre-commit-ci[bot] over 1 year ago
- 2 comments
#164 - fix: fix binary reshaping
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 2 comments
Labels: bug
#163 - test: bump coverage
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: tests
#162 - docs: update readme
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 2 comments
Labels: documentation
#161 - feat: accept file handles as well as paths
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 2 comments
Labels: enhancement
#160 - refactor: use common base class for legacy and modern reader, move logic from nd2file
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 2 comments
Labels: refactor
#159 - feat: decode compressed lite variant, and read string type tags
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 2 comments
Labels: enhancement
#158 - fix: fix extra kwargs to roi info
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: bug
#157 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#156 - ci: test on py3.12
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 3 comments
#155 - fix: fix frame_metadata and various metadata typing
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 2 comments
Labels: bug
#154 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
- 2 comments
Labels: hide
#153 - feat: add ome_metadata output to ome-types
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 2 comments
Labels: enhancement
#152 - ci: add codspeed benchmarks
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 2 comments
Labels: tests
#151 - feat: add row filtering to nd2.index, as well as binary/roi data
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: enhancement
#150 - fix: improve roi parsing for some files
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: bug
#149 - docs: adding docs
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: documentation
#148 - feat: support files with custom experiment loops
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: enhancement
#147 - feat: add `python -m nd2.index` cli
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: enhancement
#146 - ci: try dropbox
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
#145 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#144 - feat: big update to events parsing. add .events method, deprecate recorded_date
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: enhancement
#143 - refactor: possibly move binary parse
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 2 comments
#142 - build: remove wurlitzer from build
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
#141 - refactor: cleaning up reader
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: refactor
#140 - [Task] Add benchmarks
Issue -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
#139 - feat: add more typed dicts to parsing
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: tests
#138 - ci: enable Strict mypy typing
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 1 comment
Labels: tests
#137 - test: update rescue test
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
Labels: tests
#136 - chore: adding nd2_describe script
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
#135 - feat: Remove sdk, use all python
Pull Request -
State: closed - Opened by tlambert03 over 1 year ago
- 3 comments
Labels: enhancement
#134 - ci(dependabot): bump pypa/cibuildwheel from 2.12.3 to 2.13.1
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 2 comments
Labels: dependencies
#133 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
Labels: hide
#132 - ci(dependabot): bump pypa/cibuildwheel from 2.12.3 to 2.13.0
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#131 - fix: Make 'periodDiff' optional in TimeLoopParams construction
Pull Request -
State: closed - Opened by SeanLeRoy over 1 year ago
- 6 comments
Labels: bug
#130 - ci(dependabot): bump pypa/cibuildwheel from 2.12.1 to 2.12.3
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#129 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#128 - ci(dependabot): bump pypa/cibuildwheel from 2.12.0 to 2.12.1
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#127 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
Labels: hide
#126 - Package not found on conda-forge channels
Issue -
State: closed - Opened by metalmicrobe over 1 year ago
- 4 comments
#125 - ci(dependabot): bump pypa/cibuildwheel from 2.11.3 to 2.12.0
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#124 - ci(pre-commit.ci): autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] almost 2 years ago
Labels: hide
#123 - ci(dependabot): bump pypa/cibuildwheel from 2.11.3 to 2.11.4
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies
#122 - feat: [wip] native implementation of SDK
Pull Request -
State: closed - Opened by tlambert03 almost 2 years ago
#121 - Difference between NETimeLoop and TimeLoop?
Issue -
State: open - Opened by gatoniel almost 2 years ago
- 6 comments
#120 - ci(dependabot): bump pypa/cibuildwheel from 2.11.2 to 2.11.3
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#119 - liblimfile.so: cannot open shared object file on CentOS
Issue -
State: closed - Opened by joshua-gould almost 2 years ago
- 3 comments
#118 - bug: Lim_FileGetAttributes failing in certain linux environments
Issue -
State: closed - Opened by tlambert03 almost 2 years ago
- 4 comments
#117 - fix: catch exception on file open and release handle
Pull Request -
State: closed - Opened by tlambert03 almost 2 years ago
- 6 comments
#116 - fix: close handles on object deletion
Pull Request -
State: closed - Opened by tlambert03 almost 2 years ago
Labels: bug
#115 - style: use ruff linter and update pre-commit
Pull Request -
State: closed - Opened by tlambert03 almost 2 years ago
#114 - File handle left open when an nd2 file fails to read
Issue -
State: closed - Opened by manthey almost 2 years ago
- 18 comments
#113 - ci: [pre-commit.ci] autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] almost 2 years ago