Ecosyste.ms: Issues

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GitHub / titipata/pubmed_parser issues and pull requests

#62 - Update readme to include ref year

Pull Request - State: closed - Opened by kjhenner almost 6 years ago

#61 - retrieve year from pubmed oa refs

Pull Request - State: closed - Opened by kjhenner almost 6 years ago - 3 comments

#60 - Update pubmed_oa_parser.py

Pull Request - State: closed - Opened by soupstandstop about 6 years ago - 2 comments

#59 - Parse Pubmed OA Paragraph

Issue - State: closed - Opened by soupstandstop about 6 years ago - 9 comments

#58 - Pubdate not returning correct year

Issue - State: closed - Opened by MatthewDeitz about 6 years ago - 4 comments

#57 - parse publication date

Pull Request - State: closed - Opened by yak1r about 6 years ago - 5 comments

#56 - Fix online parser to parse given PMID

Issue - State: closed - Opened by titipata over 6 years ago - 1 comment

#55 - XMLSyntaxError

Issue - State: closed - Opened by deakkon over 6 years ago - 4 comments

#54 - shorten installation steps by using pip

Pull Request - State: closed - Opened by bluenex over 6 years ago

#52 - README: explicitly change into the source directory

Pull Request - State: closed - Opened by vbatts over 7 years ago

#51 - Abstract partically extracted

Issue - State: closed - Opened by deakkon over 7 years ago - 7 comments

#50 - feature request: MeSH IDs

Issue - State: closed - Opened by pseudomonas over 7 years ago - 4 comments

#48 - python-2.7 import error: No module named 'request'

Issue - State: closed - Opened by uludag over 7 years ago - 4 comments

#47 - Possible error while parsing structured abstracts.

Issue - State: closed - Opened by RudrakshTuwani over 7 years ago - 23 comments

#46 - problem with parse paragraph function

Issue - State: closed - Opened by rbf22 over 7 years ago - 8 comments
Labels: help wanted

#44 - Error while reading Medline gz file from path

Issue - State: closed - Opened by deakkon over 7 years ago - 3 comments

#43 - "can only parse strings" while reading PMC nxml

Issue - State: closed - Opened by deakkon over 7 years ago - 6 comments

#42 - Return table in format that can convert to multilayer dataframe

Issue - State: open - Opened by titipata over 7 years ago
Labels: help wanted

#41 - Problem during parsing medline17m1086 file

Issue - State: closed - Opened by schnobi1990 over 7 years ago - 4 comments

#40 - Parsers cannot read the xml file.

Issue - State: closed - Opened by grabear over 7 years ago - 3 comments

#39 - Problem with parsing MEDLINE baseline 2017 xml files

Issue - State: closed - Opened by chengkun-wu over 7 years ago - 7 comments

#38 - Parse more information from MEDLINE XML file

Issue - State: closed - Opened by titipata almost 8 years ago - 1 comment

#37 - PMID to PMC API from Medline cannot convert all provided PMID

Issue - State: open - Opened by titipata almost 8 years ago - 6 comments
Labels: enhancement

#36 - paragraphs with no references not included by parse_pubmed_paragraph

Issue - State: closed - Opened by uludag almost 8 years ago - 4 comments

#35 - Adding Web of Science (WoS) parser

Issue - State: closed - Opened by titipata about 8 years ago - 1 comment
Labels: enhancement

#34 - Use urllib library instead of requests

Issue - State: closed - Opened by titipata about 8 years ago - 1 comment

#33 - Problem in list path function: list_xml_path()

Issue - State: closed - Opened by RengarAndKhz about 8 years ago - 2 comments

#32 - Add function to parse table from Pubmed OA XML

Issue - State: closed - Opened by titipata about 8 years ago - 1 comment

#31 - Unresolved references to 'join' in pubmed_oa_parser

Issue - State: closed - Opened by TariqAHassan about 8 years ago - 3 comments

#30 - Add Ability to Harvest all PubDate Information

Pull Request - State: closed - Opened by TariqAHassan about 8 years ago - 1 comment

#29 - Update script to download whole Pubmed OA and MEDLINE dataset

Issue - State: closed - Opened by titipata about 8 years ago - 3 comments

#28 - Pubmed OA parser gives some error when parsing `subject`

Issue - State: closed - Opened by titipata about 8 years ago - 1 comment

#22 - Remove extract space that appear when parsing abstract text

Issue - State: closed - Opened by titipata over 8 years ago - 2 comments

#20 - Clean code and update function's comments

Issue - State: closed - Opened by titipata over 8 years ago - 1 comment
Labels: enhancement